Wall clock time and date at job start Mon Mar 30 2020 02:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47367 * 2 1 4 4 H 1.08999 * 109.46960 * 54.99706 * 3 2 1 5 5 C 1.53004 * 109.47131 * 175.00069 * 3 2 1 6 6 C 1.53002 * 109.46935 * 184.99938 * 5 3 2 7 7 O 1.42894 * 109.47270 * 180.02562 * 6 5 3 8 8 N 1.46502 * 109.46736 * 295.00166 * 3 2 1 9 9 C 1.34768 * 120.00310 * 84.99999 * 8 3 2 10 10 O 1.21588 * 119.99828 * 359.97438 * 9 8 3 11 11 C 1.47645 * 120.00274 * 179.97438 * 9 8 3 12 12 C 1.40014 * 119.89357 * 359.72890 * 11 9 8 13 13 C 1.36315 * 120.10700 * 179.75740 * 12 11 9 14 14 C 1.40890 * 119.88875 * 0.51272 * 13 12 11 15 15 C 1.41108 * 120.10228 * 179.72116 * 14 13 12 16 16 H 1.07998 * 119.99746 * 204.65522 * 15 14 13 17 17 C 1.40228 * 120.00117 * 24.64605 * 15 14 13 18 18 N 1.30643 * 119.99929 * 17.87268 * 17 15 14 19 19 Si 1.86799 * 119.99953 * 197.86677 * 17 15 14 20 20 H 1.48500 * 109.47122 * 90.00454 * 19 17 15 21 21 H 1.48501 * 109.47135 * 210.00268 * 19 17 15 22 22 H 1.48502 * 109.47377 * 330.00505 * 19 17 15 23 23 C 1.40885 * 119.79519 * 359.73905 * 14 13 12 24 24 C 1.36316 * 119.89382 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.47359 * 300.00104 * 1 2 3 26 26 H 1.08995 * 109.47307 * 59.99917 * 1 2 3 27 27 H 1.08997 * 109.47570 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47359 * 239.99896 * 2 1 3 29 29 H 1.09005 * 109.47189 * 120.00166 * 2 1 3 30 30 H 1.08994 * 109.46866 * 304.99958 * 5 3 2 31 31 H 1.08998 * 109.46828 * 65.00272 * 5 3 2 32 32 H 1.09006 * 109.47025 * 299.99979 * 6 5 3 33 33 H 1.08995 * 109.47031 * 59.99727 * 6 5 3 34 34 H 0.96694 * 114.00229 * 180.02562 * 7 6 5 35 35 H 0.97009 * 119.99549 * 264.99840 * 8 3 2 36 36 H 1.07998 * 119.94565 * 0.02562 * 12 11 9 37 37 H 1.07998 * 120.05848 * 180.23073 * 13 12 11 38 38 H 0.97000 * 120.00302 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.05678 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.95011 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 6 4.0645 2.8849 0.2511 7 8 5.4887 2.8867 0.3679 8 7 1.6523 2.0974 -1.2518 9 6 0.4351 2.6643 -1.3670 10 8 -0.3415 2.6318 -0.4321 11 6 0.0447 3.3249 -2.6284 12 6 0.9429 3.3660 -3.7017 13 6 0.5852 3.9704 -4.8700 14 6 -0.6868 4.5637 -4.9927 15 6 -1.0596 5.1957 -6.1980 16 1 -1.8145 5.9680 -6.1917 17 6 -0.4498 4.8211 -7.4039 18 7 0.1872 3.6836 -7.4880 19 14 -0.5484 5.9484 -8.8901 20 1 0.6081 6.8799 -8.8825 21 1 -0.5202 5.1343 -10.1317 22 1 -1.8117 6.7274 -8.8376 23 6 -1.5852 4.5244 -3.9082 24 6 -1.2207 3.9126 -2.7458 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8570 0.8800 1.0113 31 1 4.0029 0.9835 -0.7597 32 1 3.7723 3.4493 -0.6346 33 1 3.6264 3.3457 1.1364 34 1 5.8754 3.7690 0.4517 35 1 2.2719 2.1230 -1.9979 36 1 1.9192 2.9143 -3.6052 37 1 1.2773 3.9984 -5.6986 38 1 0.6087 3.4242 -8.3223 39 1 -2.5611 4.9782 -3.9975 40 1 -1.9085 3.8823 -1.9137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340270980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:00 Heat of formation + Delta-G solvation = -91.753415 kcal Electronic energy + Delta-G solvation = -21253.379048 eV Core-core repulsion = 18031.781980 eV Total energy + Delta-G solvation = -3221.597068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.54389 -37.60836 -36.94179 -35.50139 -33.88739 -32.09558 -30.95592 -29.86505 -29.44547 -26.21083 -25.28984 -22.25903 -21.82507 -21.07249 -20.44497 -19.67697 -17.59739 -17.51189 -16.56378 -16.19244 -15.42911 -15.05172 -14.87500 -14.13575 -14.00968 -13.80385 -13.46338 -13.11806 -12.93019 -12.67667 -12.45889 -12.11913 -11.98964 -11.75177 -11.39553 -11.33259 -11.29738 -11.04881 -10.94921 -10.85631 -10.69762 -10.53843 -10.06361 -10.03943 -9.57377 -9.36987 -8.92840 -8.52293 -7.73877 -7.55872 -7.05132 -4.62005 2.22293 2.90627 2.94555 2.96933 3.01925 3.72624 3.79051 3.86500 4.01728 4.54951 4.93271 4.96751 5.09760 5.34165 5.36312 5.47541 5.56181 5.64308 5.77821 5.85372 5.93934 6.03489 6.08380 6.17792 6.19672 6.30245 6.43050 6.73483 6.75985 6.81355 6.96286 7.07163 7.12112 7.41958 7.48618 7.64198 7.77988 7.84511 8.05698 8.24921 8.38428 8.61625 8.73746 9.09479 9.86922 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.004061 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.377792 B = 6893.597238 C = 7578.612320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.150 3.850 4 H 0.086 0.914 5 C -0.126 4.126 6 C 0.074 3.926 7 O -0.578 6.578 8 N -0.738 5.738 9 C 0.573 3.427 10 O -0.569 6.569 11 C -0.285 4.285 12 C -0.063 4.063 13 C -0.178 4.178 14 C 0.128 3.872 15 C -0.444 4.444 16 H 0.085 0.915 17 C 0.075 3.925 18 N -0.772 5.772 19 Si 0.914 3.086 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.239 4.239 24 C -0.022 4.022 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.379 0.621 35 H 0.396 0.604 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.287 0.713 39 H 0.097 0.903 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.086 -2.412 7.160 10.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.044 3.956 4 H 0.104 0.896 5 C -0.164 4.164 6 C -0.004 4.004 7 O -0.384 6.384 8 N -0.391 5.391 9 C 0.368 3.632 10 O -0.451 6.451 11 C -0.290 4.290 12 C -0.082 4.082 13 C -0.198 4.198 14 C 0.125 3.875 15 C -0.471 4.471 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.395 5.395 19 Si 0.737 3.263 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.259 4.259 24 C -0.041 4.041 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.226 0.774 35 H 0.231 0.769 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.566 -3.254 7.612 10.566 hybrid contribution 0.393 0.945 -1.136 1.529 sum 6.960 -2.309 6.475 9.782 Atomic orbital electron populations 1.21792 0.94616 1.00068 1.03679 1.21922 0.97417 0.95958 1.01613 1.20819 0.92399 0.93611 0.88750 0.89627 1.21799 0.94596 0.96291 1.03673 1.22206 0.80405 0.97486 1.00256 1.86429 1.20889 1.34080 1.96986 1.46034 1.17778 1.59542 1.15735 1.18508 0.80190 0.76502 0.88031 1.90640 1.51608 1.61559 1.41314 1.18929 0.98749 1.16798 0.94490 1.20473 0.96378 0.97906 0.93482 1.20976 0.97312 1.04722 0.96760 1.17785 0.90290 0.87513 0.91894 1.19862 1.18575 1.17512 0.91174 0.89714 1.26094 0.92785 0.94607 1.01167 1.69741 1.23691 1.17735 1.28329 0.86210 0.80280 0.80571 0.79227 1.18930 1.20005 1.18271 1.20716 0.99533 1.10095 0.95534 1.20359 0.93938 0.93696 0.96140 0.92394 0.91631 0.94124 0.92028 0.91789 0.90103 0.90754 0.92986 0.93626 0.77437 0.76888 0.89423 0.86253 0.90224 0.88449 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.51 37.15 0.32 -1.90 16 2 C -0.13 -1.69 5.61 -26.73 -0.15 -1.84 16 3 C 0.15 2.02 2.26 -67.93 -0.15 1.87 16 4 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 5 C -0.13 -1.42 5.12 -26.73 -0.14 -1.56 16 6 C 0.07 0.84 6.93 37.16 0.26 1.10 16 7 O -0.58 -6.41 13.66 -35.23 -0.48 -6.89 16 8 N -0.74 -11.72 4.43 -54.81 -0.24 -11.96 16 9 C 0.57 11.52 6.33 -12.42 -0.08 11.44 16 10 O -0.57 -12.57 13.45 5.29 0.07 -12.50 16 11 C -0.29 -6.34 5.89 -104.73 -0.62 -6.95 16 12 C -0.06 -1.37 9.47 -39.61 -0.38 -1.75 16 13 C -0.18 -4.32 8.64 -39.27 -0.34 -4.66 16 14 C 0.13 3.24 5.58 -106.80 -0.60 2.64 16 15 C -0.44 -10.96 9.04 -37.75 -0.34 -11.30 16 16 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 17 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 18 N -0.77 -18.38 10.95 55.56 0.61 -17.77 16 19 Si 0.91 17.15 29.60 -169.99 -5.03 12.12 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 23 C -0.24 -5.73 9.73 -39.27 -0.38 -6.12 16 24 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 25 H 0.06 0.93 7.84 -51.92 -0.41 0.52 16 26 H 0.06 1.21 5.64 -51.93 -0.29 0.92 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.62 7.75 -51.93 -0.40 0.22 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.38 2.56 9.12 45.56 0.42 2.98 16 35 H 0.40 5.81 6.60 -40.82 -0.27 5.54 16 36 H 0.09 1.62 6.37 -52.49 -0.33 1.29 16 37 H 0.12 2.94 6.16 -52.49 -0.32 2.61 16 38 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 40 H 0.10 2.25 7.63 -52.49 -0.40 1.85 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -28.19 329.00 -8.10 -36.28 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -4.92 Total: 14.03 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -3.06 Total: -18.27 kcal Atomic # 7 Polarization: -30.10 SS G_CDS: 0.37 Total: -29.73 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.41 Total: -19.39 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.19 -8.10 -36.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340270980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.470 kcal (2) G-P(sol) polarization free energy of solvation -28.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds