Wall clock time and date at job start Mon Mar 30 2020 01:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 116.99579 * 2 1 4 4 C 1.38868 * 120.01414 * 0.02669 * 3 2 1 5 5 C 1.38222 * 120.11086 * 179.97438 * 4 3 2 6 6 C 1.38118 * 120.13076 * 359.74264 * 5 4 3 7 7 C 1.39053 * 120.02920 * 0.50846 * 6 5 4 8 8 N 1.39517 * 120.05648 * 179.76767 * 7 6 5 9 9 C 1.46499 * 120.00071 * 247.19941 * 8 7 6 10 10 C 1.53013 * 109.47069 * 90.00030 * 9 8 7 11 11 C 1.52997 * 109.46972 * 185.00137 * 10 9 8 12 12 C 1.52995 * 109.46967 * 64.99877 * 10 9 8 13 13 C 1.34773 * 120.00272 * 67.19997 * 8 7 6 14 14 O 1.21745 * 119.99762 * 3.53233 * 13 8 7 15 15 C 1.46158 * 120.00514 * 183.53175 * 13 8 7 16 16 H 1.07998 * 119.99703 * 359.97438 * 15 13 8 17 17 C 1.40121 * 120.00247 * 180.02562 * 15 13 8 18 18 N 1.30639 * 119.99806 * 359.97438 * 17 15 13 19 19 Si 1.86807 * 120.00152 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46790 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47235 * 119.99151 * 19 17 15 22 22 H 1.48496 * 109.46687 * 239.99762 * 19 17 15 23 23 C 1.38526 * 120.01112 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.46995 * 299.99193 * 1 2 3 25 25 H 1.08994 * 109.47494 * 59.99729 * 1 2 3 26 26 H 1.09006 * 109.46812 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.94775 * 359.95035 * 4 3 2 28 28 H 1.07991 * 119.93361 * 179.97438 * 5 4 3 29 29 H 1.08007 * 119.98725 * 180.25463 * 6 5 4 30 30 H 1.09000 * 109.47324 * 330.00312 * 9 8 7 31 31 H 1.08997 * 109.47648 * 209.99797 * 9 8 7 32 32 H 1.08996 * 109.46632 * 305.00180 * 10 9 8 33 33 H 1.09004 * 109.47235 * 299.99763 * 11 10 9 34 34 H 1.08994 * 109.47388 * 59.99923 * 11 10 9 35 35 H 1.09001 * 109.46882 * 179.97438 * 11 10 9 36 36 H 1.09004 * 109.47125 * 60.00308 * 12 10 9 37 37 H 1.08993 * 109.47082 * 179.97438 * 12 10 9 38 38 H 1.09003 * 109.47451 * 300.00574 * 12 10 9 39 39 H 0.97004 * 119.99184 * 180.02562 * 18 17 15 40 40 H 1.07994 * 120.06720 * 0.04554 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2898 2.3757 0.0006 5 6 1.9151 3.6083 0.0011 6 6 3.2941 3.6862 0.0064 7 6 4.0567 2.5235 0.0006 8 7 5.4497 2.6015 0.0011 9 6 6.2087 2.1575 -1.1707 10 6 6.3986 3.3336 -2.1309 11 6 7.0810 2.8430 -3.4094 12 6 7.2698 4.4003 -1.4648 13 6 6.0972 3.0853 1.0796 14 8 5.4716 3.3941 2.0773 15 6 7.5504 3.2394 1.0514 16 1 8.1054 2.9651 0.1665 17 6 8.2236 3.7419 2.1729 18 7 7.5522 4.0732 3.2435 19 14 10.0808 3.9394 2.1366 20 1 10.5999 3.4968 0.8176 21 1 10.4312 5.3660 2.3535 22 1 10.6876 3.1118 3.2099 23 6 3.4292 1.2838 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2113 2.3184 0.0002 28 1 1.3243 4.5123 0.0011 29 1 3.7803 4.6506 0.0110 30 1 5.6635 1.3603 -1.6760 31 1 7.1832 1.7867 -0.8533 32 1 5.4269 3.7608 -2.3787 33 1 8.0528 2.4157 -3.1615 34 1 6.4604 2.0830 -3.8839 35 1 7.2159 3.6807 -4.0936 36 1 8.2415 3.9731 -1.2169 37 1 7.4055 5.2378 -2.1489 38 1 6.7836 4.7497 -0.5539 39 1 8.0183 4.4214 4.0197 40 1 4.0187 0.3789 -0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355938630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:29 Heat of formation + Delta-G solvation = -67.737395 kcal Electronic energy + Delta-G solvation = -22136.274392 eV Core-core repulsion = 18915.718737 eV Total energy + Delta-G solvation = -3220.555655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33439 -40.14891 -37.93033 -37.11182 -34.91817 -34.12007 -31.64681 -30.55989 -28.83430 -28.00742 -27.38154 -26.70196 -23.70872 -23.41075 -21.32220 -20.97894 -19.00625 -18.22974 -17.68367 -17.17605 -16.95522 -16.58837 -16.53336 -16.09525 -15.59478 -15.28165 -14.67444 -14.51357 -14.41505 -13.79730 -13.67886 -13.47205 -13.22604 -13.18329 -12.95217 -12.82479 -12.70165 -12.63381 -12.22713 -12.04807 -11.99994 -11.90657 -11.75882 -11.61166 -11.27724 -10.90524 -10.06393 -9.78168 -9.27663 -8.93284 -8.27292 -6.75710 0.36422 0.50803 1.39233 1.40460 1.56925 2.18563 2.32569 2.46198 2.81141 2.84856 3.63953 3.88716 4.02140 4.11469 4.19136 4.31512 4.33634 4.35800 4.44270 4.53536 4.61157 4.69094 4.75061 4.77061 4.89774 4.97141 5.02454 5.15249 5.21047 5.27676 5.33441 5.38565 5.44975 5.48064 5.61714 5.70120 5.76339 5.84547 6.20934 6.46165 6.61998 6.90430 7.35776 8.48449 8.69048 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019606 B = 0.005681 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.774098 B = 4927.764830 C = 5669.807479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.134 3.866 4 C -0.217 4.217 5 C -0.067 4.067 6 C -0.174 4.174 7 C 0.197 3.803 8 N -0.602 5.602 9 C 0.129 3.871 10 C -0.104 4.104 11 C -0.133 4.133 12 C -0.134 4.134 13 C 0.545 3.455 14 O -0.623 6.623 15 C -0.543 4.543 16 H 0.104 0.896 17 C 0.030 3.970 18 N -0.821 5.821 19 Si 0.984 3.016 20 H -0.240 1.240 21 H -0.271 1.271 22 H -0.273 1.273 23 C -0.190 4.190 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.121 0.879 27 H 0.162 0.838 28 H 0.153 0.847 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.032 0.968 39 H 0.272 0.728 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 -4.268 -12.398 15.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.088 3.912 4 C -0.236 4.236 5 C -0.085 4.085 6 C -0.194 4.194 7 C 0.105 3.895 8 N -0.333 5.333 9 C 0.007 3.993 10 C -0.124 4.124 11 C -0.191 4.191 12 C -0.191 4.191 13 C 0.353 3.647 14 O -0.509 6.509 15 C -0.579 4.579 16 H 0.122 0.878 17 C -0.185 4.185 18 N -0.451 5.451 19 Si 0.803 3.197 20 H -0.162 1.162 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.210 4.210 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.139 0.861 27 H 0.180 0.820 28 H 0.171 0.829 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.920 -4.247 -11.689 14.744 hybrid contribution 0.582 0.420 0.645 0.965 sum -7.338 -3.828 -11.044 13.801 Atomic orbital electron populations 1.23381 0.76160 1.05644 1.02459 1.86032 1.23796 1.26459 1.88760 1.18788 0.91235 0.85206 0.96001 1.21437 1.01167 0.91081 1.09883 1.21068 0.92885 0.98616 0.95944 1.21280 0.95109 0.97220 1.05841 1.17626 0.84828 0.92258 0.94780 1.45706 1.02258 1.67754 1.17616 1.21619 0.96515 0.96177 0.85025 1.21451 0.98983 0.96133 0.95806 1.21707 1.00616 1.01493 0.95305 1.21950 0.99864 0.98039 0.99244 1.18714 0.89336 0.76447 0.80215 1.90603 1.69870 1.56185 1.34250 1.21584 0.89921 1.44447 1.01986 0.87794 1.26924 1.05395 0.92333 0.93853 1.70209 1.39130 1.32035 1.03769 0.85162 0.75845 0.78510 0.80137 1.16209 1.19634 1.19778 1.20521 0.92740 0.97343 1.10442 0.91978 0.91041 0.86130 0.82020 0.82916 0.88512 0.90813 0.90445 0.92766 0.92044 0.91760 0.91602 0.92355 0.93029 0.94910 0.91846 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -9.87 10.49 -92.40 -0.97 -10.84 16 3 C 0.13 4.54 6.68 22.49 0.15 4.69 16 4 C -0.22 -6.37 9.04 22.42 0.20 -6.16 16 5 C -0.07 -2.18 10.03 22.24 0.22 -1.95 16 6 C -0.17 -7.33 9.48 22.44 0.21 -7.12 16 7 C 0.20 8.85 4.77 38.28 0.18 9.03 16 8 N -0.60 -28.62 2.40 -636.32 -1.53 -30.15 16 9 C 0.13 4.84 4.88 86.38 0.42 5.26 16 10 C -0.10 -3.41 3.13 -10.79 -0.03 -3.45 16 11 C -0.13 -3.22 9.19 71.98 0.66 -2.56 16 12 C -0.13 -4.96 7.56 71.98 0.54 -4.42 16 13 C 0.54 31.65 6.36 86.30 0.55 32.20 16 14 O -0.62 -42.47 14.72 -4.49 -0.07 -42.54 16 15 C -0.54 -29.61 6.45 24.78 0.16 -29.45 16 16 H 0.10 5.03 3.93 -2.91 -0.01 5.01 16 17 C 0.03 1.64 5.50 85.33 0.47 2.11 16 18 N -0.82 -50.27 11.82 21.85 0.26 -50.01 16 19 Si 0.98 40.40 29.56 68.60 2.03 42.42 16 20 H -0.24 -8.87 7.11 99.48 0.71 -8.16 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 C -0.19 -7.68 9.60 22.51 0.22 -7.46 16 24 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 25 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 26 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.16 3.34 6.29 -2.91 -0.02 3.32 16 28 H 0.15 3.86 8.06 -2.92 -0.02 3.84 16 29 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.07 2.44 7.84 -2.39 -0.02 2.42 16 31 H 0.08 2.98 6.25 -2.39 -0.01 2.96 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 2.16 6.34 -2.38 -0.02 2.14 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.03 1.50 5.75 -2.39 -0.01 1.49 16 39 H 0.27 15.15 8.29 -92.71 -0.77 14.38 16 40 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -77.63 325.85 5.83 -71.80 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 1.04 Total: 27.16 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.07 Total: -7.85 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -1.27 Total: -80.16 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -1.04 Total: -53.38 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -77.63 5.83 -71.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355938630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.063 kcal (2) G-P(sol) polarization free energy of solvation -77.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds