Wall clock time and date at job start Mon Mar 30 2020 01:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35907 * 116.99692 * 2 1 4 4 C 1.38874 * 119.96772 * 180.02562 * 3 2 1 5 5 C 1.37959 * 120.02576 * 180.02562 * 4 3 2 6 6 C 1.39097 * 119.97323 * 359.97356 * 5 4 3 7 7 N 1.39520 * 120.02998 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99671 * 67.47563 * 7 6 5 9 9 C 1.53007 * 109.46584 * 90.00518 * 8 7 6 10 10 C 1.53001 * 109.47208 * 64.99775 * 9 8 7 11 11 C 1.53002 * 109.46573 * 184.99543 * 9 8 7 12 12 C 1.34772 * 120.00025 * 247.48258 * 7 6 5 13 13 O 1.21774 * 120.00346 * 3.56929 * 12 7 6 14 14 C 1.41770 * 119.99784 * 183.56984 * 12 7 6 15 15 H 1.08003 * 120.00634 * 0.02562 * 14 12 7 16 16 C 1.40141 * 119.99756 * 179.97438 * 14 12 7 17 17 N 1.30629 * 120.00139 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 119.99820 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47087 * 60.00501 * 18 16 14 20 20 H 1.48496 * 109.46957 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47046 * 300.00559 * 18 16 14 22 22 C 1.39106 * 119.94635 * 0.27990 * 6 5 4 23 23 C 1.37962 * 119.96760 * 359.46424 * 22 6 5 24 24 H 1.09000 * 109.47096 * 300.00465 * 1 2 3 25 25 H 1.09004 * 109.47008 * 60.00211 * 1 2 3 26 26 H 1.08994 * 109.47275 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.98245 * 0.02562 * 4 3 2 28 28 H 1.08009 * 120.00741 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46844 * 210.00103 * 8 7 6 30 30 H 1.08992 * 109.47302 * 330.00588 * 8 7 6 31 31 H 1.08992 * 109.47023 * 304.99939 * 9 8 7 32 32 H 1.09001 * 109.46984 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.47172 * 299.99782 * 10 9 8 34 34 H 1.09004 * 109.47093 * 59.99763 * 10 9 8 35 35 H 1.09003 * 109.47118 * 60.00399 * 11 9 8 36 36 H 1.08999 * 109.46614 * 180.02562 * 11 9 8 37 37 H 1.09000 * 109.47610 * 299.99603 * 11 9 8 38 38 H 0.97002 * 119.99657 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.01907 * 179.70627 * 22 6 5 40 40 H 1.08001 * 119.98728 * 180.22945 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4329 1.2829 -0.0005 5 6 4.0604 2.5116 0.0000 6 6 3.3033 3.6785 0.0005 7 7 3.9367 4.9217 0.0005 8 6 4.7019 5.3539 -1.1717 9 6 3.7806 6.1095 -2.1317 10 6 3.2973 7.3993 -1.4656 11 6 4.5475 6.4522 -3.4105 12 6 3.8448 5.7248 1.0789 13 8 3.2641 5.3394 2.0775 14 6 4.4241 7.0184 1.0507 15 1 4.9388 7.3605 0.1649 16 6 4.3280 7.8537 2.1718 17 7 3.7051 7.4402 3.2430 18 14 5.0908 9.5586 2.1344 19 1 4.4743 10.3528 1.0415 20 1 4.8525 10.2360 3.4342 21 1 6.5522 9.4419 1.8980 22 6 1.9142 3.6051 0.0064 23 6 1.2891 2.3752 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 4.0203 0.3767 -0.0014 28 1 5.1390 2.5672 0.0000 29 1 5.5128 6.0096 -0.8547 30 1 5.1163 4.4816 -1.6769 31 1 2.9225 5.4847 -2.3790 32 1 2.6414 7.9377 -2.1497 33 1 2.7510 7.1551 -0.5545 34 1 4.1555 8.0241 -1.2182 35 1 4.8918 5.5333 -3.8851 36 1 3.8914 6.9909 -4.0942 37 1 5.4057 7.0771 -3.1632 38 1 3.6390 8.0183 4.0191 39 1 1.3254 4.5104 0.0116 40 1 0.2106 2.3179 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355948336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:33 Heat of formation + Delta-G solvation = -45.081557 kcal Electronic energy + Delta-G solvation = -22112.781620 eV Core-core repulsion = 18893.208395 eV Total energy + Delta-G solvation = -3219.573225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.84526 -38.64446 -36.43304 -35.38335 -33.05171 -32.12740 -30.64258 -28.97023 -27.40669 -26.76097 -25.88686 -24.91485 -22.32508 -21.72149 -19.78241 -19.37914 -17.80298 -16.65240 -15.92950 -15.77765 -15.58058 -15.46893 -14.44552 -14.11575 -14.05095 -13.74419 -13.28612 -12.99986 -12.73551 -12.57299 -12.26523 -12.03096 -11.80607 -11.77535 -11.59761 -11.25595 -11.20953 -11.05326 -10.73566 -10.59629 -10.46626 -10.34986 -10.30377 -10.16269 -9.62081 -8.89003 -8.51538 -7.96203 -7.60305 -7.01766 -6.26137 -4.73183 1.84469 1.95518 3.10305 3.16551 3.17277 3.53920 4.03080 4.25388 4.46425 4.51779 5.11091 5.24041 5.26675 5.38315 5.41025 5.46383 5.51927 5.65934 5.80184 5.84483 5.88343 5.96288 6.11365 6.17489 6.19246 6.35244 6.44265 6.48432 6.56977 6.58868 6.68859 6.80275 6.92318 7.08956 7.22760 7.31810 7.38865 7.65224 7.81218 8.14723 8.50058 8.93059 9.40102 10.51152 10.75474 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020039 B = 0.005591 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.920735 B = 5006.677572 C = 5837.210459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.097 3.903 4 C -0.142 4.142 5 C -0.101 4.101 6 C 0.160 3.840 7 N -0.604 5.604 8 C 0.134 3.866 9 C -0.111 4.111 10 C -0.140 4.140 11 C -0.142 4.142 12 C 0.557 3.443 13 O -0.573 6.573 14 C -0.537 4.537 15 H 0.080 0.920 16 C 0.089 3.911 17 N -0.753 5.753 18 Si 0.901 3.099 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.076 4.076 23 C -0.196 4.196 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.028 0.972 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.270 0.730 39 H 0.121 0.879 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 -6.260 -10.023 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.238 6.238 3 C 0.053 3.947 4 C -0.162 4.162 5 C -0.122 4.122 6 C 0.067 3.933 7 N -0.336 5.336 8 C 0.011 3.989 9 C -0.131 4.131 10 C -0.197 4.197 11 C -0.200 4.200 12 C 0.367 3.633 13 O -0.456 6.456 14 C -0.573 4.573 15 H 0.098 0.902 16 C -0.133 4.133 17 N -0.381 5.381 18 Si 0.725 3.275 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.191 1.191 22 C -0.096 4.096 23 C -0.215 4.215 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.111 0.889 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.139 0.861 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.146 -6.570 -9.239 11.538 hybrid contribution 0.088 1.054 -0.032 1.059 sum -2.057 -5.516 -9.271 10.982 Atomic orbital electron populations 1.22951 0.79179 1.03143 1.01257 1.85998 1.20765 1.27471 1.89584 1.18933 0.92233 0.83685 0.99895 1.20138 0.91082 0.97899 1.07038 1.21150 0.99767 0.91126 1.00118 1.17625 0.90657 0.86599 0.98420 1.45914 1.54956 1.15430 1.17349 1.21353 0.94006 0.97578 0.85986 1.21538 0.98617 0.98160 0.94817 1.22084 1.01207 0.95819 1.00608 1.21783 1.00227 1.00740 0.97256 1.16988 0.81191 0.84874 0.80240 1.90678 1.47789 1.75550 1.31568 1.20312 1.37075 0.98766 1.01117 0.90183 1.25748 0.93567 0.99313 0.94671 1.70025 1.30339 1.35366 1.02414 0.86527 0.80307 0.82401 0.78225 1.19001 1.20551 1.19136 1.21168 0.94420 0.96784 0.97247 1.21022 0.99342 0.92141 1.09017 0.92840 0.93013 0.88852 0.85839 0.85778 0.89984 0.93024 0.92183 0.95285 0.90344 0.92155 0.93354 0.93220 0.92724 0.91942 0.86138 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.91 10.50 -19.45 -0.20 -5.12 16 3 C 0.10 1.66 6.69 -39.11 -0.26 1.40 16 4 C -0.14 -2.43 9.98 -39.45 -0.39 -2.82 16 5 C -0.10 -1.90 9.66 -39.36 -0.38 -2.28 16 6 C 0.16 3.39 4.77 -83.72 -0.40 2.99 16 7 N -0.60 -13.53 2.40 -116.57 -0.28 -13.81 16 8 C 0.13 2.47 4.88 -4.03 -0.02 2.45 16 9 C -0.11 -1.85 3.13 -90.61 -0.28 -2.13 16 10 C -0.14 -2.59 7.57 37.16 0.28 -2.31 16 11 C -0.14 -1.89 9.19 37.16 0.34 -1.54 16 12 C 0.56 15.23 6.25 -14.91 -0.09 15.14 16 13 O -0.57 -18.25 14.59 5.12 0.07 -18.17 16 14 C -0.54 -14.07 6.31 -37.52 -0.24 -14.30 16 15 H 0.08 1.89 3.81 -52.48 -0.20 1.69 16 16 C 0.09 2.36 5.50 -17.35 -0.10 2.26 16 17 N -0.75 -21.83 11.73 55.56 0.65 -21.17 16 18 Si 0.90 19.28 29.56 -169.99 -5.02 14.25 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 C -0.08 -1.54 9.48 -39.36 -0.37 -1.92 16 23 C -0.20 -3.42 9.03 -39.45 -0.36 -3.78 16 24 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 25 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 29 H 0.08 1.55 6.25 -51.93 -0.32 1.22 16 30 H 0.05 0.84 7.84 -51.93 -0.41 0.43 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.74 5.75 -51.93 -0.30 1.45 16 34 H 0.06 1.13 6.40 -51.93 -0.33 0.80 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 39 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 40 H 0.12 1.77 6.29 -52.49 -0.33 1.44 16 LS Contribution 325.32 15.07 4.90 4.90 Total: -1.00 -32.71 325.32 -6.79 -39.49 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.63 Total: 5.17 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.28 Total: -5.53 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.37 Total: -34.99 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.13 Total: -23.29 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.71 -6.79 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355948336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.589 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds