Wall clock time and date at job start Mon Mar 30 2020 01:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 C 1.53000 * 109.46708 * 239.99916 * 2 1 3 5 5 C 1.50698 * 109.47356 * 60.00582 * 4 2 1 6 6 H 1.07998 * 119.99756 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00089 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00095 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99896 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47136 * 89.99694 * 9 7 5 11 11 H 1.48504 * 109.46915 * 209.99773 * 9 7 5 12 12 H 1.48503 * 109.47098 * 329.99627 * 9 7 5 13 13 C 1.53003 * 109.46870 * 120.00486 * 2 1 3 14 14 N 1.46499 * 109.46708 * 299.99298 * 13 2 1 15 15 C 1.39975 * 119.99874 * 180.02562 * 14 13 2 16 16 C 1.38848 * 120.04575 * 359.97438 * 15 14 13 17 17 C 1.38184 * 120.05640 * 180.02562 * 16 15 14 18 18 C 1.38245 * 120.19679 * 0.02562 * 17 16 15 19 19 C 1.38691 * 120.16429 * 359.97438 * 18 17 16 20 20 C 1.39053 * 119.87171 * 359.72923 * 19 18 17 21 21 O 1.36617 * 108.66999 * 179.78821 * 20 19 18 22 22 C 1.43995 * 105.52524 * 343.13579 * 21 20 19 23 23 O 1.36523 * 131.46609 * 180.02562 * 19 18 17 24 24 H 1.09007 * 109.46830 * 300.00287 * 1 2 3 25 25 H 1.09005 * 109.46980 * 59.99998 * 1 2 3 26 26 H 1.08994 * 109.47292 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.46855 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47095 * 300.00040 * 3 2 1 29 29 H 1.08998 * 109.46768 * 59.99989 * 3 2 1 30 30 H 1.09005 * 109.47033 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.47677 * 299.99823 * 4 2 1 32 32 H 0.96996 * 120.00083 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.46692 * 179.97438 * 13 2 1 34 34 H 1.08994 * 109.47584 * 59.99664 * 13 2 1 35 35 H 0.97005 * 120.00261 * 0.02562 * 14 13 2 36 36 H 1.07993 * 119.97042 * 359.97438 * 16 15 14 37 37 H 1.08004 * 119.90527 * 180.02562 * 17 16 15 38 38 H 1.08006 * 119.91810 * 179.97438 * 18 17 16 39 39 H 1.08998 * 110.57823 * 268.28618 * 22 21 20 40 40 H 1.09000 * 110.69958 * 145.45704 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9166 0.8671 -2.3806 7 6 1.8703 -0.4823 -3.7320 8 7 2.6262 -1.5516 -3.8527 9 14 1.2471 0.3980 -5.2572 10 1 2.2252 1.4396 -5.6619 11 1 1.0817 -0.5815 -6.3611 12 1 -0.0609 1.0356 -4.9610 13 6 2.0400 -0.7214 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8902 -0.5087 3.7167 16 6 2.6883 -1.6376 3.8452 17 6 3.0222 -2.1099 5.1001 18 6 2.5634 -1.4618 6.2318 19 6 1.7657 -0.3334 6.1135 20 6 1.4318 0.1497 4.8530 21 8 0.6430 1.2549 5.0031 22 6 0.1701 1.2092 6.3624 23 8 1.1954 0.4733 7.0557 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2491 31 1 1.6766 -1.7490 -1.2493 32 1 2.8605 -1.8830 -4.7336 33 1 3.1300 -0.7218 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9938 0.7579 2.3564 36 1 3.0477 -2.1474 2.9636 37 1 3.6435 -2.9880 5.1973 38 1 2.8267 -1.8351 7.2104 39 1 -0.7834 0.6841 6.4189 40 1 0.0772 2.2150 6.7721 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341501698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:00 Heat of formation + Delta-G solvation = -48.337161 kcal Electronic energy + Delta-G solvation = -21441.614868 eV Core-core repulsion = 18221.900470 eV Total energy + Delta-G solvation = -3219.714398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.03558 -38.66078 -37.11881 -36.20691 -34.03434 -32.25267 -29.91803 -28.93260 -26.97717 -26.50255 -26.00621 -25.64662 -23.16869 -22.69015 -21.53177 -18.59769 -17.89858 -17.63298 -17.28483 -16.40016 -16.28097 -15.38405 -14.95599 -14.49512 -14.43256 -14.18461 -14.03201 -13.25874 -13.14253 -13.09818 -12.90534 -12.80073 -12.31772 -12.08518 -11.94636 -11.37804 -11.31156 -11.03655 -10.89979 -10.85751 -10.64768 -10.39860 -10.26006 -10.02380 -9.69457 -9.22713 -8.95720 -8.38477 -8.10532 -7.20262 -6.02989 -4.03872 1.23898 1.53290 2.80710 3.29463 3.36493 3.38548 3.46543 3.61078 3.76302 4.43482 4.63042 4.77806 4.82115 5.06907 5.19827 5.32918 5.34321 5.43202 5.47744 5.57364 5.74022 5.82192 6.08491 6.13298 6.17163 6.24149 6.27532 6.37767 6.48605 6.51006 6.63267 6.63804 7.00946 7.05897 7.06396 7.13069 7.49420 7.59400 7.72099 7.90708 7.95789 8.38470 9.00685 9.59514 11.08539 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035701 B = 0.003586 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.092906 B = 7806.195243 C = 8382.321790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.130 3.870 14 N -0.732 5.732 15 C 0.255 3.745 16 C -0.195 4.195 17 C -0.057 4.057 18 C -0.172 4.172 19 C 0.077 3.923 20 C -0.066 4.066 21 O -0.311 6.311 22 C 0.217 3.783 23 O -0.314 6.314 24 H 0.029 0.971 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.403 0.597 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 1.560 18.873 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.007 3.993 14 N -0.360 5.360 15 C 0.148 3.852 16 C -0.218 4.218 17 C -0.076 4.076 18 C -0.193 4.193 19 C 0.032 3.968 20 C -0.114 4.114 21 O -0.228 6.228 22 C 0.104 3.896 23 O -0.231 6.231 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.239 0.761 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.095 0.905 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.253 1.555 18.626 18.826 hybrid contribution -0.691 0.861 -0.864 1.402 sum -2.945 2.416 17.762 18.166 Atomic orbital electron populations 1.21751 0.95282 1.01082 1.00281 1.20867 0.95507 0.95895 0.94839 1.21748 1.00447 0.95933 1.00291 1.19091 0.96268 0.95164 0.89545 1.21187 1.31163 1.12062 0.90534 0.92285 1.24999 0.95306 0.95051 0.99071 1.69954 1.37048 1.23021 1.23458 0.86651 0.79232 0.79433 0.83030 1.20750 1.21307 1.19940 1.21668 0.98294 0.95833 0.83529 1.45104 1.56189 1.32806 1.01900 1.16966 0.93750 0.91505 0.83005 1.20568 1.04278 0.98168 0.98788 1.20659 0.97531 0.98716 0.90715 1.19763 1.04557 0.95119 0.99816 1.19535 0.98645 0.93179 0.85432 1.19047 1.05930 0.92665 0.93800 1.87310 1.64051 1.41008 1.30442 1.25463 0.90487 0.98056 0.75555 1.87316 1.49621 1.52773 1.33348 0.95183 0.91510 0.93424 0.93404 0.91523 0.95148 0.96381 0.96379 0.93038 0.92303 0.92317 0.76054 0.84396 0.84748 0.85535 0.90524 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.05 37.16 0.30 -1.99 16 2 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16 3 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.48 7.65 -34.44 -0.26 -13.74 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.03 13.29 55.43 0.74 -25.30 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 13 C 0.13 2.13 3.81 -4.04 -0.02 2.12 16 14 N -0.73 -11.12 5.15 -58.52 -0.30 -11.42 16 15 C 0.25 3.76 6.67 -83.59 -0.56 3.20 16 16 C -0.20 -2.55 9.31 -39.38 -0.37 -2.91 16 17 C -0.06 -0.64 10.03 -39.60 -0.40 -1.04 16 18 C -0.17 -2.04 10.06 -39.41 -0.40 -2.43 16 19 C 0.08 1.06 7.14 -39.11 -0.28 0.78 16 20 C -0.07 -0.98 7.00 -38.96 -0.27 -1.25 16 21 O -0.31 -4.35 11.40 -46.08 -0.53 -4.88 16 22 C 0.22 2.24 8.90 101.05 0.90 3.14 16 23 O -0.31 -4.04 11.40 -45.77 -0.52 -4.56 16 24 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 25 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 29 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 33 H 0.06 0.97 7.95 -51.93 -0.41 0.55 16 34 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 35 H 0.40 6.16 6.18 -40.82 -0.25 5.90 16 36 H 0.14 1.71 6.73 -52.49 -0.35 1.35 16 37 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -29.69 323.52 -7.75 -37.44 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.65 Total: 3.07 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -1.34 Total: -15.31 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.44 Total: -36.71 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -1.05 Total: -9.44 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.69 -7.75 -37.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341501698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.896 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds