Wall clock time and date at job start Mon Mar 30 2020 01:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99811 * 2 1 4 4 C 1.53005 * 109.46954 * 60.00141 * 3 2 1 5 5 C 1.53006 * 109.47223 * 300.00264 * 3 2 1 6 6 C 1.52995 * 109.47299 * 180.02562 * 3 2 1 7 7 C 1.50705 * 109.46822 * 303.03181 * 6 3 2 8 8 O 1.21285 * 119.99897 * 5.33382 * 7 6 3 9 9 N 1.34780 * 119.99875 * 185.33970 * 7 6 3 10 10 C 1.39126 * 119.99734 * 184.22328 * 9 7 6 11 11 C 1.38639 * 120.28769 * 325.42935 * 10 9 7 12 12 C 1.38228 * 120.03306 * 180.25501 * 11 10 9 13 13 C 1.38864 * 120.61550 * 359.74168 * 12 11 10 14 14 C 1.36468 * 120.57796 * 359.97438 * 13 12 11 15 15 C 1.40738 * 119.94065 * 0.02562 * 14 13 12 16 16 C 1.41072 * 120.30059 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00289 * 154.79239 * 16 15 14 18 18 C 1.39960 * 119.99564 * 334.78780 * 16 15 14 19 19 N 1.30853 * 120.00267 * 334.77292 * 18 16 15 20 20 Si 1.86805 * 119.99842 * 154.77972 * 18 16 15 21 21 H 1.48500 * 109.46903 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.46773 * 299.99585 * 20 18 16 23 23 H 1.48498 * 109.47111 * 59.99716 * 20 18 16 24 24 H 1.08995 * 109.47504 * 60.00047 * 1 2 3 25 25 H 1.09009 * 109.47001 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47141 * 299.99275 * 1 2 3 27 27 H 1.09004 * 109.46663 * 180.02562 * 4 3 2 28 28 H 1.08999 * 109.47183 * 300.00043 * 4 3 2 29 29 H 1.08999 * 109.46897 * 60.00091 * 4 3 2 30 30 H 1.09002 * 109.47043 * 305.15000 * 5 3 2 31 31 H 1.09001 * 109.47071 * 65.14349 * 5 3 2 32 32 H 1.08994 * 109.46940 * 185.14342 * 5 3 2 33 33 H 1.08998 * 109.47589 * 183.03188 * 6 3 2 34 34 H 1.09006 * 109.47051 * 63.02441 * 6 3 2 35 35 H 0.97000 * 120.00098 * 4.22666 * 9 7 6 36 36 H 1.07998 * 119.98415 * 359.96910 * 11 10 9 37 37 H 1.08001 * 119.69193 * 179.75597 * 12 11 10 38 38 H 1.07996 * 119.71239 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.02690 * 180.02562 * 14 13 12 40 40 H 0.97005 * 119.99914 * 354.56147 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1848 -0.0006 7 6 3.9755 0.3728 1.1903 8 8 3.1483 -0.1472 1.9088 9 7 5.2883 0.2246 1.4568 10 6 5.6973 -0.5961 2.5031 11 6 4.9348 -0.6901 3.6572 12 6 5.3488 -1.5031 4.6956 13 6 6.5241 -2.2359 4.5948 14 6 7.2909 -2.1666 3.4680 15 6 6.8919 -1.3464 2.3962 16 6 7.6790 -1.2686 1.2281 17 1 7.2233 -0.9993 0.2867 18 6 9.0506 -1.5404 1.2892 19 7 9.6996 -1.3816 2.4143 20 14 9.9548 -2.1299 -0.2354 21 1 11.3876 -2.3444 0.0908 22 1 9.3567 -3.4060 -0.7032 23 1 9.8390 -1.1072 -1.3059 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 2.0017 3.0607 1.2490 28 1 0.4721 2.1507 1.2493 29 1 1.8804 1.5237 2.1392 30 1 1.7993 1.4797 -2.1369 31 1 0.4823 2.2307 -1.2043 32 1 2.0727 3.0248 -1.2965 33 1 3.9787 2.1791 0.0537 34 1 3.8605 0.6915 -0.9168 35 1 5.9480 0.6902 0.9192 36 1 4.0193 -0.1244 3.7467 37 1 4.7526 -1.5692 5.5937 38 1 6.8336 -2.8667 5.4148 39 1 8.2030 -2.7406 3.3989 40 1 9.2491 -1.0010 3.1845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344339964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:16 Heat of formation + Delta-G solvation = -88.882214 kcal Electronic energy + Delta-G solvation = -21899.991406 eV Core-core repulsion = 18678.518842 eV Total energy + Delta-G solvation = -3221.472564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.38741 -39.89049 -38.70967 -35.77190 -35.39017 -34.31865 -31.23251 -30.86759 -29.04769 -28.26395 -27.42048 -26.80177 -23.52807 -22.78927 -21.27955 -20.65578 -19.82224 -18.41061 -17.73961 -17.23491 -16.64668 -16.33218 -16.24865 -15.89882 -15.71086 -15.24277 -14.94402 -14.50051 -14.23826 -14.13877 -13.83856 -13.71965 -13.24563 -13.22146 -12.90883 -12.74931 -12.63798 -12.48640 -12.41242 -12.16655 -12.09081 -11.94787 -11.47619 -11.43838 -10.99216 -10.74448 -10.53363 -10.24462 -9.52648 -9.27527 -8.76290 -6.38731 0.81460 0.93556 1.54111 1.66584 1.82381 1.89607 2.34927 2.49067 2.71814 2.92961 3.57036 3.70083 3.87057 4.06200 4.25222 4.40739 4.43288 4.47049 4.55111 4.56903 4.63536 4.69961 4.71158 4.73261 4.90164 4.91531 4.98685 5.09169 5.11994 5.22843 5.33824 5.46093 5.52136 5.71627 5.80214 5.96870 6.07122 6.15926 6.38204 6.45294 6.70117 6.94164 6.94874 7.51519 8.07326 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.005152 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.839010 B = 5433.371968 C = 6424.091532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.121 3.879 4 C -0.181 4.181 5 C -0.169 4.169 6 C -0.122 4.122 7 C 0.494 3.506 8 O -0.552 6.552 9 N -0.646 5.646 10 C 0.009 3.991 11 C -0.090 4.090 12 C -0.242 4.242 13 C -0.099 4.099 14 C -0.228 4.228 15 C 0.061 3.939 16 C -0.544 4.544 17 H 0.080 0.920 18 C 0.007 3.993 19 N -0.816 5.816 20 Si 1.115 2.885 21 H -0.275 1.275 22 H -0.271 1.271 23 H -0.251 1.251 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.110 0.890 35 H 0.409 0.591 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.684 8.349 -8.650 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.082 3.918 4 C -0.238 4.238 5 C -0.227 4.227 6 C -0.162 4.162 7 C 0.284 3.716 8 O -0.430 6.430 9 N -0.290 5.290 10 C -0.085 4.085 11 C -0.110 4.110 12 C -0.262 4.262 13 C -0.118 4.118 14 C -0.248 4.248 15 C 0.057 3.943 16 C -0.572 4.572 17 H 0.098 0.902 18 C -0.210 4.210 19 N -0.439 5.439 20 Si 0.932 3.068 21 H -0.200 1.200 22 H -0.197 1.197 23 H -0.175 1.175 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.152 0.848 34 H 0.129 0.871 35 H 0.246 0.754 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.112 0.888 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.689 7.356 -8.680 14.945 hybrid contribution -1.301 0.555 0.962 1.710 sum -10.990 7.911 -7.718 15.586 Atomic orbital electron populations 1.22824 0.80938 1.02720 1.00569 1.88070 1.20429 1.28054 1.95064 1.21312 0.91165 0.83599 0.95725 1.22492 1.02129 1.00744 0.98413 1.22367 1.02731 1.01312 0.96246 1.21865 0.95693 1.02329 0.96306 1.21351 0.81477 0.81645 0.87170 1.90618 1.52376 1.49104 1.50880 1.43000 1.07792 1.45917 1.32251 1.17816 1.00279 1.00509 0.89940 1.20856 0.98565 0.99437 0.92178 1.20591 0.99720 1.05869 0.99994 1.20631 0.94866 0.99042 0.97257 1.20772 1.02675 1.04648 0.96745 1.17849 0.92781 0.89840 0.93873 1.20502 0.95669 1.45367 0.95646 0.90208 1.28331 0.96317 0.91608 1.04712 1.70575 1.40842 1.28655 1.03829 0.83021 0.74990 0.77901 0.70856 1.19979 1.19663 1.17482 0.92061 0.90228 0.94067 0.90244 0.91429 0.93404 0.91483 0.91025 0.89298 0.84753 0.87143 0.75444 0.87201 0.86741 0.86810 0.88821 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.21 113.37 1.16 1.75 16 2 O -0.40 -12.31 8.91 -129.23 -1.15 -13.46 16 3 C 0.12 2.97 0.71 -10.79 -0.01 2.96 16 4 C -0.18 -4.40 7.97 71.98 0.57 -3.82 16 5 C -0.17 -2.73 8.09 71.98 0.58 -2.15 16 6 C -0.12 -3.14 4.97 29.85 0.15 -2.99 16 7 C 0.49 18.72 7.17 87.66 0.63 19.35 16 8 O -0.55 -24.84 10.60 16.70 0.18 -24.66 16 9 N -0.65 -26.57 4.90 -302.27 -1.48 -28.06 16 10 C 0.01 0.46 6.34 38.88 0.25 0.71 16 11 C -0.09 -4.44 8.69 22.36 0.19 -4.25 16 12 C -0.24 -11.44 10.04 22.42 0.22 -11.21 16 13 C -0.10 -4.77 9.97 22.01 0.22 -4.55 16 14 C -0.23 -12.06 7.88 22.47 0.18 -11.89 16 15 C 0.06 3.23 5.32 -21.18 -0.11 3.12 16 16 C -0.54 -27.75 8.35 23.38 0.20 -27.56 16 17 H 0.08 3.85 7.39 -2.91 -0.02 3.83 16 18 C 0.01 0.35 4.95 85.26 0.42 0.77 16 19 N -0.82 -42.90 12.32 21.83 0.27 -42.64 16 20 Si 1.11 41.51 30.00 68.60 2.06 43.57 16 21 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 23 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 24 H 0.06 1.07 6.53 -2.39 -0.02 1.05 16 25 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.04 0.92 6.42 -2.39 -0.02 0.91 16 27 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.07 1.43 6.54 -2.39 -0.02 1.41 16 29 H 0.05 1.55 5.98 -2.39 -0.01 1.54 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.01 6.83 -2.39 -0.02 0.99 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.11 2.59 8.14 -2.38 -0.02 2.57 16 35 H 0.41 14.94 7.95 -92.71 -0.74 14.20 16 36 H 0.11 5.37 6.20 -2.91 -0.02 5.35 16 37 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 39 H 0.09 5.11 6.45 -2.91 -0.02 5.09 16 40 H 0.28 15.67 6.63 -92.70 -0.61 15.06 16 Total: -1.00 -66.92 320.56 4.99 -61.93 By element: Atomic # 1 Polarization: 42.61 SS G_CDS: 0.47 Total: 43.08 kcal Atomic # 6 Polarization: -44.41 SS G_CDS: 4.65 Total: -39.77 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -1.21 Total: -70.69 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.97 Total: -38.12 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.06 Total: 43.57 kcal Total: -66.92 4.99 -61.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344339964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.947 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds