Wall clock time and date at job start Mon Mar 30 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 O 1.42903 * 109.46726 * 174.99924 * 4 2 1 6 6 C 1.35913 * 116.99828 * 180.02562 * 5 4 2 7 7 C 1.38861 * 119.98166 * 359.72948 * 6 5 4 8 8 C 1.38243 * 120.23158 * 179.72106 * 7 6 5 9 9 C 1.38008 * 120.21447 * 0.55332 * 8 7 6 10 10 C 1.39574 * 119.95831 * 359.72018 * 9 8 7 11 11 C 1.47857 * 120.11320 * 180.02562 * 10 9 8 12 12 O 1.21547 * 119.99425 * 179.97438 * 11 10 9 13 13 N 1.34774 * 120.00124 * 359.97438 * 11 10 9 14 14 C 1.46503 * 119.99884 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47303 * 180.02562 * 14 13 11 16 16 H 1.08006 * 119.99513 * 0.02562 * 15 14 13 17 17 C 1.37866 * 120.00288 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00246 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00291 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47028 * 60.00188 * 19 17 15 21 21 H 1.48495 * 109.47227 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47189 * 300.00318 * 19 17 15 23 23 C 1.38453 * 119.98882 * 180.02562 * 6 5 4 24 24 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 25 25 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 26 26 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 28 28 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 29 29 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 31 31 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 32 32 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 33 33 H 1.07996 * 119.87974 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.89531 * 180.25450 * 8 7 6 35 35 H 1.07990 * 120.02409 * 179.74775 * 9 8 7 36 36 H 0.97003 * 119.99946 * 0.02562 * 13 11 10 37 37 H 1.08999 * 109.47234 * 300.00614 * 14 13 11 38 38 H 1.09002 * 109.46636 * 60.00876 * 14 13 11 39 39 H 0.96994 * 120.00523 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.09627 * 359.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1921 6 6 4.0805 -1.4432 2.2331 7 6 3.3282 -1.9369 3.2907 8 6 3.9492 -2.5729 4.3494 9 6 5.3222 -2.7114 4.3677 10 6 6.0871 -2.2133 3.3118 11 6 7.5582 -2.3603 3.3276 12 8 8.2222 -1.9261 2.4068 13 7 8.1629 -2.9756 4.3631 14 6 9.6206 -3.1217 4.3784 15 6 10.0403 -3.8396 5.6352 16 1 9.2956 -4.1557 6.3508 17 6 11.3747 -4.0927 5.8716 18 7 12.2816 -3.7072 5.0006 19 14 11.8951 -4.9819 7.4299 20 1 11.2630 -6.3251 7.4678 21 1 13.3727 -5.1290 7.4459 22 1 11.4632 -4.1980 8.6149 23 6 5.4586 -1.5762 2.2415 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8898 28 1 1.6767 1.9564 0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.7515 -0.1582 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 2.2538 -1.8271 3.2841 34 1 3.3584 -2.9585 5.1672 35 1 5.8044 -3.2052 5.1982 36 1 7.6329 -3.3224 5.0978 37 1 9.9372 -3.6972 3.5086 38 1 10.0848 -2.1358 4.3505 39 1 13.2204 -3.8849 5.1670 40 1 6.0451 -1.1888 1.4216 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350938194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:04 Heat of formation + Delta-G solvation = -91.461524 kcal Electronic energy + Delta-G solvation = -20360.684374 eV Core-core repulsion = 17139.099963 eV Total energy + Delta-G solvation = -3221.584411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47276 -40.43418 -38.37738 -36.28207 -36.12054 -34.43322 -32.27765 -31.21357 -29.18876 -28.05162 -27.55611 -25.54359 -23.84157 -23.38391 -21.62138 -20.99889 -19.93001 -18.39851 -17.57211 -17.31909 -17.12751 -16.90778 -16.48102 -16.21341 -16.13137 -15.30937 -14.89895 -14.81620 -14.63184 -14.21387 -14.09192 -13.96447 -13.64446 -13.28638 -13.00001 -12.95489 -12.80909 -12.67782 -12.29682 -12.23666 -12.15519 -12.02296 -11.58542 -11.53373 -11.50904 -10.99277 -10.80965 -10.17408 -9.85100 -9.27766 -8.29451 -6.46990 -0.21597 0.38298 1.43665 1.48418 1.56524 1.85689 2.02737 2.34346 2.56888 2.83280 3.05396 3.69470 3.75463 3.85730 3.91452 4.06918 4.11611 4.18849 4.27238 4.45586 4.51594 4.57257 4.68105 4.79961 4.87541 4.98583 5.02312 5.06244 5.19077 5.19476 5.22308 5.31491 5.34573 5.38371 5.40439 5.42146 5.59871 5.70496 5.81193 6.42042 6.61630 6.79699 7.19781 7.36049 8.82745 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046122 B = 0.002781 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.946196 B =10065.736209 C =10566.719212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 C -0.149 4.149 4 C 0.053 3.947 5 O -0.330 6.330 6 C 0.119 3.881 7 C -0.176 4.176 8 C -0.073 4.073 9 C -0.124 4.124 10 C -0.105 4.105 11 C 0.535 3.465 12 O -0.600 6.600 13 N -0.695 5.695 14 C 0.265 3.735 15 C -0.557 4.557 16 H 0.087 0.913 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.988 3.012 20 H -0.260 1.260 21 H -0.286 1.286 22 H -0.261 1.261 23 C -0.122 4.122 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.146 0.854 36 H 0.409 0.591 37 H -0.010 1.010 38 H -0.010 1.010 39 H 0.269 0.731 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.467 4.295 -2.315 28.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.021 4.021 5 O -0.245 6.245 6 C 0.073 3.927 7 C -0.194 4.194 8 C -0.091 4.091 9 C -0.143 4.143 10 C -0.108 4.108 11 C 0.324 3.676 12 O -0.483 6.483 13 N -0.345 5.345 14 C 0.142 3.858 15 C -0.595 4.595 16 H 0.105 0.895 17 C -0.197 4.197 18 N -0.569 5.569 19 Si 0.811 3.189 20 H -0.185 1.185 21 H -0.211 1.211 22 H -0.185 1.185 23 C -0.142 4.142 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.184 0.816 34 H 0.192 0.808 35 H 0.164 0.836 36 H 0.247 0.753 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.078 0.922 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -27.707 4.679 -3.150 28.276 hybrid contribution 0.961 -0.345 0.470 1.124 sum -26.747 4.334 -2.680 27.228 Atomic orbital electron populations 1.21753 0.91815 1.02961 1.03227 1.21168 0.97245 0.96358 0.96678 1.21833 1.00640 0.95605 1.02516 1.23255 0.76786 1.01691 1.00361 1.86077 1.23716 1.73368 1.41294 1.18793 0.91001 0.94275 0.88583 1.21797 1.01722 1.01830 0.94065 1.21328 0.93213 0.96064 0.98471 1.21529 0.95191 1.00131 0.97441 1.19628 0.91110 1.02657 0.97380 1.18972 0.88651 0.77926 0.82081 1.90693 1.67706 1.51772 1.38133 1.46107 1.09335 1.56784 1.22250 1.18640 0.75676 0.94786 0.96689 1.21561 0.93729 1.38841 1.05383 0.89523 1.26111 0.96234 0.96266 1.01083 1.70137 1.02019 1.46980 1.37807 0.85156 0.76882 0.79013 0.77856 1.18493 1.21146 1.18508 1.20356 0.92764 1.01955 0.99138 0.91470 0.91177 0.91526 0.91005 0.92014 0.94080 0.91563 0.90450 0.90326 0.81570 0.80808 0.83649 0.75318 0.99200 0.99195 0.92184 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.19 71.98 0.66 -0.41 16 2 C -0.10 -1.23 3.16 -10.79 -0.03 -1.27 16 3 C -0.15 -2.13 9.09 71.98 0.65 -1.48 16 4 C 0.05 0.77 4.12 71.98 0.30 1.07 16 5 O -0.33 -7.89 9.67 -92.57 -0.89 -8.78 16 6 C 0.12 3.07 6.68 22.47 0.15 3.22 16 7 C -0.18 -3.22 9.03 22.42 0.20 -3.01 16 8 C -0.07 -1.31 10.03 22.22 0.22 -1.08 16 9 C -0.12 -3.12 9.54 22.54 0.21 -2.91 16 10 C -0.10 -3.63 5.87 -20.10 -0.12 -3.75 16 11 C 0.54 24.40 7.77 86.79 0.67 25.08 16 12 O -0.60 -33.02 16.35 -3.86 -0.06 -33.08 16 13 N -0.70 -31.52 5.50 -469.69 -2.58 -34.10 16 14 C 0.26 15.06 5.43 85.63 0.46 15.52 16 15 C -0.56 -30.72 9.28 25.60 0.24 -30.49 16 16 H 0.09 4.25 7.60 -2.91 -0.02 4.23 16 17 C 0.00 0.15 5.46 84.65 0.46 0.61 16 18 N -0.93 -56.88 13.29 21.44 0.28 -56.59 16 19 Si 0.99 42.39 29.54 68.60 2.03 44.42 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 C -0.12 -4.12 9.53 22.63 0.22 -3.90 16 24 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 26 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.04 0.78 7.82 -2.39 -0.02 0.76 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.08 0.88 7.65 -2.39 -0.02 0.86 16 32 H 0.08 0.87 7.67 -2.39 -0.02 0.85 16 33 H 0.17 1.76 6.28 -2.91 -0.02 1.75 16 34 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 35 H 0.15 3.15 6.40 -2.92 -0.02 3.13 16 36 H 0.41 15.11 6.35 -92.71 -0.59 14.52 16 37 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 40 H 0.11 4.36 7.65 -2.91 -0.02 4.34 16 Total: -1.00 -76.41 338.75 3.52 -72.89 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.45 Total: 18.06 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.31 Total: -2.81 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -2.30 Total: -90.69 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -0.96 Total: -41.87 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -76.41 3.52 -72.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350938194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.574 kcal (2) G-P(sol) polarization free energy of solvation -76.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds