Wall clock time and date at job start Mon Mar 30 2020 02:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47367 * 2 1 4 4 H 1.08999 * 109.46960 * 54.99706 * 3 2 1 5 5 C 1.53004 * 109.47131 * 175.00069 * 3 2 1 6 6 C 1.53002 * 109.46935 * 184.99938 * 5 3 2 7 7 O 1.42894 * 109.47270 * 180.02562 * 6 5 3 8 8 N 1.46502 * 109.46736 * 295.00166 * 3 2 1 9 9 C 1.34768 * 120.00310 * 84.99999 * 8 3 2 10 10 O 1.21588 * 119.99828 * 359.97438 * 9 8 3 11 11 C 1.47645 * 120.00274 * 179.97438 * 9 8 3 12 12 C 1.40014 * 119.89357 * 359.72890 * 11 9 8 13 13 C 1.36315 * 120.10700 * 179.75740 * 12 11 9 14 14 C 1.40890 * 119.88875 * 0.51272 * 13 12 11 15 15 C 1.41108 * 120.10228 * 179.72116 * 14 13 12 16 16 H 1.07998 * 119.99746 * 204.65522 * 15 14 13 17 17 C 1.40228 * 120.00117 * 24.64605 * 15 14 13 18 18 N 1.30643 * 119.99929 * 17.87268 * 17 15 14 19 19 Si 1.86799 * 119.99953 * 197.86677 * 17 15 14 20 20 H 1.48500 * 109.47122 * 90.00454 * 19 17 15 21 21 H 1.48501 * 109.47135 * 210.00268 * 19 17 15 22 22 H 1.48502 * 109.47377 * 330.00505 * 19 17 15 23 23 C 1.40885 * 119.79519 * 359.73905 * 14 13 12 24 24 C 1.36316 * 119.89382 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.47359 * 300.00104 * 1 2 3 26 26 H 1.08995 * 109.47307 * 59.99917 * 1 2 3 27 27 H 1.08997 * 109.47570 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47359 * 239.99896 * 2 1 3 29 29 H 1.09005 * 109.47189 * 120.00166 * 2 1 3 30 30 H 1.08994 * 109.46866 * 304.99958 * 5 3 2 31 31 H 1.08998 * 109.46828 * 65.00272 * 5 3 2 32 32 H 1.09006 * 109.47025 * 299.99979 * 6 5 3 33 33 H 1.08995 * 109.47031 * 59.99727 * 6 5 3 34 34 H 0.96694 * 114.00229 * 180.02562 * 7 6 5 35 35 H 0.97009 * 119.99549 * 264.99840 * 8 3 2 36 36 H 1.07998 * 119.94565 * 0.02562 * 12 11 9 37 37 H 1.07998 * 120.05848 * 180.23073 * 13 12 11 38 38 H 0.97000 * 120.00302 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.05678 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.95011 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 6 4.0645 2.8849 0.2511 7 8 5.4887 2.8867 0.3679 8 7 1.6523 2.0974 -1.2518 9 6 0.4351 2.6643 -1.3670 10 8 -0.3415 2.6318 -0.4321 11 6 0.0447 3.3249 -2.6284 12 6 0.9429 3.3660 -3.7017 13 6 0.5852 3.9704 -4.8700 14 6 -0.6868 4.5637 -4.9927 15 6 -1.0596 5.1957 -6.1980 16 1 -1.8145 5.9680 -6.1917 17 6 -0.4498 4.8211 -7.4039 18 7 0.1872 3.6836 -7.4880 19 14 -0.5484 5.9484 -8.8901 20 1 0.6081 6.8799 -8.8825 21 1 -0.5202 5.1343 -10.1317 22 1 -1.8117 6.7274 -8.8376 23 6 -1.5852 4.5244 -3.9082 24 6 -1.2207 3.9126 -2.7458 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8570 0.8800 1.0113 31 1 4.0029 0.9835 -0.7597 32 1 3.7723 3.4493 -0.6346 33 1 3.6264 3.3457 1.1364 34 1 5.8754 3.7690 0.4517 35 1 2.2719 2.1230 -1.9979 36 1 1.9192 2.9143 -3.6052 37 1 1.2773 3.9984 -5.6986 38 1 0.6087 3.4242 -8.3223 39 1 -2.5611 4.9782 -3.9975 40 1 -1.9085 3.8823 -1.9137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340270980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:00 Heat of formation + Delta-G solvation = -109.801076 kcal Electronic energy + Delta-G solvation = -21254.161653 eV Core-core repulsion = 18031.781980 eV Total energy + Delta-G solvation = -3222.379674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.03752 -39.17228 -38.11939 -36.71775 -35.65687 -33.51371 -32.08423 -31.50125 -31.24924 -27.82947 -26.54213 -23.89771 -22.84768 -22.78065 -21.76023 -21.22961 -19.35727 -18.62879 -17.97320 -17.52362 -17.01918 -16.32669 -15.95880 -15.74384 -15.50670 -15.08110 -14.93960 -14.56864 -14.35331 -14.15550 -13.84155 -13.68057 -13.51229 -13.15967 -12.87966 -12.76157 -12.63149 -12.40502 -12.36306 -12.05729 -11.93086 -11.76096 -11.70331 -11.35419 -11.11824 -10.91460 -10.57562 -9.91087 -9.56434 -9.39236 -8.78994 -6.47944 0.47363 1.15445 1.38831 1.43623 1.52974 2.15307 2.19693 2.44436 2.81162 3.17002 3.70086 3.97326 4.00065 4.14430 4.28685 4.29711 4.31871 4.41964 4.45811 4.53238 4.65466 4.77465 4.92774 4.98495 5.00010 5.03640 5.06401 5.11771 5.17441 5.25938 5.31682 5.49601 5.58942 5.72010 5.84428 5.96100 6.00230 6.23881 6.54815 6.76425 6.78384 6.84575 6.90120 7.53543 8.16319 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.004061 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.377792 B = 6893.597238 C = 7578.612320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.150 3.850 4 H 0.072 0.928 5 C -0.117 4.117 6 C 0.074 3.926 7 O -0.590 6.590 8 N -0.721 5.721 9 C 0.575 3.425 10 O -0.591 6.591 11 C -0.291 4.291 12 C -0.054 4.054 13 C -0.199 4.199 14 C 0.101 3.899 15 C -0.477 4.477 16 H 0.084 0.916 17 C 0.039 3.961 18 N -0.800 5.800 19 Si 0.987 3.013 20 H -0.258 1.258 21 H -0.265 1.265 22 H -0.258 1.258 23 C -0.254 4.254 24 C -0.033 4.033 25 H 0.044 0.956 26 H 0.029 0.971 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.397 0.603 35 H 0.404 0.596 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.297 0.703 39 H 0.102 0.898 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.833 -3.062 7.234 11.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C 0.045 3.955 4 H 0.090 0.910 5 C -0.155 4.155 6 C -0.003 4.003 7 O -0.398 6.398 8 N -0.374 5.374 9 C 0.369 3.631 10 O -0.475 6.475 11 C -0.296 4.296 12 C -0.073 4.073 13 C -0.218 4.218 14 C 0.098 3.902 15 C -0.504 4.504 16 H 0.102 0.898 17 C -0.180 4.180 18 N -0.423 5.423 19 Si 0.807 3.193 20 H -0.183 1.183 21 H -0.189 1.189 22 H -0.182 1.182 23 C -0.274 4.274 24 C -0.052 4.052 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.246 0.754 35 H 0.240 0.760 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.352 -3.914 7.704 12.018 hybrid contribution -0.121 1.080 -1.037 1.502 sum 8.231 -2.834 6.668 10.965 Atomic orbital electron populations 1.21731 0.96596 1.00346 1.01238 1.21920 0.95461 0.95652 1.03451 1.20971 0.94110 0.93608 0.86776 0.90980 1.21717 0.92368 0.96622 1.04752 1.22150 0.80808 0.97405 0.99967 1.86379 1.20526 1.35932 1.96948 1.45902 1.16241 1.58226 1.16991 1.18208 0.81308 0.76706 0.86908 1.90631 1.52654 1.62487 1.41740 1.19261 0.98417 1.16203 0.95699 1.20721 0.97600 0.96705 0.92305 1.21008 0.97088 1.06140 0.97544 1.18125 0.91087 0.88369 0.92616 1.20111 1.19865 1.18313 0.92140 0.89818 1.26900 0.91866 0.95714 1.03491 1.69761 1.23961 1.18897 1.29700 0.85121 0.80256 0.78425 0.75529 1.18291 1.18931 1.18176 1.20849 0.99855 1.10802 0.95855 1.20508 0.94778 0.93961 0.95996 0.93665 0.95156 0.92515 0.91224 0.88834 0.88394 0.90151 0.93919 0.93413 0.75374 0.75962 0.86057 0.86982 0.89222 0.88027 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 8.51 71.98 0.61 -3.58 16 2 C -0.13 -2.93 5.61 30.59 0.17 -2.76 16 3 C 0.15 3.72 2.26 44.99 0.10 3.82 16 4 H 0.07 2.04 7.58 -2.39 -0.02 2.03 16 5 C -0.12 -2.28 5.12 30.60 0.16 -2.12 16 6 C 0.07 1.52 6.93 71.98 0.50 2.02 16 7 O -0.59 -11.52 13.66 -148.98 -2.03 -13.55 16 8 N -0.72 -21.79 4.43 -445.58 -1.97 -23.77 16 9 C 0.58 22.91 6.33 86.73 0.55 23.46 16 10 O -0.59 -26.22 13.45 -3.99 -0.05 -26.28 16 11 C -0.29 -12.99 5.89 -19.93 -0.12 -13.11 16 12 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 13 C -0.20 -9.76 8.64 22.47 0.19 -9.57 16 14 C 0.10 5.25 5.58 -21.28 -0.12 5.14 16 15 C -0.48 -24.17 9.04 23.46 0.21 -23.96 16 16 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 17 C 0.04 1.82 5.14 85.35 0.44 2.26 16 18 N -0.80 -38.26 10.95 21.87 0.24 -38.02 16 19 Si 0.99 34.80 29.60 68.60 2.03 36.83 16 20 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 21 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 22 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 23 C -0.25 -12.61 9.73 22.47 0.22 -12.39 16 24 C -0.03 -1.58 9.52 22.25 0.21 -1.37 16 25 H 0.04 1.42 7.84 -2.38 -0.02 1.40 16 26 H 0.03 1.10 5.64 -2.39 -0.01 1.08 16 27 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.09 1.67 8.14 -2.38 -0.02 1.66 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 0.94 7.75 -2.38 -0.02 0.92 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.40 4.43 9.12 -74.06 -0.68 3.76 16 35 H 0.40 10.96 6.60 -92.70 -0.61 10.35 16 36 H 0.12 4.28 6.37 -2.91 -0.02 4.26 16 37 H 0.11 5.61 6.16 -2.91 -0.02 5.59 16 38 H 0.30 12.60 8.29 -92.71 -0.77 11.83 16 39 H 0.10 4.77 8.06 -2.91 -0.02 4.74 16 40 H 0.10 4.74 7.63 -2.91 -0.02 4.71 16 Total: -1.00 -61.53 329.00 1.32 -60.20 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: -0.23 Total: 38.88 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 3.34 Total: -34.30 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -1.73 Total: -61.79 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -2.09 Total: -39.83 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.83 kcal Total: -61.53 1.32 -60.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340270980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.598 kcal (2) G-P(sol) polarization free energy of solvation -61.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds