Wall clock time and date at job start Mon Mar 30 2020 01:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 116.99579 * 2 1 4 4 C 1.38868 * 120.01414 * 0.02669 * 3 2 1 5 5 C 1.38222 * 120.11086 * 179.97438 * 4 3 2 6 6 C 1.38118 * 120.13076 * 359.74264 * 5 4 3 7 7 C 1.39053 * 120.02920 * 0.50846 * 6 5 4 8 8 N 1.39517 * 120.05648 * 179.76767 * 7 6 5 9 9 C 1.46499 * 120.00071 * 247.19941 * 8 7 6 10 10 C 1.53013 * 109.47069 * 90.00030 * 9 8 7 11 11 C 1.52997 * 109.46972 * 185.00137 * 10 9 8 12 12 C 1.52995 * 109.46967 * 64.99877 * 10 9 8 13 13 C 1.34773 * 120.00272 * 67.19997 * 8 7 6 14 14 O 1.21745 * 119.99762 * 3.53233 * 13 8 7 15 15 C 1.46158 * 120.00514 * 183.53175 * 13 8 7 16 16 H 1.07998 * 119.99703 * 359.97438 * 15 13 8 17 17 C 1.40121 * 120.00247 * 180.02562 * 15 13 8 18 18 N 1.30639 * 119.99806 * 359.97438 * 17 15 13 19 19 Si 1.86807 * 120.00152 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46790 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47235 * 119.99151 * 19 17 15 22 22 H 1.48496 * 109.46687 * 239.99762 * 19 17 15 23 23 C 1.38526 * 120.01112 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.46995 * 299.99193 * 1 2 3 25 25 H 1.08994 * 109.47494 * 59.99729 * 1 2 3 26 26 H 1.09006 * 109.46812 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.94775 * 359.95035 * 4 3 2 28 28 H 1.07991 * 119.93361 * 179.97438 * 5 4 3 29 29 H 1.08007 * 119.98725 * 180.25463 * 6 5 4 30 30 H 1.09000 * 109.47324 * 330.00312 * 9 8 7 31 31 H 1.08997 * 109.47648 * 209.99797 * 9 8 7 32 32 H 1.08996 * 109.46632 * 305.00180 * 10 9 8 33 33 H 1.09004 * 109.47235 * 299.99763 * 11 10 9 34 34 H 1.08994 * 109.47388 * 59.99923 * 11 10 9 35 35 H 1.09001 * 109.46882 * 179.97438 * 11 10 9 36 36 H 1.09004 * 109.47125 * 60.00308 * 12 10 9 37 37 H 1.08993 * 109.47082 * 179.97438 * 12 10 9 38 38 H 1.09003 * 109.47451 * 300.00574 * 12 10 9 39 39 H 0.97004 * 119.99184 * 180.02562 * 18 17 15 40 40 H 1.07994 * 120.06720 * 0.04554 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2898 2.3757 0.0006 5 6 1.9151 3.6083 0.0011 6 6 3.2941 3.6862 0.0064 7 6 4.0567 2.5235 0.0006 8 7 5.4497 2.6015 0.0011 9 6 6.2087 2.1575 -1.1707 10 6 6.3986 3.3336 -2.1309 11 6 7.0810 2.8430 -3.4094 12 6 7.2698 4.4003 -1.4648 13 6 6.0972 3.0853 1.0796 14 8 5.4716 3.3941 2.0773 15 6 7.5504 3.2394 1.0514 16 1 8.1054 2.9651 0.1665 17 6 8.2236 3.7419 2.1729 18 7 7.5522 4.0732 3.2435 19 14 10.0808 3.9394 2.1366 20 1 10.5999 3.4968 0.8176 21 1 10.4312 5.3660 2.3535 22 1 10.6876 3.1118 3.2099 23 6 3.4292 1.2838 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2113 2.3184 0.0002 28 1 1.3243 4.5123 0.0011 29 1 3.7803 4.6506 0.0110 30 1 5.6635 1.3603 -1.6760 31 1 7.1832 1.7867 -0.8533 32 1 5.4269 3.7608 -2.3787 33 1 8.0528 2.4157 -3.1615 34 1 6.4604 2.0830 -3.8839 35 1 7.2159 3.6807 -4.0936 36 1 8.2415 3.9731 -1.2169 37 1 7.4055 5.2378 -2.1489 38 1 6.7836 4.7497 -0.5539 39 1 8.0183 4.4214 4.0197 40 1 4.0187 0.3789 -0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355938630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:30 Heat of formation + Delta-G solvation = -47.082898 kcal Electronic energy + Delta-G solvation = -22135.378746 eV Core-core repulsion = 18915.718737 eV Total energy + Delta-G solvation = -3219.660009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.88477 -38.60197 -36.44371 -35.38199 -33.13366 -32.24202 -30.25716 -29.04572 -27.24865 -26.88268 -25.80444 -25.15716 -22.11101 -21.93008 -19.78122 -19.45668 -17.48107 -16.49374 -15.93547 -15.64475 -15.53706 -15.47077 -14.97068 -14.41393 -14.10532 -13.76141 -13.29318 -13.16425 -12.62317 -12.40007 -12.25752 -11.92869 -11.88128 -11.75122 -11.40054 -11.23915 -11.15038 -11.08274 -10.78750 -10.67466 -10.54517 -10.39347 -10.27105 -10.14126 -9.65075 -8.90059 -8.50718 -7.82475 -7.65554 -7.25003 -6.25044 -4.66303 1.81479 1.95974 3.09615 3.18556 3.21793 3.46342 4.04121 4.23970 4.42659 4.53021 5.06519 5.20200 5.30928 5.32174 5.40623 5.45581 5.50022 5.65676 5.72368 5.85956 5.91194 5.95074 6.02538 6.15077 6.19007 6.35137 6.36465 6.52024 6.55977 6.68279 6.68669 6.86555 6.91846 7.01024 7.19789 7.32754 7.42978 7.58766 7.73564 8.16461 8.39126 8.96567 9.28458 10.51104 10.69335 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019606 B = 0.005681 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.774098 B = 4927.764830 C = 5669.807479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.128 3.872 4 C -0.230 4.230 5 C -0.075 4.075 6 C -0.147 4.147 7 C 0.229 3.771 8 N -0.603 5.603 9 C 0.133 3.867 10 C -0.111 4.111 11 C -0.142 4.142 12 C -0.141 4.141 13 C 0.556 3.444 14 O -0.564 6.564 15 C -0.534 4.534 16 H 0.083 0.917 17 C 0.086 3.914 18 N -0.764 5.764 19 Si 0.902 3.098 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.169 4.169 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.029 0.971 38 H 0.077 0.923 39 H 0.268 0.732 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 -3.493 -10.203 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.083 3.917 4 C -0.249 4.249 5 C -0.094 4.094 6 C -0.167 4.167 7 C 0.136 3.864 8 N -0.335 5.335 9 C 0.010 3.990 10 C -0.131 4.131 11 C -0.200 4.200 12 C -0.198 4.198 13 C 0.364 3.636 14 O -0.445 6.445 15 C -0.570 4.570 16 H 0.101 0.899 17 C -0.134 4.134 18 N -0.392 5.392 19 Si 0.727 3.273 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.190 4.190 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.324 -3.438 -9.420 12.418 hybrid contribution 0.622 0.253 0.007 0.671 sum -6.702 -3.185 -9.413 11.986 Atomic orbital electron populations 1.22956 0.79138 1.03241 1.01124 1.86039 1.20784 1.27486 1.89259 1.18732 0.91826 0.83741 0.97378 1.21022 0.99179 0.92421 1.12249 1.20706 0.94242 0.96575 0.97901 1.21294 0.93330 0.98574 1.03527 1.17390 0.85347 0.91047 0.92665 1.45991 1.01208 1.68687 1.17641 1.21395 0.97101 0.94715 0.85801 1.21531 0.99222 0.97557 0.94802 1.21779 1.00526 1.00498 0.97202 1.22094 1.00407 0.96715 1.00577 1.18344 0.88553 0.76833 0.79901 1.90668 1.68622 1.53566 1.31643 1.21158 0.89916 1.44826 1.01096 0.89895 1.25738 0.99540 0.93408 0.94683 1.70022 1.36365 1.30306 1.02545 0.86389 0.83335 0.78446 0.79162 1.18550 1.20128 1.20182 1.20544 0.91201 0.98347 1.08904 0.92895 0.92989 0.88791 0.86255 0.86285 0.86157 0.92821 0.89738 0.92101 0.92675 0.93351 0.93148 0.91989 0.95205 0.90376 0.92093 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -5.06 10.49 -19.42 -0.20 -5.26 16 3 C 0.13 2.26 6.68 -39.24 -0.26 2.00 16 4 C -0.23 -3.66 9.04 -39.35 -0.36 -4.02 16 5 C -0.08 -1.28 10.03 -39.63 -0.40 -1.67 16 6 C -0.15 -2.98 9.48 -39.32 -0.37 -3.35 16 7 C 0.23 4.91 4.77 -83.80 -0.40 4.51 16 8 N -0.60 -13.65 2.40 -115.12 -0.28 -13.92 16 9 C 0.13 2.47 4.88 -4.04 -0.02 2.45 16 10 C -0.11 -1.85 3.13 -90.62 -0.28 -2.14 16 11 C -0.14 -1.90 9.19 37.16 0.34 -1.55 16 12 C -0.14 -2.60 7.56 37.16 0.28 -2.32 16 13 C 0.56 15.27 6.36 -13.08 -0.08 15.19 16 14 O -0.56 -18.00 14.72 5.15 0.08 -17.92 16 15 C -0.53 -14.03 6.45 -35.70 -0.23 -14.27 16 16 H 0.08 1.98 3.93 -52.49 -0.21 1.77 16 17 C 0.09 2.31 5.50 -17.35 -0.10 2.21 16 18 N -0.76 -22.26 11.82 55.55 0.66 -21.61 16 19 Si 0.90 19.45 29.56 -169.99 -5.02 14.42 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 C -0.17 -3.35 9.60 -39.21 -0.38 -3.73 16 24 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 25 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.12 1.52 6.29 -52.49 -0.33 1.19 16 28 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.12 2.53 8.06 -52.48 -0.42 2.11 16 30 H 0.05 0.89 7.84 -51.93 -0.41 0.48 16 31 H 0.08 1.61 6.25 -51.93 -0.32 1.28 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.16 6.34 -51.93 -0.33 0.84 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 1.73 5.75 -51.93 -0.30 1.43 16 39 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 40 H 0.13 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 325.85 15.07 4.91 4.91 Total: -1.00 -32.98 325.85 -6.75 -39.73 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.63 Total: 5.01 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -1.26 Total: -5.36 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.38 Total: -35.53 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.13 Total: -23.19 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.98 -6.75 -39.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355938630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.352 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds