Wall clock time and date at job start Mon Mar 30 2020 02:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34222 * 116.99764 * 2 1 4 4 O 1.20828 * 120.00410 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99758 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47241 * 204.99831 * 5 3 2 7 7 C 1.53003 * 109.47244 * 84.99688 * 5 3 2 8 8 N 1.46898 * 109.47386 * 324.99992 * 5 3 2 9 9 C 1.46904 * 111.00320 * 179.97438 * 8 5 3 10 10 C 1.50700 * 109.47040 * 179.97438 * 9 8 5 11 11 C 1.38634 * 119.74887 * 269.72631 * 10 9 8 12 12 C 1.37618 * 120.25163 * 179.72272 * 11 10 9 13 13 C 1.40718 * 119.73983 * 0.57178 * 12 11 10 14 14 C 1.41394 * 120.24541 * 179.68259 * 13 12 11 15 15 H 1.08005 * 119.99971 * 204.41200 * 14 13 12 16 16 C 1.39942 * 120.00114 * 24.40644 * 14 13 12 17 17 N 1.30824 * 119.99904 * 17.84456 * 16 14 13 18 18 Si 1.86803 * 120.00117 * 197.85015 * 16 14 13 19 19 H 1.48497 * 109.47418 * 59.99790 * 18 16 14 20 20 H 1.48504 * 109.47056 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46873 * 299.99451 * 18 16 14 22 22 C 1.40719 * 119.51452 * 359.70405 * 13 12 11 23 23 C 1.37616 * 119.74133 * 359.97438 * 22 13 12 24 24 H 1.08995 * 109.46991 * 300.00092 * 1 2 3 25 25 H 1.08994 * 109.46940 * 60.00004 * 1 2 3 26 26 H 1.08996 * 109.47121 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47505 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.47329 * 299.99997 * 6 5 3 29 29 H 1.08992 * 109.47453 * 59.99957 * 6 5 3 30 30 H 1.09000 * 109.47218 * 300.00162 * 7 5 3 31 31 H 1.09004 * 109.46843 * 60.00299 * 7 5 3 32 32 H 1.09003 * 109.47286 * 179.97438 * 7 5 3 33 33 H 1.00893 * 111.00186 * 56.04285 * 8 5 3 34 34 H 1.08991 * 109.46702 * 299.99969 * 9 8 5 35 35 H 1.08996 * 109.46767 * 59.99828 * 9 8 5 36 36 H 1.08005 * 119.87386 * 359.97438 * 11 10 9 37 37 H 1.07999 * 120.13270 * 180.28016 * 12 11 10 38 38 H 0.96998 * 119.99988 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.13068 * 179.97438 * 22 13 12 40 40 H 1.08002 * 119.87926 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0070 2.6072 0.6101 7 6 4.0828 1.1756 -1.4362 8 7 4.1144 0.1677 0.7954 9 6 5.5826 0.2121 0.8180 10 6 6.1073 -0.9359 1.6413 11 6 6.3162 -0.7679 3.0015 12 6 6.7896 -1.8110 3.7642 13 6 7.0732 -3.0479 3.1561 14 6 7.5664 -4.1247 3.9284 15 1 8.1424 -4.9077 3.4576 16 6 7.3083 -4.1759 5.3029 17 7 6.3467 -3.4520 5.8153 18 14 8.3371 -5.2779 6.4060 19 1 9.7623 -4.8691 6.3236 20 1 7.8660 -5.1527 7.8087 21 1 8.2003 -6.6885 5.9625 22 6 6.8628 -3.2052 1.7737 23 6 6.3824 -2.1503 1.0319 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 5.0955 2.6645 0.6101 28 1 3.6003 3.4288 0.0203 29 1 3.6391 2.6779 1.6336 30 1 3.7689 0.2264 -1.8704 31 1 3.6762 1.9972 -2.0260 32 1 5.1713 1.2331 -1.4358 33 1 3.7852 -0.7219 0.4516 34 1 5.9641 0.1338 -0.2000 35 1 5.9108 1.1539 1.2576 36 1 6.1027 0.1839 3.4650 37 1 6.9473 -1.6794 4.8245 38 1 6.1680 -3.4872 6.7680 39 1 7.0776 -4.1500 1.2967 40 1 6.2205 -2.2684 -0.0294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343519113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:07 Heat of formation + Delta-G solvation = -72.316706 kcal Electronic energy + Delta-G solvation = -21217.257676 eV Core-core repulsion = 17996.503447 eV Total energy + Delta-G solvation = -3220.754229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.68887 -38.08759 -37.01122 -36.30134 -33.83463 -31.57820 -29.40357 -29.03615 -28.11322 -27.40581 -26.27332 -24.15934 -22.44210 -20.95128 -19.98039 -19.50986 -17.62809 -17.28497 -16.92652 -16.36831 -15.31160 -14.93980 -14.71212 -14.35470 -13.94633 -13.71937 -13.53536 -13.24178 -12.89334 -12.68057 -12.48668 -12.25140 -12.02720 -11.91894 -11.89018 -11.55948 -11.44151 -11.28241 -11.03394 -10.91039 -10.80934 -10.49938 -10.38369 -10.28852 -9.60222 -9.35722 -9.11425 -8.19644 -7.42975 -7.30027 -6.75071 -4.34468 2.17415 2.70075 2.76747 3.06695 3.09091 3.09633 3.19384 3.93289 4.29071 4.61310 4.72083 4.80437 4.94077 5.04920 5.12580 5.39785 5.45745 5.50594 5.66839 5.70819 5.76533 5.82407 5.90379 5.96021 6.18567 6.26781 6.35860 6.38576 6.45626 6.97002 7.07844 7.19016 7.31133 7.36632 7.60311 7.63910 7.76323 7.89339 8.06629 8.15506 8.31436 8.65774 8.90479 8.99140 10.19053 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027214 B = 0.003637 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.644757 B = 7695.861733 C = 8006.445153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.481 3.519 4 O -0.513 6.513 5 C 0.120 3.880 6 C -0.132 4.132 7 C -0.181 4.181 8 N -0.667 5.667 9 C 0.120 3.880 10 C -0.216 4.216 11 C -0.078 4.078 12 C -0.168 4.168 13 C 0.114 3.886 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.790 5.790 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.228 4.228 23 C -0.083 4.083 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.352 0.648 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.281 0.719 39 H 0.090 0.910 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.723 6.802 -9.178 12.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.265 6.265 3 C 0.324 3.676 4 O -0.400 6.400 5 C 0.028 3.972 6 C -0.189 4.189 7 C -0.240 4.240 8 N -0.301 5.301 9 C -0.007 4.007 10 C -0.217 4.217 11 C -0.097 4.097 12 C -0.188 4.188 13 C 0.111 3.889 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.415 5.415 18 Si 0.731 3.269 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.248 4.248 23 C -0.102 4.102 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.172 0.828 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.174 7.473 -8.350 12.794 hybrid contribution 0.231 -0.863 -0.292 0.940 sum -5.944 6.609 -8.642 12.397 Atomic orbital electron populations 1.23251 0.76684 1.03702 1.02209 1.86547 1.23119 1.33373 1.83487 1.23726 0.91562 0.81269 0.71048 1.90629 1.66871 1.36542 1.45957 1.20835 0.86071 0.96271 0.94064 1.21797 1.01985 0.93270 1.01869 1.22545 1.03265 1.02909 0.95284 1.60914 1.10176 1.04949 1.54056 1.20719 0.84846 0.98151 0.96953 1.18842 1.13702 0.94931 0.94260 1.20499 0.98867 0.97436 0.92857 1.21310 1.05451 0.92316 0.99683 1.17619 0.87983 0.92251 0.91043 1.19577 1.30208 1.07193 0.92368 0.90546 1.25906 0.93781 0.95559 0.98902 1.69826 1.23024 1.34247 1.14428 0.86391 0.81091 0.80787 0.78582 1.18833 1.20339 1.19039 1.20923 1.11033 0.97552 0.95258 1.20351 0.99748 0.93328 0.96780 0.91903 0.92255 0.88074 0.90781 0.91420 0.91206 0.91628 0.91659 0.90020 0.82787 0.95500 0.91325 0.89471 0.86544 0.90805 0.89186 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.35 -4.85 9.82 -39.24 -0.39 -5.24 16 3 C 0.48 7.08 6.81 36.01 0.25 7.32 16 4 O -0.51 -8.33 15.84 -18.75 -0.30 -8.63 16 5 C 0.12 1.63 0.93 -132.75 -0.12 1.50 16 6 C -0.13 -1.67 7.77 37.16 0.29 -1.38 16 7 C -0.18 -2.02 8.21 37.16 0.31 -1.71 16 8 N -0.67 -10.53 6.01 -102.40 -0.62 -11.15 16 9 C 0.12 1.97 5.02 -4.97 -0.02 1.95 16 10 C -0.22 -4.49 5.41 -104.33 -0.56 -5.06 16 11 C -0.08 -1.79 9.67 -39.66 -0.38 -2.17 16 12 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 13 C 0.11 3.00 5.58 -106.82 -0.60 2.41 16 14 C -0.46 -12.26 9.05 -37.74 -0.34 -12.60 16 15 H 0.08 1.94 7.91 -52.48 -0.41 1.52 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 17 N -0.79 -20.45 10.95 55.55 0.61 -19.84 16 18 Si 0.91 18.56 29.60 -169.99 -5.03 13.53 16 19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.23 -5.51 9.80 -38.87 -0.38 -5.89 16 23 C -0.08 -1.79 9.67 -39.66 -0.38 -2.18 16 24 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 25 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 26 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.85 6.41 -51.93 -0.33 0.52 16 28 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.86 6.40 -51.93 -0.33 0.53 16 33 H 0.35 5.71 8.16 -39.30 -0.32 5.39 16 34 H 0.03 0.40 6.24 -51.93 -0.32 0.08 16 35 H 0.07 1.08 6.24 -51.93 -0.32 0.75 16 36 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 37 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 38 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 39 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.08 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 332.54 15.07 5.01 5.01 Total: -1.00 -28.54 332.54 -7.75 -36.29 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.72 Total: 9.24 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.32 Total: -19.22 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: -0.01 Total: -30.99 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.68 Total: -13.87 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.54 -7.75 -36.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343519113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.029 kcal (2) G-P(sol) polarization free energy of solvation -28.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds