Wall clock time and date at job start Mon Mar 30 2020 01:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99811 * 2 1 4 4 C 1.53005 * 109.46954 * 60.00141 * 3 2 1 5 5 C 1.53006 * 109.47223 * 300.00264 * 3 2 1 6 6 C 1.52995 * 109.47299 * 180.02562 * 3 2 1 7 7 C 1.50705 * 109.46822 * 303.03181 * 6 3 2 8 8 O 1.21285 * 119.99897 * 5.33382 * 7 6 3 9 9 N 1.34780 * 119.99875 * 185.33970 * 7 6 3 10 10 C 1.39126 * 119.99734 * 184.22328 * 9 7 6 11 11 C 1.38639 * 120.28769 * 325.42935 * 10 9 7 12 12 C 1.38228 * 120.03306 * 180.25501 * 11 10 9 13 13 C 1.38864 * 120.61550 * 359.74168 * 12 11 10 14 14 C 1.36468 * 120.57796 * 359.97438 * 13 12 11 15 15 C 1.40738 * 119.94065 * 0.02562 * 14 13 12 16 16 C 1.41072 * 120.30059 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00289 * 154.79239 * 16 15 14 18 18 C 1.39960 * 119.99564 * 334.78780 * 16 15 14 19 19 N 1.30853 * 120.00267 * 334.77292 * 18 16 15 20 20 Si 1.86805 * 119.99842 * 154.77972 * 18 16 15 21 21 H 1.48500 * 109.46903 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46773 * 299.99585 * 20 18 16 23 23 H 1.48498 * 109.47111 * 59.99716 * 20 18 16 24 24 H 1.08995 * 109.47504 * 60.00047 * 1 2 3 25 25 H 1.09009 * 109.47001 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47141 * 299.99275 * 1 2 3 27 27 H 1.09004 * 109.46663 * 180.02562 * 4 3 2 28 28 H 1.08999 * 109.47183 * 300.00043 * 4 3 2 29 29 H 1.08999 * 109.46897 * 60.00091 * 4 3 2 30 30 H 1.09002 * 109.47043 * 305.15000 * 5 3 2 31 31 H 1.09001 * 109.47071 * 65.14349 * 5 3 2 32 32 H 1.08994 * 109.46940 * 185.14342 * 5 3 2 33 33 H 1.08998 * 109.47589 * 183.03188 * 6 3 2 34 34 H 1.09006 * 109.47051 * 63.02441 * 6 3 2 35 35 H 0.97000 * 120.00098 * 4.22666 * 9 7 6 36 36 H 1.07998 * 119.98415 * 359.96910 * 11 10 9 37 37 H 1.08001 * 119.69193 * 179.75597 * 12 11 10 38 38 H 1.07996 * 119.71239 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.02690 * 180.02562 * 14 13 12 40 40 H 0.97005 * 119.99914 * 354.56147 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1848 -0.0006 7 6 3.9755 0.3728 1.1903 8 8 3.1483 -0.1472 1.9088 9 7 5.2883 0.2246 1.4568 10 6 5.6973 -0.5961 2.5031 11 6 4.9348 -0.6901 3.6572 12 6 5.3488 -1.5031 4.6956 13 6 6.5241 -2.2359 4.5948 14 6 7.2909 -2.1666 3.4680 15 6 6.8919 -1.3464 2.3962 16 6 7.6790 -1.2686 1.2281 17 1 7.2233 -0.9993 0.2867 18 6 9.0506 -1.5404 1.2892 19 7 9.6996 -1.3816 2.4143 20 14 9.9548 -2.1299 -0.2354 21 1 11.3876 -2.3444 0.0908 22 1 9.3567 -3.4060 -0.7032 23 1 9.8390 -1.1072 -1.3059 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 2.0017 3.0607 1.2490 28 1 0.4721 2.1507 1.2493 29 1 1.8804 1.5237 2.1392 30 1 1.7993 1.4797 -2.1369 31 1 0.4823 2.2307 -1.2043 32 1 2.0727 3.0248 -1.2965 33 1 3.9787 2.1791 0.0537 34 1 3.8605 0.6915 -0.9168 35 1 5.9480 0.6902 0.9192 36 1 4.0193 -0.1244 3.7467 37 1 4.7526 -1.5692 5.5937 38 1 6.8336 -2.8667 5.4148 39 1 8.2030 -2.7406 3.3989 40 1 9.2491 -1.0010 3.1845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344339964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:16 Heat of formation + Delta-G solvation = -71.646561 kcal Electronic energy + Delta-G solvation = -21899.244012 eV Core-core repulsion = 18678.518842 eV Total energy + Delta-G solvation = -3220.725170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.92082 -38.49914 -37.08440 -33.91451 -33.66301 -33.23382 -29.41321 -29.22046 -27.71228 -27.37885 -26.29265 -24.96461 -21.82152 -20.95908 -19.90804 -19.27693 -17.97185 -16.93357 -16.14190 -16.05971 -15.19866 -14.96386 -14.78580 -14.56215 -14.12596 -13.64168 -13.48288 -13.27635 -12.82928 -12.53203 -12.31743 -12.17263 -12.04642 -11.94491 -11.75763 -11.51029 -11.42850 -11.15591 -10.92201 -10.64958 -10.49147 -10.42525 -10.23632 -9.62092 -9.43294 -9.20008 -8.94365 -8.69491 -7.56968 -7.34372 -6.89476 -4.43199 2.65234 2.84367 3.13627 3.25769 3.34621 3.44799 3.90719 3.95962 3.99707 4.58198 4.70215 4.94073 5.01043 5.34424 5.41834 5.42881 5.48097 5.55300 5.56732 5.59986 5.67462 5.77471 5.85276 6.00004 6.07635 6.24495 6.37266 6.47587 6.53911 6.90279 7.01145 7.21883 7.41644 7.44013 7.59406 7.77244 7.83761 7.97325 8.07807 8.28542 8.44355 8.74782 8.83753 9.10382 10.03442 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.005152 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.839010 B = 5433.371968 C = 6424.091532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.129 3.871 4 C -0.184 4.184 5 C -0.178 4.178 6 C -0.129 4.129 7 C 0.499 3.501 8 O -0.519 6.519 9 N -0.643 5.643 10 C 0.012 3.988 11 C -0.074 4.074 12 C -0.241 4.241 13 C -0.094 4.094 14 C -0.208 4.208 15 C 0.089 3.911 16 C -0.526 4.526 17 H 0.074 0.926 18 C 0.041 3.959 19 N -0.797 5.797 20 Si 1.064 2.936 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.277 1.277 24 H 0.036 0.964 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.400 0.600 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.998 7.134 -6.698 13.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.089 3.911 4 C -0.241 4.241 5 C -0.235 4.235 6 C -0.169 4.169 7 C 0.286 3.714 8 O -0.395 6.395 9 N -0.286 5.286 10 C -0.081 4.081 11 C -0.094 4.094 12 C -0.261 4.261 13 C -0.113 4.113 14 C -0.228 4.228 15 C 0.085 3.915 16 C -0.554 4.554 17 H 0.092 0.908 18 C -0.181 4.181 19 N -0.420 5.420 20 Si 0.887 3.113 21 H -0.199 1.199 22 H -0.201 1.201 23 H -0.202 1.202 24 H 0.054 0.946 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.235 0.765 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.978 6.110 -6.721 12.771 hybrid contribution -1.394 0.920 0.269 1.692 sum -10.371 7.030 -6.451 14.093 Atomic orbital electron populations 1.22696 0.82409 1.02242 0.99381 1.88131 1.18551 1.26112 1.94749 1.21089 0.91894 0.84047 0.94054 1.22545 1.01154 1.00322 1.00102 1.22445 1.01802 1.00931 0.98369 1.21732 0.94704 1.01516 0.98939 1.20362 0.82646 0.82077 0.86329 1.90633 1.51735 1.47803 1.49379 1.42905 1.06690 1.46192 1.32839 1.17609 1.00888 1.00713 0.88910 1.20680 0.98346 0.98727 0.91664 1.20256 0.99747 1.06702 0.99346 1.20379 0.95055 0.98786 0.97054 1.20738 1.02550 1.03966 0.95584 1.17503 0.91703 0.89085 0.93208 1.20310 0.95085 1.44405 0.95646 0.90819 1.26951 0.95609 0.92689 1.02875 1.70466 1.40831 1.27149 1.03547 0.83652 0.76358 0.77633 0.73607 1.19898 1.20063 1.20219 0.94601 0.90161 0.94054 0.92311 0.92674 0.89506 0.91683 0.92133 0.91455 0.88254 0.88397 0.76509 0.87201 0.89150 0.89304 0.87459 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.21 101.05 1.03 1.39 16 2 O -0.36 -5.73 8.91 -55.88 -0.50 -6.23 16 3 C 0.13 1.72 0.71 -90.62 -0.06 1.66 16 4 C -0.18 -2.40 7.97 37.16 0.30 -2.10 16 5 C -0.18 -1.77 8.09 37.16 0.30 -1.47 16 6 C -0.13 -1.80 4.97 -27.88 -0.14 -1.94 16 7 C 0.50 9.58 7.17 -10.98 -0.08 9.50 16 8 O -0.52 -11.56 10.60 -15.10 -0.16 -11.72 16 9 N -0.64 -13.28 4.90 -9.47 -0.05 -13.33 16 10 C 0.01 0.31 6.34 -83.17 -0.53 -0.22 16 11 C -0.07 -1.80 8.69 -39.44 -0.34 -2.15 16 12 C -0.24 -5.69 10.04 -39.35 -0.39 -6.09 16 13 C -0.09 -2.24 9.97 -39.99 -0.40 -2.64 16 14 C -0.21 -5.37 7.88 -39.28 -0.31 -5.68 16 15 C 0.09 2.32 5.32 -106.65 -0.57 1.76 16 16 C -0.53 -13.32 8.35 -37.86 -0.32 -13.64 16 17 H 0.07 1.79 7.39 -52.49 -0.39 1.40 16 18 C 0.04 1.00 4.95 -17.32 -0.09 0.92 16 19 N -0.80 -20.58 12.32 55.55 0.68 -19.89 16 20 Si 1.06 20.99 30.00 -169.99 -5.10 15.89 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 24 H 0.04 0.36 6.53 -51.93 -0.34 0.02 16 25 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 26 H 0.04 0.48 6.42 -51.93 -0.33 0.15 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.63 6.54 -51.93 -0.34 0.29 16 29 H 0.09 1.42 5.98 -51.93 -0.31 1.11 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.55 6.83 -51.93 -0.35 0.19 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.40 7.41 7.95 -40.82 -0.32 7.08 16 36 H 0.11 2.64 6.20 -52.49 -0.33 2.31 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.11 2.82 6.45 -52.49 -0.34 2.48 16 40 H 0.30 7.98 6.63 -40.82 -0.27 7.70 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -30.13 320.56 -7.39 -37.51 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -5.50 Total: 13.64 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -1.59 Total: -20.70 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.64 Total: -33.22 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.66 Total: -17.95 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.10 Total: 15.89 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.13 -7.39 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344339964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.133 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds