Wall clock time and date at job start Mon Mar 30 2020 02:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47434 * 2 1 4 4 C 1.53000 * 109.47561 * 120.00502 * 2 1 3 5 5 O 1.42896 * 109.47632 * 174.99656 * 4 2 1 6 6 C 1.35703 * 117.00248 * 179.97438 * 5 4 2 7 7 C 1.39001 * 119.91238 * 0.30191 * 6 5 4 8 8 C 1.37701 * 120.09036 * 180.25651 * 7 6 5 9 9 C 1.39740 * 119.91009 * 359.43945 * 8 7 6 10 10 C 1.47594 * 120.08984 * 180.30153 * 9 8 7 11 11 O 1.21587 * 119.99976 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00311 * 180.02562 * 10 9 8 13 13 C 1.46507 * 120.00361 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.47202 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99802 * 0.02562 * 14 13 12 16 16 C 1.37868 * 119.99960 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00045 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00183 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47362 * 89.99512 * 18 16 14 20 20 H 1.48498 * 109.47045 * 209.99957 * 18 16 14 21 21 H 1.48498 * 109.46641 * 329.99635 * 18 16 14 22 22 C 1.39733 * 119.82362 * 0.28485 * 9 8 7 23 23 C 1.37709 * 119.90833 * 359.97438 * 22 9 8 24 24 H 1.08999 * 109.46996 * 299.99733 * 1 2 3 25 25 H 1.08997 * 109.47347 * 59.99746 * 1 2 3 26 26 H 1.09001 * 109.47381 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46810 * 239.99971 * 2 1 3 28 28 H 1.08997 * 109.47061 * 300.00429 * 3 2 1 29 29 H 1.08999 * 109.46811 * 60.00154 * 3 2 1 30 30 H 1.09000 * 109.47358 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.46974 * 54.99048 * 4 2 1 32 32 H 1.09005 * 109.46584 * 295.00094 * 4 2 1 33 33 H 1.08004 * 119.95747 * 359.97438 * 7 6 5 34 34 H 1.08002 * 120.04909 * 179.72495 * 8 7 6 35 35 H 0.97004 * 119.99698 * 359.97438 * 12 10 9 36 36 H 1.08999 * 109.46594 * 299.99752 * 13 12 10 37 37 H 1.08991 * 109.46752 * 59.99612 * 13 12 10 38 38 H 0.97000 * 119.99888 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.04691 * 180.02562 * 22 9 8 40 40 H 1.07999 * 119.95155 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 3.4642 -0.8240 1.1919 6 6 4.0797 -1.4417 2.2316 7 6 3.3244 -1.9451 3.2843 8 6 3.9456 -2.5679 4.3438 9 6 5.3363 -2.7039 4.3541 10 6 6.0057 -3.3766 5.4845 11 8 5.3469 -3.8138 6.4082 12 7 7.3471 -3.5063 5.4929 13 6 8.0116 -4.1746 6.6147 14 6 9.5003 -4.1879 6.3810 15 1 9.9105 -3.7428 5.4867 16 6 10.3385 -4.7684 7.3090 17 7 9.8389 -5.3101 8.3984 18 14 12.1839 -4.7844 7.0199 19 1 12.7877 -3.5614 7.6072 20 1 12.7752 -5.9858 7.6620 21 1 12.4559 -4.8188 5.5604 22 6 6.0916 -2.2015 3.2912 23 6 5.4632 -1.5752 2.2380 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6053 -1.7199 1.2951 32 1 1.7517 -0.1584 2.1369 33 1 2.2492 -1.8437 3.2736 34 1 3.3584 -2.9549 5.1635 35 1 7.8727 -3.1578 4.7558 36 1 7.7931 -3.6381 7.5380 37 1 7.6474 -5.1988 6.6946 38 1 10.4287 -5.7182 9.0515 39 1 7.1666 -2.3049 3.2953 40 1 6.0462 -1.1871 1.4159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343895960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:01 Heat of formation + Delta-G solvation = -92.396502 kcal Electronic energy + Delta-G solvation = -20278.630960 eV Core-core repulsion = 17057.006005 eV Total energy + Delta-G solvation = -3221.624955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.46589 -40.44501 -38.35008 -36.22749 -36.12570 -34.42738 -32.14626 -31.47895 -29.12115 -28.03225 -27.63232 -25.31647 -23.79673 -23.51900 -21.50178 -21.02480 -19.62848 -19.04867 -17.86632 -17.38912 -17.08670 -16.63955 -16.28480 -16.15026 -15.75739 -15.32571 -14.90626 -14.88075 -14.52176 -14.22727 -14.09204 -13.93324 -13.56293 -13.48022 -13.27746 -12.96627 -12.92229 -12.71538 -12.23104 -12.21334 -12.03195 -12.00622 -11.57807 -11.50999 -11.48653 -10.94203 -10.81363 -10.12873 -9.94021 -9.25507 -8.29369 -6.46369 -0.11760 0.30094 1.43624 1.46404 1.57610 1.88613 2.11332 2.30794 2.54439 2.84388 3.05623 3.68397 3.79339 3.83767 3.87797 3.95436 4.13627 4.18226 4.32453 4.45598 4.51526 4.57759 4.68723 4.81611 4.96321 5.00565 5.02573 5.04001 5.14672 5.20869 5.21673 5.24154 5.36325 5.38934 5.42244 5.45100 5.59129 5.68789 5.82813 6.34748 6.63210 6.84860 7.21562 7.40800 8.82975 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042774 B = 0.002718 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.439709 B =10300.240130 C =10849.324349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.148 4.148 4 C 0.050 3.950 5 O -0.314 6.314 6 C 0.155 3.845 7 C -0.213 4.213 8 C -0.031 4.031 9 C -0.188 4.188 10 C 0.540 3.460 11 O -0.604 6.604 12 N -0.701 5.701 13 C 0.265 3.735 14 C -0.557 4.557 15 H 0.085 0.915 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.987 3.013 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.255 1.255 22 C -0.041 4.041 23 C -0.158 4.158 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.158 0.842 34 H 0.128 0.872 35 H 0.407 0.593 36 H -0.010 1.010 37 H -0.010 1.010 38 H 0.269 0.731 39 H 0.150 0.850 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.570 12.925 -20.606 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.024 4.024 5 O -0.227 6.227 6 C 0.108 3.892 7 C -0.231 4.231 8 C -0.050 4.050 9 C -0.192 4.192 10 C 0.330 3.670 11 O -0.488 6.488 12 N -0.351 5.351 13 C 0.143 3.857 14 C -0.594 4.594 15 H 0.103 0.897 16 C -0.197 4.197 17 N -0.569 5.569 18 Si 0.810 3.190 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.178 1.178 22 C -0.060 4.060 23 C -0.177 4.177 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.176 0.824 34 H 0.146 0.854 35 H 0.244 0.756 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.078 0.922 39 H 0.168 0.832 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.880 12.612 -19.976 28.466 hybrid contribution 0.857 -0.372 0.574 1.097 sum -15.023 12.240 -19.403 27.422 Atomic orbital electron populations 1.21778 0.92436 1.02790 1.03143 1.21146 0.96824 0.96610 0.96507 1.21831 1.01123 0.95204 1.02373 1.23270 0.77061 1.01589 1.00496 1.86018 1.23430 1.72506 1.40715 1.19347 0.92549 0.90601 0.86654 1.21354 1.01496 1.05282 0.94965 1.21091 0.92789 0.93687 0.97412 1.19833 0.95185 1.07469 0.96692 1.18902 0.82520 0.79130 0.86475 1.90685 1.65829 1.52673 1.39646 1.46124 1.06207 1.57981 1.24760 1.18607 0.92267 0.90564 0.84288 1.21598 0.90708 1.39422 1.07700 0.89682 1.26094 1.05382 0.93973 0.94232 1.70143 1.37885 1.37983 1.10886 0.85123 0.76919 0.77750 0.79222 1.19548 1.20936 1.17818 1.21317 1.00657 0.93048 0.90949 1.20568 0.91701 1.04491 1.00893 0.91914 0.90921 0.91843 0.90279 0.91496 0.92508 0.93128 0.90794 0.90961 0.82448 0.85419 0.75576 0.99249 0.99238 0.92206 0.83236 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.19 71.98 0.66 -0.37 16 2 C -0.09 -0.96 3.16 -10.80 -0.03 -1.00 16 3 C -0.15 -1.62 9.09 71.98 0.65 -0.96 16 4 C 0.05 0.66 4.11 71.98 0.30 0.95 16 5 O -0.31 -5.86 9.66 -90.23 -0.87 -6.74 16 6 C 0.16 3.37 6.70 22.63 0.15 3.52 16 7 C -0.21 -4.75 9.01 22.33 0.20 -4.55 16 8 C -0.03 -0.90 9.58 22.51 0.22 -0.69 16 9 C -0.19 -6.31 5.87 -20.08 -0.12 -6.43 16 10 C 0.54 24.03 7.76 86.71 0.67 24.70 16 11 O -0.60 -32.21 16.34 -3.99 -0.07 -32.27 16 12 N -0.70 -31.64 5.50 -469.95 -2.58 -34.23 16 13 C 0.27 15.05 5.43 85.63 0.46 15.52 16 14 C -0.56 -30.76 9.28 25.60 0.24 -30.52 16 15 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 16 C 0.00 0.16 5.46 84.65 0.46 0.62 16 17 N -0.93 -56.74 13.29 21.44 0.28 -56.45 16 18 Si 0.99 42.60 29.54 68.60 2.03 44.62 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 22 C -0.04 -1.07 9.53 22.51 0.21 -0.86 16 23 C -0.16 -3.46 9.97 22.33 0.22 -3.24 16 24 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.07 0.42 8.14 -2.39 -0.02 0.41 16 26 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.69 7.82 -2.39 -0.02 0.67 16 31 H 0.07 0.84 7.64 -2.38 -0.02 0.82 16 32 H 0.07 0.85 7.66 -2.38 -0.02 0.84 16 33 H 0.16 2.56 6.28 -2.91 -0.02 2.54 16 34 H 0.13 3.95 7.64 -2.91 -0.02 3.93 16 35 H 0.41 15.12 6.34 -92.71 -0.59 14.53 16 36 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.67 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.15 3.37 6.39 -2.91 -0.02 3.35 16 40 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -73.46 338.67 3.54 -69.92 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.45 Total: 18.44 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 4.30 Total: -3.29 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -2.30 Total: -90.68 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -0.94 Total: -39.01 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -73.46 3.54 -69.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343895960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.476 kcal (2) G-P(sol) polarization free energy of solvation -73.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds