Wall clock time and date at job start Mon Mar 30 2020 02:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47169 * 2 1 4 4 C 1.53001 * 109.46858 * 239.99860 * 2 1 3 5 5 O 1.42901 * 109.46588 * 120.00165 * 2 1 3 6 6 C 1.42896 * 114.00388 * 59.99664 * 5 2 1 7 7 C 1.50693 * 109.47069 * 179.97438 * 6 5 2 8 8 O 1.21281 * 120.00369 * 0.02562 * 7 6 5 9 9 N 1.34786 * 120.00039 * 179.97438 * 7 6 5 10 10 C 1.39120 * 119.99860 * 184.37270 * 9 7 6 11 11 C 1.38647 * 120.28887 * 325.34680 * 10 9 7 12 12 C 1.38223 * 120.03661 * 180.26219 * 11 10 9 13 13 C 1.38864 * 120.61570 * 359.73851 * 12 11 10 14 14 C 1.36475 * 120.57506 * 0.02562 * 13 12 11 15 15 C 1.40732 * 119.94463 * 359.97438 * 14 13 12 16 16 C 1.41067 * 120.30097 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00158 * 154.83018 * 16 15 14 18 18 C 1.39960 * 120.00035 * 334.81866 * 16 15 14 19 19 N 1.30850 * 120.00172 * 334.82627 * 18 16 15 20 20 Si 1.86797 * 119.99964 * 154.81633 * 18 16 15 21 21 H 1.48493 * 109.47433 * 180.02562 * 20 18 16 22 22 H 1.48507 * 109.47399 * 300.00688 * 20 18 16 23 23 H 1.48501 * 109.46727 * 60.00450 * 20 18 16 24 24 H 1.09001 * 109.47120 * 300.00343 * 1 2 3 25 25 H 1.09003 * 109.46869 * 60.00002 * 1 2 3 26 26 H 1.08994 * 109.47507 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46890 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47224 * 299.99780 * 3 2 1 29 29 H 1.09001 * 109.47380 * 59.99815 * 3 2 1 30 30 H 1.09004 * 109.47078 * 300.00404 * 4 2 1 31 31 H 1.09003 * 109.47268 * 60.00382 * 4 2 1 32 32 H 1.08998 * 109.46571 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.46992 * 59.99681 * 6 5 2 34 34 H 1.08999 * 109.47382 * 300.00034 * 6 5 2 35 35 H 0.96996 * 119.99503 * 4.37567 * 9 7 6 36 36 H 1.08002 * 119.97971 * 359.97438 * 11 10 9 37 37 H 1.07995 * 119.69606 * 179.76870 * 12 11 10 38 38 H 1.07997 * 119.71651 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.02277 * 180.02562 * 14 13 12 40 40 H 0.97005 * 119.99936 * 354.62807 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.5845 -2.0355 1.2646 7 6 2.1418 -2.6446 2.5252 8 8 2.8318 -1.9781 3.2672 9 7 1.8726 -3.9300 2.8287 10 6 2.3102 -4.4661 4.0356 11 6 3.5183 -4.0620 4.5831 12 6 3.9506 -4.6021 5.7798 13 6 3.1826 -5.5466 6.4478 14 6 1.9873 -5.9587 5.9341 15 6 1.5241 -5.4246 4.7172 16 6 0.2900 -5.8456 4.1790 17 1 -0.2580 -5.1964 3.5122 18 6 -0.2243 -7.1048 4.5090 19 7 0.5840 -8.0656 4.8776 20 14 -2.0645 -7.4138 4.4235 21 1 -2.3500 -8.8162 4.8196 22 1 -2.7657 -6.4864 5.3475 23 1 -2.5410 -7.1841 3.0359 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7217 -1.2490 33 1 1.9490 -2.5916 0.4008 34 1 0.4957 -2.0777 1.2908 35 1 1.3738 -4.4811 2.2056 36 1 4.1240 -3.3284 4.0719 37 1 4.8942 -4.2861 6.1994 38 1 3.5342 -5.9587 7.3821 39 1 1.3971 -6.6935 6.4614 40 1 1.5441 -7.9300 4.8476 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344352906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:22 Heat of formation + Delta-G solvation = -91.934084 kcal Electronic energy + Delta-G solvation = -21439.942276 eV Core-core repulsion = 18218.337374 eV Total energy + Delta-G solvation = -3221.604903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.37372 -39.99232 -38.93889 -35.81226 -35.54908 -34.41088 -31.28917 -30.99276 -29.03507 -28.30076 -27.82779 -26.83467 -23.52727 -22.78179 -21.23954 -20.92352 -19.86817 -18.53237 -18.05908 -17.08842 -17.06729 -16.63760 -16.14947 -15.90748 -15.62380 -15.22122 -14.78607 -14.45840 -14.37625 -14.19156 -14.07144 -13.85206 -13.30170 -13.11788 -12.87070 -12.76409 -12.69215 -12.66516 -12.45617 -12.23126 -12.16142 -11.94870 -11.56388 -11.48677 -11.08591 -10.82246 -10.60137 -10.55720 -9.56222 -9.30420 -8.83709 -6.42058 0.73776 0.90718 1.54674 1.65123 1.67422 1.82644 1.94683 2.34687 2.70037 3.05509 3.52868 3.72058 3.89128 3.95924 4.07583 4.11309 4.22698 4.39263 4.39507 4.65604 4.65763 4.67687 4.80636 4.80808 4.92778 4.93517 4.94791 5.06366 5.15151 5.28012 5.33664 5.36222 5.47958 5.65920 5.77833 5.90092 6.01069 6.10999 6.21680 6.33477 6.62350 6.83871 6.90998 7.32065 8.05682 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.004786 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.520101 B = 5849.253733 C = 7111.440336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.092 3.908 3 C -0.137 4.137 4 C -0.178 4.178 5 O -0.385 6.385 6 C 0.054 3.946 7 C 0.493 3.507 8 O -0.566 6.566 9 N -0.633 5.633 10 C 0.000 4.000 11 C -0.090 4.090 12 C -0.242 4.242 13 C -0.095 4.095 14 C -0.227 4.227 15 C 0.066 3.934 16 C -0.543 4.543 17 H 0.083 0.917 18 C 0.008 3.992 19 N -0.814 5.814 20 Si 1.115 2.885 21 H -0.276 1.276 22 H -0.271 1.271 23 H -0.250 1.250 24 H 0.054 0.946 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.414 0.586 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 9.534 -13.108 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.053 3.947 3 C -0.194 4.194 4 C -0.235 4.235 5 O -0.304 6.304 6 C -0.025 4.025 7 C 0.282 3.718 8 O -0.445 6.445 9 N -0.278 5.278 10 C -0.094 4.094 11 C -0.110 4.110 12 C -0.262 4.262 13 C -0.114 4.114 14 C -0.247 4.247 15 C 0.062 3.938 16 C -0.570 4.570 17 H 0.101 0.899 18 C -0.209 4.209 19 N -0.436 5.436 20 Si 0.932 3.068 21 H -0.201 1.201 22 H -0.196 1.196 23 H -0.174 1.174 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.251 0.749 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.115 0.885 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.192 8.955 -12.210 15.712 hybrid contribution 1.275 0.646 -0.192 1.442 sum -2.917 9.601 -12.402 15.953 Atomic orbital electron populations 1.22453 0.94395 1.03180 1.03567 1.21922 0.94362 0.93661 0.84707 1.21791 1.01570 0.92746 1.03259 1.22444 1.01854 1.01437 0.97750 1.88073 1.74888 1.22392 1.45082 1.22145 1.00631 0.85133 0.94596 1.21176 0.80976 0.81307 0.88351 1.90634 1.39283 1.62016 1.52601 1.42701 1.55476 1.10986 1.18607 1.17771 0.95103 1.06172 0.90360 1.20877 0.94436 0.98770 0.96936 1.20588 1.02363 1.04391 0.98846 1.20665 0.94785 0.96816 0.99101 1.20800 0.99139 1.07140 0.97655 1.17806 0.92354 0.92620 0.91057 1.20540 1.04235 1.03638 1.28629 0.89915 1.28343 1.11185 0.91469 0.89907 1.70575 1.07658 1.34069 1.31338 0.83018 0.67533 0.76993 0.79233 1.20053 1.19567 1.17403 0.92735 0.88984 0.91653 0.92639 0.88242 0.92816 0.91584 0.89035 0.92489 0.87553 0.87978 0.74909 0.87554 0.86603 0.86523 0.88517 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 8.25 71.98 0.59 -2.39 16 2 C 0.09 1.88 1.14 -10.79 -0.01 1.86 16 3 C -0.14 -2.49 8.84 71.98 0.64 -1.85 16 4 C -0.18 -2.83 8.25 71.98 0.59 -2.24 16 5 O -0.38 -11.70 9.52 -129.94 -1.24 -12.94 16 6 C 0.05 1.52 5.62 71.23 0.40 1.92 16 7 C 0.49 19.61 7.75 87.65 0.68 20.29 16 8 O -0.57 -27.70 13.91 16.01 0.22 -27.48 16 9 N -0.63 -26.03 4.90 -302.28 -1.48 -27.51 16 10 C 0.00 0.01 6.33 38.88 0.25 0.26 16 11 C -0.09 -4.48 8.69 22.36 0.19 -4.28 16 12 C -0.24 -11.39 10.04 22.42 0.22 -11.16 16 13 C -0.10 -4.49 9.97 22.01 0.22 -4.27 16 14 C -0.23 -11.77 7.87 22.47 0.18 -11.59 16 15 C 0.07 3.43 5.32 -21.18 -0.11 3.32 16 16 C -0.54 -26.95 8.35 23.38 0.20 -26.76 16 17 H 0.08 3.84 7.39 -2.91 -0.02 3.82 16 18 C 0.01 0.39 4.95 85.26 0.42 0.82 16 19 N -0.81 -41.85 12.32 21.83 0.27 -41.58 16 20 Si 1.11 40.24 30.00 68.60 2.06 42.30 16 21 H -0.28 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 23 H -0.25 -7.95 7.11 99.48 0.71 -7.24 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.03 6.54 -2.39 -0.02 1.01 16 27 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 0.98 6.54 -2.39 -0.02 0.96 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 2.32 6.42 -2.38 -0.02 2.31 16 34 H 0.10 2.38 6.42 -2.39 -0.02 2.37 16 35 H 0.41 14.67 7.95 -92.71 -0.74 13.94 16 36 H 0.11 5.34 6.20 -2.91 -0.02 5.32 16 37 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 38 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.10 5.15 6.45 -2.91 -0.02 5.13 16 40 H 0.29 15.39 6.62 -92.70 -0.61 14.78 16 Total: -1.00 -66.89 326.98 4.76 -62.14 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: 0.47 Total: 41.15 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 4.46 Total: -36.08 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -1.21 Total: -69.09 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -1.01 Total: -40.42 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.06 Total: 42.30 kcal Total: -66.89 4.76 -62.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344352906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.796 kcal (2) G-P(sol) polarization free energy of solvation -66.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds