Wall clock time and date at job start Mon Mar 30 2020 01:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00212 * 2 1 4 4 H 1.08999 * 109.47186 * 15.39585 * 3 2 1 5 5 C 1.50705 * 109.47183 * 135.39633 * 3 2 1 6 6 O 1.21277 * 119.99696 * 5.18076 * 5 3 2 7 7 N 1.34770 * 119.99853 * 185.17648 * 5 3 2 8 8 C 1.39243 * 119.99927 * 184.87420 * 7 5 3 9 9 C 1.39473 * 119.83285 * 324.38837 * 8 7 5 10 10 C 1.36375 * 120.16907 * 179.75458 * 9 8 7 11 11 C 1.40871 * 119.82524 * 0.52238 * 10 9 8 12 12 C 1.41149 * 120.16595 * 179.71399 * 11 10 9 13 13 H 1.07998 * 120.00298 * 208.92055 * 12 11 10 14 14 C 1.39909 * 119.99758 * 28.92118 * 12 11 10 15 15 N 1.30867 * 120.00354 * 10.97910 * 14 12 11 16 16 Si 1.86805 * 119.99801 * 190.98435 * 14 12 11 17 17 H 1.48506 * 109.47315 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47287 * 119.99753 * 16 14 12 19 19 H 1.48503 * 109.46651 * 239.99733 * 16 14 12 20 20 C 1.40872 * 119.67423 * 359.73852 * 11 10 9 21 21 C 1.36376 * 119.82787 * 359.97438 * 20 11 10 22 22 C 1.53002 * 109.46944 * 255.39926 * 3 2 1 23 23 C 1.53004 * 109.46954 * 305.15948 * 22 3 2 24 24 C 1.52994 * 109.47175 * 65.16103 * 22 3 2 25 25 H 1.09001 * 109.47060 * 184.49990 * 1 2 3 26 26 H 1.09002 * 109.47027 * 304.50357 * 1 2 3 27 27 H 1.09002 * 109.46697 * 64.49980 * 1 2 3 28 28 H 0.97008 * 119.99968 * 4.88170 * 7 5 3 29 29 H 1.07994 * 119.91514 * 0.02631 * 9 8 7 30 30 H 1.07997 * 120.09278 * 180.25769 * 10 9 8 31 31 H 0.96993 * 120.00105 * 179.97438 * 15 14 12 32 32 H 1.08005 * 120.08817 * 179.97438 * 20 11 10 33 33 H 1.07997 * 119.92066 * 179.97438 * 21 20 11 34 34 H 1.08998 * 109.46885 * 185.16696 * 22 3 2 35 35 H 1.09005 * 109.47050 * 64.19375 * 23 22 3 36 36 H 1.09004 * 109.46737 * 184.18547 * 23 22 3 37 37 H 1.09000 * 109.47297 * 304.19045 * 23 22 3 38 38 H 1.09000 * 109.47691 * 300.55008 * 24 22 3 39 39 H 1.09000 * 109.47316 * 60.55170 * 24 22 3 40 40 H 1.09005 * 109.46909 * 180.54434 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2530 2.0404 0.2728 5 6 3.1388 1.3529 0.9977 6 8 3.4793 0.3430 1.5765 7 7 3.7695 2.5176 1.2467 8 6 4.8766 2.5431 2.0909 9 6 4.9247 1.6961 3.1979 10 6 6.0079 1.7119 4.0263 11 6 7.0749 2.5945 3.7678 12 6 8.1968 2.6211 4.6240 13 1 8.7644 3.5323 4.7422 14 6 8.5734 1.4671 5.3195 15 7 8.0285 0.3155 5.0202 16 14 9.8541 1.5700 6.6755 17 1 10.3129 2.9753 6.8175 18 1 9.2574 1.1119 7.9559 19 1 11.0106 0.7047 6.3307 20 6 7.0166 3.4509 2.6508 21 6 5.9294 3.4195 1.8280 22 6 2.5499 1.6234 -1.3959 23 6 3.5175 0.5213 -1.8319 24 6 1.3867 1.7021 -2.3867 25 1 -0.3633 -1.0245 0.0806 26 1 -0.3633 0.5821 0.8469 27 1 -0.3633 0.4424 -0.9276 28 1 3.4522 3.3381 0.8379 29 1 4.1041 1.0229 3.3970 30 1 6.0457 1.0525 4.8808 31 1 8.2899 -0.4846 5.5021 32 1 7.8307 4.1306 2.4465 33 1 5.8830 4.0757 0.9715 34 1 3.0738 2.5790 -1.3740 35 1 2.9769 -0.4206 -1.9258 36 1 3.9585 0.7845 -2.7933 37 1 4.3063 0.4148 -1.0872 38 1 0.8569 0.7496 -2.4014 39 1 0.7024 2.4938 -2.0815 40 1 1.7721 1.9190 -3.3830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351013629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:15 Heat of formation + Delta-G solvation = -87.732833 kcal Electronic energy + Delta-G solvation = -21512.938020 eV Core-core repulsion = 18291.515298 eV Total energy + Delta-G solvation = -3221.422723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51335 -39.64434 -38.45934 -36.21931 -35.60491 -34.60321 -31.48605 -31.03606 -29.27500 -28.10259 -27.17599 -26.09634 -23.34757 -22.91172 -21.84248 -20.79900 -19.25586 -18.82707 -17.97336 -17.47048 -17.00071 -16.65627 -16.00401 -15.85014 -15.62914 -14.99145 -14.75615 -14.64610 -14.41796 -14.04310 -13.92315 -13.62914 -13.37185 -13.31487 -12.96812 -12.83674 -12.67896 -12.49561 -12.32316 -12.25190 -12.01368 -11.75240 -11.66169 -11.63451 -11.24625 -10.93515 -10.57308 -10.20469 -9.45801 -8.83897 -8.57471 -6.30021 0.80692 1.13127 1.37947 1.42914 1.54285 1.73567 2.08563 2.21966 2.78165 3.04826 3.65967 3.69469 3.76482 3.91229 4.16907 4.32078 4.44086 4.47773 4.49304 4.56232 4.69121 4.81674 4.84697 4.93703 4.98575 5.03287 5.10315 5.15444 5.17869 5.30766 5.37341 5.42782 5.44348 5.68790 5.84814 6.07301 6.10311 6.14529 6.34798 6.68961 6.74451 6.93492 7.00897 7.42337 8.38112 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034481 B = 0.003811 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.849947 B = 7346.006988 C = 7705.980223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.386 6.386 3 C 0.086 3.914 4 H 0.121 0.879 5 C 0.489 3.511 6 O -0.567 6.567 7 N -0.639 5.639 8 C 0.012 3.988 9 C -0.106 4.106 10 C -0.175 4.175 11 C 0.072 3.928 12 C -0.495 4.495 13 H 0.082 0.918 14 C 0.026 3.974 15 N -0.839 5.839 16 Si 0.988 3.012 17 H -0.252 1.252 18 H -0.268 1.268 19 H -0.268 1.268 20 C -0.218 4.218 21 C -0.099 4.099 22 C -0.101 4.101 23 C -0.141 4.141 24 C -0.142 4.142 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.419 0.581 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.284 0.716 32 H 0.113 0.887 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.017 0.983 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.536 5.533 -12.476 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.303 6.303 3 C 0.025 3.975 4 H 0.138 0.862 5 C 0.277 3.723 6 O -0.445 6.445 7 N -0.286 5.286 8 C -0.081 4.081 9 C -0.126 4.126 10 C -0.196 4.196 11 C 0.070 3.930 12 C -0.525 4.525 13 H 0.101 0.899 14 C -0.187 4.187 15 N -0.466 5.466 16 Si 0.809 3.191 17 H -0.175 1.175 18 H -0.193 1.193 19 H -0.193 1.193 20 C -0.238 4.238 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.199 4.199 24 C -0.199 4.199 25 H 0.110 0.890 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.257 0.743 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.131 0.869 33 H 0.156 0.844 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.225 4.381 -12.057 18.425 hybrid contribution 0.464 -0.130 0.820 0.951 sum -12.762 4.252 -11.237 17.527 Atomic orbital electron populations 1.23214 0.79018 1.03962 1.01599 1.88020 1.21636 1.25960 1.94733 1.22135 0.93769 0.87637 0.93951 0.86194 1.21604 0.84719 0.82841 0.83164 1.90706 1.66134 1.36036 1.51615 1.42803 1.28875 1.10262 1.46664 1.17285 0.91227 1.04958 0.94629 1.20603 0.98297 0.99025 0.94681 1.20932 0.93988 1.03574 1.01065 1.18027 0.92202 0.91077 0.91719 1.19857 1.11233 0.97830 1.23570 0.89942 1.26871 0.99079 0.93957 0.98800 1.69939 1.39497 1.00223 1.36969 0.85070 0.77200 0.79842 0.77005 1.17505 1.19263 1.19292 1.20899 0.99744 1.05832 0.97297 1.20438 0.92063 0.99707 0.99697 1.21562 0.98163 0.99881 0.92396 1.21701 0.98255 0.99262 1.00664 1.21865 0.96741 1.02660 0.98609 0.88992 0.93308 0.91019 0.74331 0.89017 0.88686 0.90525 0.86901 0.84386 0.88322 0.92681 0.90822 0.96401 0.92330 0.90452 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.43 113.37 1.18 1.49 16 2 O -0.39 -10.70 8.77 -129.99 -1.14 -11.84 16 3 C 0.09 2.11 2.35 29.85 0.07 2.18 16 4 H 0.12 2.00 7.60 -2.39 -0.02 1.98 16 5 C 0.49 17.68 5.93 87.66 0.52 18.20 16 6 O -0.57 -27.75 13.93 15.96 0.22 -27.53 16 7 N -0.64 -21.46 5.19 -303.12 -1.57 -23.03 16 8 C 0.01 0.55 6.30 38.56 0.24 0.79 16 9 C -0.11 -5.63 8.61 22.13 0.19 -5.44 16 10 C -0.18 -10.14 8.60 22.48 0.19 -9.94 16 11 C 0.07 4.05 5.55 -21.28 -0.12 3.93 16 12 C -0.49 -27.45 9.04 23.39 0.21 -27.24 16 13 H 0.08 4.30 7.87 -2.91 -0.02 4.28 16 14 C 0.03 1.36 5.24 85.24 0.45 1.81 16 15 N -0.84 -47.61 10.85 21.82 0.24 -47.37 16 16 Si 0.99 39.97 29.57 68.60 2.03 42.00 16 17 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 18 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 19 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 20 C -0.22 -10.53 9.74 22.48 0.22 -10.31 16 21 C -0.10 -4.16 9.90 22.14 0.22 -3.94 16 22 C -0.10 -1.95 2.73 -10.79 -0.03 -1.98 16 23 C -0.14 -3.58 8.80 71.98 0.63 -2.95 16 24 C -0.14 -1.76 8.50 71.98 0.61 -1.15 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 26 H 0.05 0.77 8.04 -2.39 -0.02 0.75 16 27 H 0.07 0.84 6.27 -2.39 -0.01 0.83 16 28 H 0.42 9.67 8.70 -92.70 -0.81 8.86 16 29 H 0.09 5.06 6.23 -2.91 -0.02 5.04 16 30 H 0.10 5.86 6.23 -2.91 -0.02 5.84 16 31 H 0.28 14.71 8.30 -92.71 -0.77 13.94 16 32 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 33 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.10 1.59 7.93 -2.39 -0.02 1.57 16 35 H 0.05 1.46 7.70 -2.38 -0.02 1.44 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.02 0.58 7.26 -2.39 -0.02 0.56 16 38 H 0.06 0.79 6.34 -2.39 -0.02 0.78 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 0.77 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -75.85 328.55 4.61 -71.24 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 0.24 Total: 31.09 kcal Atomic # 6 Polarization: -39.14 SS G_CDS: 4.59 Total: -34.55 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -1.34 Total: -70.40 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -0.92 Total: -39.38 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -75.85 4.61 -71.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351013629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.492 kcal (2) G-P(sol) polarization free energy of solvation -75.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds