Wall clock time and date at job start Mon Mar 30 2020 02:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47434 * 2 1 4 4 C 1.53000 * 109.47561 * 120.00502 * 2 1 3 5 5 O 1.42896 * 109.47632 * 174.99656 * 4 2 1 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 2 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.47202 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99802 * 0.02562 * 14 13 12 16 16 C 1.37868 * 119.99960 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00045 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00183 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47362 * 89.99512 * 18 16 14 20 20 H 1.48498 * 109.47045 * 209.99957 * 18 16 14 21 21 H 1.48498 * 109.46641 * 329.99635 * 18 16 14 22 22 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 23 23 C 1.37709 * 119.90833 * 359.97438 * 22 9 8 24 24 H 1.08999 * 109.46996 * 299.99733 * 1 2 3 25 25 H 1.08997 * 109.47347 * 59.99746 * 1 2 3 26 26 H 1.09001 * 109.47381 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46810 * 239.99971 * 2 1 3 28 28 H 1.08997 * 109.47061 * 300.00429 * 3 2 1 29 29 H 1.08999 * 109.46811 * 60.00154 * 3 2 1 30 30 H 1.09000 * 109.47358 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.46974 * 54.99048 * 4 2 1 32 32 H 1.09005 * 109.46584 * 295.00094 * 4 2 1 33 33 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 34 34 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 35 35 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 36 36 H 1.08999 * 109.46594 * 299.99752 * 13 12 10 37 37 H 1.08991 * 109.46752 * 59.99612 * 13 12 10 38 38 H 0.97000 * 119.99888 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.04691 * 180.02562 * 22 9 8 40 40 H 1.07999 * 119.95155 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 3.4642 -0.8240 1.1919 6 6 4.0797 -1.4417 2.2316 7 6 3.3244 -1.9451 3.2843 8 6 3.9456 -2.5679 4.3438 9 6 5.3363 -2.7039 4.3541 10 6 6.0057 -3.3766 5.4845 11 8 5.3469 -3.8138 6.4082 12 7 7.3471 -3.5063 5.4929 13 6 8.0116 -4.1746 6.6147 14 6 9.5003 -4.1879 6.3810 15 1 9.9105 -3.7428 5.4867 16 6 10.3385 -4.7684 7.3090 17 7 9.8389 -5.3101 8.3984 18 14 12.1839 -4.7844 7.0199 19 1 12.7877 -3.5614 7.6072 20 1 12.7752 -5.9858 7.6620 21 1 12.4559 -4.8188 5.5604 22 6 6.0916 -2.2015 3.2912 23 6 5.4632 -1.5752 2.2380 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6053 -1.7199 1.2951 32 1 1.7517 -0.1584 2.1369 33 1 2.2492 -1.8437 3.2736 34 1 3.3584 -2.9549 5.1635 35 1 7.8727 -3.1578 4.7558 36 1 7.7931 -3.6381 7.5380 37 1 7.6474 -5.1988 6.6946 38 1 10.4287 -5.7182 9.0515 39 1 7.1666 -2.3049 3.2953 40 1 6.0462 -1.1871 1.4159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343895960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:01 Heat of formation + Delta-G solvation = -71.629732 kcal Electronic energy + Delta-G solvation = -20277.730445 eV Core-core repulsion = 17057.006005 eV Total energy + Delta-G solvation = -3220.724440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40109 -39.00543 -37.22998 -35.47580 -34.24398 -32.41350 -31.05908 -30.21539 -27.58201 -27.27798 -26.82042 -23.61870 -22.73107 -21.97582 -20.56443 -19.74434 -18.47220 -17.62746 -16.53150 -16.10020 -15.83023 -15.12560 -14.89426 -14.67601 -14.39253 -14.28810 -14.08721 -13.58349 -13.50292 -13.10586 -12.77711 -12.68449 -12.48343 -12.26287 -11.94766 -11.86723 -11.51676 -11.46203 -11.22624 -10.98002 -10.92345 -10.82959 -10.76850 -10.31358 -9.39461 -9.15658 -9.08471 -8.73460 -8.28117 -7.83257 -6.15928 -4.22921 1.06735 1.34271 2.92146 3.25122 3.28390 3.31140 3.33610 4.08300 4.17782 4.33405 4.38097 4.39988 4.64158 4.74225 4.79046 4.98706 5.02329 5.13485 5.20226 5.23268 5.27791 5.35819 5.42164 5.45137 5.49751 5.57633 5.63941 5.84161 5.91520 5.98233 6.19945 6.29458 6.48636 6.62825 7.24703 7.32547 7.42644 7.52525 7.67235 7.97339 8.61946 8.78091 9.08531 9.43542 10.94292 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042774 B = 0.002718 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.439709 B =10300.240130 C =10849.324349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.148 4.148 4 C 0.061 3.939 5 O -0.312 6.312 6 C 0.144 3.856 7 C -0.220 4.220 8 C -0.024 4.024 9 C -0.160 4.160 10 C 0.542 3.458 11 O -0.556 6.556 12 N -0.706 5.706 13 C 0.249 3.751 14 C -0.543 4.543 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.048 4.048 23 C -0.160 4.160 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.390 0.610 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.136 0.864 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.772 11.406 -17.678 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.014 4.014 5 O -0.225 6.225 6 C 0.098 3.902 7 C -0.238 4.238 8 C -0.043 4.043 9 C -0.163 4.163 10 C 0.328 3.672 11 O -0.437 6.437 12 N -0.354 5.354 13 C 0.128 3.872 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.067 4.067 23 C -0.179 4.179 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.223 0.777 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.154 0.846 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.068 11.060 -16.989 25.868 hybrid contribution 1.097 0.025 -0.238 1.122 sum -14.971 11.085 -17.227 25.373 Atomic orbital electron populations 1.21787 0.93790 1.02280 1.02542 1.21129 0.95815 0.97015 0.97390 1.21827 1.02035 0.94903 1.01736 1.22951 0.78683 1.00538 0.99262 1.85990 1.21683 1.73305 1.41550 1.19189 0.92313 0.91932 0.86733 1.21174 1.00080 1.06463 0.96113 1.21075 0.93462 0.93115 0.96634 1.20193 0.94426 1.04701 0.97008 1.18149 0.83075 0.80143 0.85835 1.90726 1.64985 1.50605 1.37364 1.46418 1.05618 1.57948 1.25435 1.19146 0.91323 0.92819 0.83881 1.21215 0.90838 1.39312 1.06804 0.91877 1.24953 0.99462 0.94813 0.94811 1.69977 1.35621 1.37016 1.09634 0.86404 0.84327 0.77686 0.78435 1.20450 1.21006 1.19731 1.21219 1.00069 0.93746 0.91648 1.20314 0.91289 1.05342 1.00924 0.92269 0.91708 0.92285 0.90044 0.92508 0.92672 0.91757 0.91847 0.91805 0.85238 0.84446 0.77652 0.95342 0.95338 0.92437 0.84618 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.19 37.15 0.34 -0.38 16 2 C -0.09 -0.62 3.16 -90.62 -0.29 -0.91 16 3 C -0.15 -0.98 9.09 37.16 0.34 -0.64 16 4 C 0.06 0.49 4.11 37.16 0.15 0.64 16 5 O -0.31 -3.40 9.66 -18.81 -0.18 -3.58 16 6 C 0.14 1.77 6.70 -39.02 -0.26 1.51 16 7 C -0.22 -2.69 9.01 -39.49 -0.36 -3.05 16 8 C -0.02 -0.35 9.58 -39.22 -0.38 -0.73 16 9 C -0.16 -2.67 5.87 -104.96 -0.62 -3.29 16 10 C 0.54 11.55 7.76 -12.44 -0.10 11.45 16 11 O -0.56 -13.92 16.34 5.29 0.09 -13.83 16 12 N -0.71 -15.42 5.50 -62.51 -0.34 -15.76 16 13 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 14 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 15 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 18 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 C -0.05 -0.66 9.53 -39.22 -0.37 -1.04 16 23 C -0.16 -1.98 9.97 -39.50 -0.39 -2.37 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.50 7.82 -51.93 -0.41 0.10 16 31 H 0.06 0.47 7.64 -51.93 -0.40 0.07 16 32 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 33 H 0.13 1.25 6.28 -52.48 -0.33 0.92 16 34 H 0.14 2.05 7.64 -52.49 -0.40 1.65 16 35 H 0.39 7.25 6.34 -40.82 -0.26 6.99 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.14 1.66 6.39 -52.48 -0.34 1.32 16 40 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -32.54 338.67 -7.86 -40.39 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.86 Total: 2.86 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -2.37 Total: -5.62 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.39 Total: -41.22 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.10 Total: -17.41 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.54 -7.86 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343895960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.235 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds