Wall clock time and date at job start Mon Mar 30 2020 02:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47169 * 2 1 4 4 C 1.53001 * 109.46858 * 239.99860 * 2 1 3 5 5 O 1.42901 * 109.46588 * 120.00165 * 2 1 3 6 6 C 1.42896 * 114.00388 * 59.99664 * 5 2 1 7 7 C 1.50693 * 109.47069 * 179.97438 * 6 5 2 8 8 O 1.21281 * 120.00369 * 0.02562 * 7 6 5 9 9 N 1.34786 * 120.00039 * 179.97438 * 7 6 5 10 10 C 1.39120 * 119.99860 * 184.37270 * 9 7 6 11 11 C 1.38647 * 120.28887 * 325.34680 * 10 9 7 12 12 C 1.38223 * 120.03661 * 180.26219 * 11 10 9 13 13 C 1.38864 * 120.61570 * 359.73851 * 12 11 10 14 14 C 1.36475 * 120.57506 * 0.02562 * 13 12 11 15 15 C 1.40732 * 119.94463 * 359.97438 * 14 13 12 16 16 C 1.41067 * 120.30097 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00158 * 154.83018 * 16 15 14 18 18 C 1.39960 * 120.00035 * 334.81866 * 16 15 14 19 19 N 1.30850 * 120.00172 * 334.82627 * 18 16 15 20 20 Si 1.86797 * 119.99964 * 154.81633 * 18 16 15 21 21 H 1.48493 * 109.47433 * 180.02562 * 20 18 16 22 22 H 1.48507 * 109.47399 * 300.00688 * 20 18 16 23 23 H 1.48501 * 109.46727 * 60.00450 * 20 18 16 24 24 H 1.09001 * 109.47120 * 300.00343 * 1 2 3 25 25 H 1.09003 * 109.46869 * 60.00002 * 1 2 3 26 26 H 1.08994 * 109.47507 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46890 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47224 * 299.99780 * 3 2 1 29 29 H 1.09001 * 109.47380 * 59.99815 * 3 2 1 30 30 H 1.09004 * 109.47078 * 300.00404 * 4 2 1 31 31 H 1.09003 * 109.47268 * 60.00382 * 4 2 1 32 32 H 1.08998 * 109.46571 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.46992 * 59.99681 * 6 5 2 34 34 H 1.08999 * 109.47382 * 300.00034 * 6 5 2 35 35 H 0.96996 * 119.99503 * 4.37567 * 9 7 6 36 36 H 1.08002 * 119.97971 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.69606 * 179.76870 * 12 11 10 38 38 H 1.07997 * 119.71651 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.02277 * 180.02562 * 14 13 12 40 40 H 0.97005 * 119.99936 * 354.62807 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.5845 -2.0355 1.2646 7 6 2.1418 -2.6446 2.5252 8 8 2.8318 -1.9781 3.2672 9 7 1.8726 -3.9300 2.8287 10 6 2.3102 -4.4661 4.0356 11 6 3.5183 -4.0620 4.5831 12 6 3.9506 -4.6021 5.7798 13 6 3.1826 -5.5466 6.4478 14 6 1.9873 -5.9587 5.9341 15 6 1.5241 -5.4246 4.7172 16 6 0.2900 -5.8456 4.1790 17 1 -0.2580 -5.1964 3.5122 18 6 -0.2243 -7.1048 4.5090 19 7 0.5840 -8.0656 4.8776 20 14 -2.0645 -7.4138 4.4235 21 1 -2.3500 -8.8162 4.8196 22 1 -2.7657 -6.4864 5.3475 23 1 -2.5410 -7.1841 3.0359 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7217 -1.2490 33 1 1.9490 -2.5916 0.4008 34 1 0.4957 -2.0777 1.2908 35 1 1.3738 -4.4811 2.2056 36 1 4.1240 -3.3284 4.0719 37 1 4.8942 -4.2861 6.1994 38 1 3.5342 -5.9587 7.3821 39 1 1.3971 -6.6935 6.4614 40 1 1.5441 -7.9300 4.8476 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344352906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:23 Heat of formation + Delta-G solvation = -74.823844 kcal Electronic energy + Delta-G solvation = -21439.200321 eV Core-core repulsion = 18218.337374 eV Total energy + Delta-G solvation = -3220.862947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.82706 -38.75199 -37.22385 -33.98948 -33.77637 -33.42491 -29.49468 -29.25811 -27.88389 -27.58622 -26.67047 -24.99795 -21.77910 -20.96642 -20.02396 -19.50483 -18.03519 -17.03192 -16.69932 -15.82421 -15.70352 -14.95011 -14.62232 -14.55588 -14.19932 -13.79336 -13.58667 -13.22673 -12.89698 -12.73139 -12.38914 -12.24459 -12.13276 -12.00789 -11.89704 -11.88961 -11.51496 -11.32112 -11.03364 -10.75530 -10.66434 -10.45996 -10.27504 -9.69801 -9.60644 -9.31715 -9.03671 -8.81978 -7.62154 -7.39872 -6.96885 -4.49027 2.56074 2.79468 3.10218 3.15385 3.22142 3.31157 3.37754 3.95232 4.26759 4.53432 4.67062 4.67613 4.85686 5.10597 5.27207 5.29454 5.33613 5.40056 5.47809 5.55483 5.56436 5.66583 5.69464 5.86197 6.09599 6.10463 6.21032 6.33637 6.48803 6.82089 6.95048 7.14173 7.15608 7.37990 7.53527 7.71824 7.76882 7.92150 8.01790 8.21793 8.34888 8.66794 8.77214 8.97025 9.98757 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.004786 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.520101 B = 5849.253733 C = 7111.440336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.103 3.897 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.349 6.349 6 C 0.042 3.958 7 C 0.498 3.502 8 O -0.521 6.521 9 N -0.636 5.636 10 C 0.007 3.993 11 C -0.073 4.073 12 C -0.240 4.240 13 C -0.092 4.092 14 C -0.208 4.208 15 C 0.092 3.908 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.041 3.959 19 N -0.795 5.795 20 Si 1.064 2.936 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.277 1.277 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.402 0.598 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 8.996 -11.253 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.064 3.936 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.268 6.268 6 C -0.038 4.038 7 C 0.284 3.716 8 O -0.397 6.397 9 N -0.280 5.280 10 C -0.086 4.086 11 C -0.093 4.093 12 C -0.260 4.260 13 C -0.111 4.111 14 C -0.228 4.228 15 C 0.087 3.913 16 C -0.555 4.555 17 H 0.092 0.908 18 C -0.181 4.181 19 N -0.418 5.418 20 Si 0.888 3.112 21 H -0.198 1.198 22 H -0.200 1.200 23 H -0.202 1.202 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.237 0.763 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.731 8.408 -10.317 13.586 hybrid contribution 0.729 0.723 -0.763 1.279 sum -2.002 9.130 -11.080 14.496 Atomic orbital electron populations 1.22460 0.95710 1.02722 1.02914 1.21570 0.93219 0.93423 0.85433 1.21729 1.02104 0.93117 1.02362 1.22458 1.02410 1.01059 0.97831 1.88110 1.73950 1.22137 1.42581 1.22213 0.99756 0.84951 0.96872 1.20200 0.82174 0.82058 0.87218 1.90666 1.37232 1.61112 1.50650 1.42695 1.55520 1.10287 1.19527 1.17579 0.95276 1.06598 0.89156 1.20720 0.94042 0.98388 0.96140 1.20267 1.01544 1.04933 0.99219 1.20405 0.95412 0.97065 0.98173 1.20750 0.98206 1.06635 0.97218 1.17481 0.91503 0.91800 0.90485 1.20317 1.04166 1.03042 1.27943 0.90809 1.26961 1.07727 0.92015 0.91433 1.70466 1.08351 1.33328 1.29631 0.83647 0.72530 0.77299 0.77765 1.19837 1.20034 1.20208 0.91496 0.91489 0.92038 0.91705 0.91217 0.91657 0.92084 0.91476 0.91562 0.90589 0.90315 0.76299 0.87116 0.88967 0.89152 0.87340 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 8.25 37.16 0.31 -1.45 16 2 C 0.10 1.16 1.14 -90.62 -0.10 1.06 16 3 C -0.14 -1.35 8.84 37.15 0.33 -1.02 16 4 C -0.18 -1.70 8.25 37.16 0.31 -1.39 16 5 O -0.35 -5.49 9.52 -55.14 -0.52 -6.02 16 6 C 0.04 0.62 5.62 36.00 0.20 0.83 16 7 C 0.50 9.96 7.75 -10.98 -0.09 9.88 16 8 O -0.52 -12.53 13.91 -14.35 -0.20 -12.73 16 9 N -0.64 -13.15 4.90 -9.48 -0.05 -13.20 16 10 C 0.01 0.18 6.33 -83.17 -0.53 -0.35 16 11 C -0.07 -1.79 8.69 -39.44 -0.34 -2.13 16 12 C -0.24 -5.65 10.04 -39.36 -0.39 -6.04 16 13 C -0.09 -2.17 9.97 -39.99 -0.40 -2.56 16 14 C -0.21 -5.29 7.87 -39.28 -0.31 -5.60 16 15 C 0.09 2.35 5.32 -106.65 -0.57 1.79 16 16 C -0.53 -13.09 8.35 -37.86 -0.32 -13.41 16 17 H 0.07 1.74 7.39 -52.49 -0.39 1.36 16 18 C 0.04 0.99 4.95 -17.33 -0.09 0.90 16 19 N -0.79 -20.23 12.32 55.55 0.68 -19.55 16 20 Si 1.06 20.58 30.00 -169.99 -5.10 15.48 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.58 6.54 -51.93 -0.34 0.24 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.93 6.42 -51.93 -0.33 0.60 16 34 H 0.08 1.02 6.42 -51.93 -0.33 0.69 16 35 H 0.40 7.29 7.95 -40.82 -0.32 6.96 16 36 H 0.11 2.72 6.20 -52.49 -0.33 2.40 16 37 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.11 2.81 6.45 -52.49 -0.34 2.47 16 40 H 0.30 7.88 6.62 -40.82 -0.27 7.61 16 LS Contribution 326.98 15.07 4.93 4.93 Total: -1.00 -30.30 326.98 -7.84 -38.14 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.59 Total: 12.45 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -1.99 Total: -19.51 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.64 Total: -32.74 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.72 Total: -18.74 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.10 Total: 15.48 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.30 -7.84 -38.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344352906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.684 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds