Wall clock time and date at job start Mon Mar 30 2020 01:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00084 * 2 1 4 4 H 1.08991 * 109.46863 * 341.83395 * 3 2 1 5 5 C 1.50702 * 109.47097 * 221.83156 * 3 2 1 6 6 O 1.21277 * 119.99842 * 355.00004 * 5 3 2 7 7 N 1.34780 * 120.00000 * 175.00260 * 5 3 2 8 8 C 1.39235 * 119.99994 * 184.67129 * 7 5 3 9 9 C 1.39474 * 119.83136 * 213.45097 * 8 7 5 10 10 C 1.36383 * 120.16510 * 179.71700 * 9 8 7 11 11 C 1.40860 * 119.82704 * 0.57615 * 10 9 8 12 12 C 1.41159 * 120.16513 * 179.67538 * 11 10 9 13 13 H 1.07995 * 120.00410 * 205.74129 * 12 11 10 14 14 C 1.39911 * 119.99501 * 25.73273 * 12 11 10 15 15 N 1.30872 * 119.99866 * 17.60029 * 14 12 11 16 16 Si 1.86794 * 119.99879 * 197.59152 * 14 12 11 17 17 H 1.48504 * 109.46770 * 90.00260 * 16 14 12 18 18 H 1.48497 * 109.47613 * 210.00280 * 16 14 12 19 19 H 1.48499 * 109.47481 * 330.00910 * 16 14 12 20 20 C 1.40865 * 119.67801 * 359.69841 * 11 10 9 21 21 C 1.36376 * 119.82515 * 0.02562 * 20 11 10 22 22 C 1.53002 * 109.46872 * 101.83250 * 3 2 1 23 23 C 1.53000 * 109.47385 * 55.56231 * 22 3 2 24 24 C 1.52994 * 109.47256 * 295.55639 * 22 3 2 25 25 H 1.08997 * 109.47231 * 295.56237 * 1 2 3 26 26 H 1.09003 * 109.46429 * 55.56099 * 1 2 3 27 27 H 1.09005 * 109.47214 * 175.55691 * 1 2 3 28 28 H 0.96996 * 119.99520 * 4.66766 * 7 5 3 29 29 H 1.08002 * 119.91639 * 0.02562 * 9 8 7 30 30 H 1.08003 * 120.08180 * 180.25335 * 10 9 8 31 31 H 0.97001 * 119.99506 * 179.97438 * 15 14 12 32 32 H 1.08001 * 120.09132 * 179.97438 * 20 11 10 33 33 H 1.07997 * 119.91831 * 180.02562 * 21 20 11 34 34 H 1.09005 * 109.46791 * 175.55969 * 22 3 2 35 35 H 1.09005 * 109.46942 * 299.99645 * 23 22 3 36 36 H 1.09004 * 109.47271 * 59.99743 * 23 22 3 37 37 H 1.09000 * 109.46909 * 179.97438 * 23 22 3 38 38 H 1.09000 * 109.47268 * 179.69841 * 24 22 3 39 39 H 1.09004 * 109.47587 * 299.70029 * 24 22 3 40 40 H 1.09007 * 109.47003 * 59.70138 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2661 2.0344 -0.3204 5 6 3.1817 1.3337 -0.9476 6 8 3.5450 0.3134 -1.4933 7 7 3.8257 2.4929 -1.1886 8 6 4.8446 2.5393 -2.1364 9 6 5.9291 3.3958 -1.9480 10 6 6.9337 3.4425 -2.8691 11 6 6.8680 2.6316 -4.0191 12 6 7.9005 2.6793 -4.9805 13 1 7.6949 2.4155 -6.0074 14 6 9.1903 3.0683 -4.6030 15 7 9.5346 3.0551 -3.3405 16 14 10.4210 3.6065 -5.9011 17 1 10.3090 5.0722 -6.1119 18 1 11.7957 3.2752 -5.4477 19 1 10.1366 2.9000 -7.1760 20 6 5.7667 1.7733 -4.2053 21 6 4.7725 1.7334 -3.2727 22 6 2.4879 1.6510 1.4119 23 6 3.4489 0.5673 1.9047 24 6 1.2838 1.7309 2.3523 25 1 -0.3633 0.4434 0.9270 26 1 -0.3632 0.5812 -0.8476 27 1 -0.3634 -1.0246 -0.0796 28 1 3.5793 3.2948 -0.7018 29 1 5.9758 4.0201 -1.0679 30 1 7.7749 4.1033 -2.7198 31 1 10.4290 3.3245 -3.0788 32 1 5.7094 1.1490 -5.0847 33 1 3.9277 1.0756 -3.4137 34 1 3.0014 2.6124 1.3966 35 1 2.9354 -0.3941 1.9201 36 1 4.3068 0.5103 1.2347 37 1 3.7895 0.8137 2.9104 38 1 1.6246 1.9718 3.3593 39 1 0.6017 2.5067 2.0043 40 1 0.7671 0.7712 2.3635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351013630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:18 Heat of formation + Delta-G solvation = -87.957292 kcal Electronic energy + Delta-G solvation = -21438.904175 eV Core-core repulsion = 18217.471719 eV Total energy + Delta-G solvation = -3221.432456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.51825 -39.66144 -38.47852 -36.21869 -35.60053 -34.62961 -31.51515 -31.04392 -29.31332 -28.11109 -27.16094 -26.08425 -23.54501 -22.69295 -21.91697 -20.80705 -19.30670 -18.76097 -17.99151 -17.52804 -17.07196 -16.57222 -15.98254 -15.90104 -15.64678 -15.00773 -14.76168 -14.64317 -14.39415 -14.05720 -13.91734 -13.71831 -13.32991 -13.24263 -12.98877 -12.86063 -12.77719 -12.56560 -12.41930 -12.26979 -12.01625 -11.74786 -11.64366 -11.44610 -11.17592 -10.93903 -10.72548 -10.25781 -9.49055 -8.87116 -8.61426 -6.28801 0.78291 1.11611 1.39207 1.44508 1.52958 1.76775 2.05669 2.22210 2.73335 3.05483 3.64801 3.68420 3.75034 3.91321 4.15710 4.32000 4.38302 4.47234 4.49826 4.56200 4.68386 4.82017 4.85000 4.90269 4.94000 5.02841 5.09421 5.13529 5.15133 5.29592 5.37164 5.42282 5.43892 5.63882 5.85776 5.99768 6.06407 6.16520 6.35913 6.63499 6.74077 6.91626 6.97640 7.40024 8.32645 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039729 B = 0.003630 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.614020 B = 7712.502521 C = 8066.078836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.385 6.385 3 C 0.086 3.914 4 H 0.119 0.881 5 C 0.492 3.508 6 O -0.566 6.566 7 N -0.639 5.639 8 C 0.009 3.991 9 C -0.110 4.110 10 C -0.170 4.170 11 C 0.076 3.924 12 C -0.498 4.498 13 H 0.074 0.926 14 C 0.036 3.964 15 N -0.824 5.824 16 Si 0.985 3.015 17 H -0.258 1.258 18 H -0.268 1.268 19 H -0.261 1.261 20 C -0.234 4.234 21 C -0.089 4.089 22 C -0.104 4.104 23 C -0.142 4.142 24 C -0.143 4.143 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.417 0.583 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.290 0.710 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.571 3.158 11.095 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.303 6.303 3 C 0.025 3.975 4 H 0.136 0.864 5 C 0.280 3.720 6 O -0.444 6.444 7 N -0.286 5.286 8 C -0.084 4.084 9 C -0.130 4.130 10 C -0.190 4.190 11 C 0.074 3.926 12 C -0.527 4.527 13 H 0.092 0.908 14 C -0.179 4.179 15 N -0.450 5.450 16 Si 0.806 3.194 17 H -0.182 1.182 18 H -0.192 1.192 19 H -0.185 1.185 20 C -0.255 4.255 21 C -0.110 4.110 22 C -0.123 4.123 23 C -0.200 4.200 24 C -0.200 4.200 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.255 0.745 29 H 0.145 0.855 30 H 0.128 0.872 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.071 2.274 10.896 17.941 hybrid contribution 0.604 0.282 -0.609 0.903 sum -13.467 2.556 10.287 17.138 Atomic orbital electron populations 1.23241 0.78988 1.04023 1.01658 1.88011 1.21643 1.25837 1.94773 1.22108 0.93270 0.87602 0.94520 0.86379 1.21496 0.85183 0.82813 0.82552 1.90688 1.66913 1.34625 1.52192 1.42853 1.34621 1.11810 1.39325 1.17207 0.92810 1.06426 0.92006 1.20486 0.92608 1.00439 0.99429 1.20887 0.98908 1.02153 0.97037 1.17972 0.92077 0.89331 0.93260 1.19796 0.94351 1.42062 0.96507 0.90786 1.26765 1.00792 0.92098 0.98260 1.69888 1.21484 1.34439 1.19141 0.85156 0.76350 0.79615 0.78281 1.18243 1.19227 1.18531 1.20776 0.98984 1.04228 1.01466 1.20355 0.98365 0.98917 0.93321 1.21593 0.98439 0.99888 0.92395 1.21710 0.98037 0.99363 1.00841 1.21889 0.96302 1.02686 0.99118 0.91043 0.93254 0.88871 0.74532 0.85538 0.87156 0.89961 0.88959 0.88418 0.88483 0.92668 0.96150 0.90753 0.90905 0.90554 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.42 113.37 1.18 1.46 16 2 O -0.38 -10.41 8.75 -129.99 -1.14 -11.55 16 3 C 0.09 2.09 2.37 29.85 0.07 2.16 16 4 H 0.12 2.02 7.61 -2.39 -0.02 2.00 16 5 C 0.49 17.54 5.86 87.66 0.51 18.05 16 6 O -0.57 -26.83 14.16 15.97 0.23 -26.60 16 7 N -0.64 -21.77 5.24 -303.11 -1.59 -23.36 16 8 C 0.01 0.40 6.29 38.56 0.24 0.64 16 9 C -0.11 -4.97 9.89 22.13 0.22 -4.75 16 10 C -0.17 -8.94 8.63 22.48 0.19 -8.75 16 11 C 0.08 4.28 5.56 -21.28 -0.12 4.17 16 12 C -0.50 -27.68 9.03 23.39 0.21 -27.47 16 13 H 0.07 4.00 7.90 -2.91 -0.02 3.98 16 14 C 0.04 1.83 5.13 85.24 0.44 2.27 16 15 N -0.82 -43.43 11.02 21.82 0.24 -43.19 16 16 Si 0.99 38.56 29.59 68.60 2.03 40.59 16 17 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 18 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 20 C -0.23 -12.70 9.74 22.48 0.22 -12.48 16 21 C -0.09 -4.52 8.58 22.14 0.19 -4.33 16 22 C -0.10 -1.99 2.73 -10.80 -0.03 -2.02 16 23 C -0.14 -3.50 8.81 71.98 0.63 -2.87 16 24 C -0.14 -1.77 8.39 71.98 0.60 -1.17 16 25 H 0.07 0.82 5.97 -2.39 -0.01 0.81 16 26 H 0.05 0.75 8.03 -2.39 -0.02 0.73 16 27 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.42 10.16 8.37 -92.71 -0.78 9.39 16 29 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 30 H 0.11 5.94 6.24 -2.91 -0.02 5.92 16 31 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 32 H 0.09 4.85 8.06 -2.91 -0.02 4.82 16 33 H 0.10 4.95 6.40 -2.91 -0.02 4.93 16 34 H 0.10 1.56 7.66 -2.38 -0.02 1.54 16 35 H 0.05 1.45 7.57 -2.38 -0.02 1.43 16 36 H 0.02 0.63 7.36 -2.38 -0.02 0.62 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.80 6.16 -2.38 -0.01 0.78 16 Total: -1.00 -72.52 327.77 4.61 -67.91 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.27 Total: 31.30 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 4.57 Total: -35.09 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -1.35 Total: -66.55 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.91 Total: -38.16 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -72.52 4.61 -67.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351013630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.051 kcal (2) G-P(sol) polarization free energy of solvation -72.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds