Wall clock time and date at job start Mon Mar 30 2020 01:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00084 * 2 1 4 4 H 1.08991 * 109.46863 * 341.83395 * 3 2 1 5 5 C 1.50702 * 109.47097 * 221.83156 * 3 2 1 6 6 O 1.21277 * 119.99842 * 355.00004 * 5 3 2 7 7 N 1.34780 * 120.00000 * 175.00260 * 5 3 2 8 8 C 1.39235 * 119.99994 * 184.67129 * 7 5 3 9 9 C 1.39474 * 119.83136 * 213.45097 * 8 7 5 10 10 C 1.36383 * 120.16510 * 179.71700 * 9 8 7 11 11 C 1.40860 * 119.82704 * 0.57615 * 10 9 8 12 12 C 1.41159 * 120.16513 * 179.67538 * 11 10 9 13 13 H 1.07995 * 120.00410 * 205.74129 * 12 11 10 14 14 C 1.39911 * 119.99501 * 25.73273 * 12 11 10 15 15 N 1.30872 * 119.99866 * 17.60029 * 14 12 11 16 16 Si 1.86794 * 119.99879 * 197.59152 * 14 12 11 17 17 H 1.48504 * 109.46770 * 90.00260 * 16 14 12 18 18 H 1.48497 * 109.47613 * 210.00280 * 16 14 12 19 19 H 1.48499 * 109.47481 * 330.00910 * 16 14 12 20 20 C 1.40865 * 119.67801 * 359.69841 * 11 10 9 21 21 C 1.36376 * 119.82515 * 0.02562 * 20 11 10 22 22 C 1.53002 * 109.46872 * 101.83250 * 3 2 1 23 23 C 1.53000 * 109.47385 * 55.56231 * 22 3 2 24 24 C 1.52994 * 109.47256 * 295.55639 * 22 3 2 25 25 H 1.08997 * 109.47231 * 295.56237 * 1 2 3 26 26 H 1.09003 * 109.46429 * 55.56099 * 1 2 3 27 27 H 1.09005 * 109.47214 * 175.55691 * 1 2 3 28 28 H 0.96996 * 119.99520 * 4.66766 * 7 5 3 29 29 H 1.08002 * 119.91639 * 0.02562 * 9 8 7 30 30 H 1.08003 * 120.08180 * 180.25335 * 10 9 8 31 31 H 0.97001 * 119.99506 * 179.97438 * 15 14 12 32 32 H 1.08001 * 120.09132 * 179.97438 * 20 11 10 33 33 H 1.07997 * 119.91831 * 180.02562 * 21 20 11 34 34 H 1.09005 * 109.46791 * 175.55969 * 22 3 2 35 35 H 1.09005 * 109.46942 * 299.99645 * 23 22 3 36 36 H 1.09004 * 109.47271 * 59.99743 * 23 22 3 37 37 H 1.09000 * 109.46909 * 179.97438 * 23 22 3 38 38 H 1.09000 * 109.47268 * 179.69841 * 24 22 3 39 39 H 1.09004 * 109.47587 * 299.70029 * 24 22 3 40 40 H 1.09007 * 109.47003 * 59.70138 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2661 2.0344 -0.3204 5 6 3.1817 1.3337 -0.9476 6 8 3.5450 0.3134 -1.4933 7 7 3.8257 2.4929 -1.1886 8 6 4.8446 2.5393 -2.1364 9 6 5.9291 3.3958 -1.9480 10 6 6.9337 3.4425 -2.8691 11 6 6.8680 2.6316 -4.0191 12 6 7.9005 2.6793 -4.9805 13 1 7.6949 2.4155 -6.0074 14 6 9.1903 3.0683 -4.6030 15 7 9.5346 3.0551 -3.3405 16 14 10.4210 3.6065 -5.9011 17 1 10.3090 5.0722 -6.1119 18 1 11.7957 3.2752 -5.4477 19 1 10.1366 2.9000 -7.1760 20 6 5.7667 1.7733 -4.2053 21 6 4.7725 1.7334 -3.2727 22 6 2.4879 1.6510 1.4119 23 6 3.4489 0.5673 1.9047 24 6 1.2838 1.7309 2.3523 25 1 -0.3633 0.4434 0.9270 26 1 -0.3632 0.5812 -0.8476 27 1 -0.3634 -1.0246 -0.0796 28 1 3.5793 3.2948 -0.7018 29 1 5.9758 4.0201 -1.0679 30 1 7.7749 4.1033 -2.7198 31 1 10.4290 3.3245 -3.0788 32 1 5.7094 1.1490 -5.0847 33 1 3.9277 1.0756 -3.4137 34 1 3.0014 2.6124 1.3966 35 1 2.9354 -0.3941 1.9201 36 1 4.3068 0.5103 1.2347 37 1 3.7895 0.8137 2.9104 38 1 1.6246 1.9718 3.3593 39 1 0.6017 2.5067 2.0043 40 1 0.7671 0.7712 2.3635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351013630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:19 Heat of formation + Delta-G solvation = -68.706941 kcal Electronic energy + Delta-G solvation = -21438.069418 eV Core-core repulsion = 18217.471719 eV Total energy + Delta-G solvation = -3220.597698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11069 -38.22451 -36.87968 -34.77193 -34.29647 -32.88329 -29.62280 -29.29191 -28.17208 -27.15377 -26.00369 -24.52829 -21.82734 -20.95868 -20.58423 -19.42837 -17.46229 -17.26090 -16.72891 -16.26892 -15.54808 -15.13577 -14.67684 -14.47730 -14.00687 -13.86183 -13.59180 -13.26189 -12.79519 -12.71725 -12.37938 -12.22040 -12.07560 -11.84315 -11.67107 -11.41894 -11.29400 -11.13344 -11.09621 -10.97007 -10.78404 -10.72047 -10.03221 -9.77447 -9.56687 -9.28576 -9.00950 -8.79567 -7.53485 -6.97137 -6.73487 -4.28926 2.56924 3.01015 3.07705 3.10749 3.11766 3.21826 3.44448 3.93821 4.11810 4.59901 4.62336 4.75022 4.88967 5.05936 5.14243 5.22663 5.34397 5.48049 5.54118 5.59972 5.70740 5.72852 5.85418 5.96813 6.16330 6.20202 6.40177 6.43954 6.78266 6.88539 7.04840 7.05816 7.19850 7.30247 7.60125 7.73542 7.91322 8.04332 8.28912 8.30700 8.60240 8.79730 8.89165 9.01337 10.18732 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039729 B = 0.003630 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.614020 B = 7712.502521 C = 8066.078836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.351 6.351 3 C 0.078 3.922 4 H 0.083 0.917 5 C 0.495 3.505 6 O -0.510 6.510 7 N -0.650 5.650 8 C -0.005 4.005 9 C -0.113 4.113 10 C -0.153 4.153 11 C 0.106 3.894 12 C -0.459 4.459 13 H 0.079 0.921 14 C 0.075 3.925 15 N -0.792 5.792 16 Si 0.909 3.091 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.215 4.215 21 C -0.077 4.077 22 C -0.108 4.108 23 C -0.143 4.143 24 C -0.149 4.149 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.393 0.607 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.281 0.719 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.248 1.570 9.401 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.269 6.269 3 C 0.016 3.984 4 H 0.101 0.899 5 C 0.280 3.720 6 O -0.384 6.384 7 N -0.294 5.294 8 C -0.097 4.097 9 C -0.133 4.133 10 C -0.173 4.173 11 C 0.103 3.897 12 C -0.489 4.489 13 H 0.097 0.903 14 C -0.143 4.143 15 N -0.418 5.418 16 Si 0.734 3.266 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.186 1.186 20 C -0.235 4.235 21 C -0.097 4.097 22 C -0.127 4.127 23 C -0.201 4.201 24 C -0.206 4.206 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.226 0.774 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.702 0.659 9.163 15.675 hybrid contribution 0.327 0.860 -0.186 0.938 sum -12.375 1.518 8.976 15.363 Atomic orbital electron populations 1.22998 0.81316 1.03001 0.99961 1.88042 1.19039 1.25127 1.94643 1.22064 0.94816 0.86789 0.94743 0.89930 1.20403 0.84630 0.83969 0.82976 1.90712 1.65173 1.32626 1.49925 1.42946 1.35866 1.10408 1.40228 1.17135 0.92113 1.08358 0.92127 1.20206 0.93654 1.00404 0.99038 1.20857 0.98112 1.01907 0.96396 1.17655 0.91413 0.88425 0.92158 1.19570 0.93045 1.39677 0.96572 0.90333 1.25922 0.99474 0.92918 0.95976 1.69853 1.20431 1.34136 1.17341 0.86298 0.78946 0.79868 0.81529 1.19289 1.20343 1.18603 1.20657 0.98276 1.03721 1.00815 1.20259 0.98622 0.98279 0.92514 1.21535 0.97494 1.00221 0.93411 1.21726 0.99047 0.98744 1.00555 1.21926 0.97427 1.01946 0.99309 0.93684 0.94009 0.89470 0.77365 0.89177 0.86247 0.90864 0.88687 0.88078 0.90034 0.91640 0.92213 0.92798 0.92126 0.92783 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.42 101.05 1.05 1.29 16 2 O -0.35 -5.04 8.75 -55.09 -0.48 -5.52 16 3 C 0.08 1.04 2.37 -27.88 -0.07 0.97 16 4 H 0.08 0.88 7.61 -51.93 -0.40 0.49 16 5 C 0.50 9.04 5.86 -10.98 -0.06 8.98 16 6 O -0.51 -11.84 14.16 -14.30 -0.20 -12.04 16 7 N -0.65 -11.59 5.24 -9.74 -0.05 -11.64 16 8 C -0.01 -0.12 6.29 -83.57 -0.53 -0.64 16 9 C -0.11 -2.59 9.89 -39.79 -0.39 -2.98 16 10 C -0.15 -3.94 8.63 -39.26 -0.34 -4.28 16 11 C 0.11 2.87 5.56 -106.80 -0.59 2.28 16 12 C -0.46 -12.29 9.03 -37.85 -0.34 -12.63 16 13 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 14 C 0.07 1.89 5.13 -17.33 -0.09 1.80 16 15 N -0.79 -20.55 11.02 55.55 0.61 -19.94 16 16 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 17 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 18 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 C -0.21 -5.55 9.74 -39.26 -0.38 -5.93 16 21 C -0.08 -1.89 8.58 -39.79 -0.34 -2.23 16 22 C -0.11 -1.20 2.73 -90.62 -0.25 -1.44 16 23 C -0.14 -1.86 8.81 37.16 0.33 -1.53 16 24 C -0.15 -1.25 8.39 37.15 0.31 -0.94 16 25 H 0.04 0.35 5.97 -51.93 -0.31 0.04 16 26 H 0.04 0.38 8.03 -51.93 -0.42 -0.04 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.39 5.42 8.37 -40.82 -0.34 5.07 16 29 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.12 3.14 6.24 -52.48 -0.33 2.81 16 31 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 32 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 33 H 0.10 2.47 6.40 -52.49 -0.34 2.13 16 34 H 0.08 0.82 7.66 -51.93 -0.40 0.43 16 35 H 0.06 0.88 7.57 -51.93 -0.39 0.49 16 36 H 0.06 0.95 7.36 -51.93 -0.38 0.57 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.54 6.16 -51.93 -0.32 0.22 16 LS Contribution 327.77 15.07 4.94 4.94 Total: -1.00 -31.53 327.77 -7.61 -39.14 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.71 Total: 8.72 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -1.69 Total: -17.30 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.56 Total: -31.58 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.68 Total: -17.57 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.53 -7.61 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351013630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.564 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds