Wall clock time and date at job start Mon Mar 30 2020 01:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35907 * 116.99692 * 2 1 4 4 C 1.38874 * 119.96772 * 180.02562 * 3 2 1 5 5 C 1.37959 * 120.02576 * 180.02562 * 4 3 2 6 6 C 1.39097 * 119.97323 * 359.97356 * 5 4 3 7 7 N 1.39520 * 120.02998 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99671 * 67.47563 * 7 6 5 9 9 C 1.53007 * 109.46584 * 90.00518 * 8 7 6 10 10 C 1.53001 * 109.47208 * 64.99775 * 9 8 7 11 11 C 1.53002 * 109.46573 * 184.99543 * 9 8 7 12 12 C 1.34772 * 120.00025 * 247.48258 * 7 6 5 13 13 O 1.21774 * 120.00346 * 3.56929 * 12 7 6 14 14 C 1.41770 * 119.99784 * 183.56984 * 12 7 6 15 15 H 1.08003 * 120.00634 * 0.02562 * 14 12 7 16 16 C 1.40141 * 119.99756 * 179.97438 * 14 12 7 17 17 N 1.30629 * 120.00139 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 119.99820 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47087 * 60.00501 * 18 16 14 20 20 H 1.48496 * 109.46957 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47046 * 300.00559 * 18 16 14 22 22 C 1.39106 * 119.94635 * 0.27990 * 6 5 4 23 23 C 1.37962 * 119.96760 * 359.46424 * 22 6 5 24 24 H 1.09000 * 109.47096 * 300.00465 * 1 2 3 25 25 H 1.09004 * 109.47008 * 60.00211 * 1 2 3 26 26 H 1.08994 * 109.47275 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.98245 * 0.02562 * 4 3 2 28 28 H 1.08009 * 120.00741 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46844 * 210.00103 * 8 7 6 30 30 H 1.08992 * 109.47302 * 330.00588 * 8 7 6 31 31 H 1.08992 * 109.47023 * 304.99939 * 9 8 7 32 32 H 1.09001 * 109.46984 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.47172 * 299.99782 * 10 9 8 34 34 H 1.09004 * 109.47093 * 59.99763 * 10 9 8 35 35 H 1.09003 * 109.47118 * 60.00399 * 11 9 8 36 36 H 1.08999 * 109.46614 * 180.02562 * 11 9 8 37 37 H 1.09000 * 109.47610 * 299.99603 * 11 9 8 38 38 H 0.97002 * 119.99657 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.01907 * 179.70627 * 22 6 5 40 40 H 1.08001 * 119.98728 * 180.22945 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4329 1.2829 -0.0005 5 6 4.0604 2.5116 0.0000 6 6 3.3033 3.6785 0.0005 7 7 3.9367 4.9217 0.0005 8 6 4.7019 5.3539 -1.1717 9 6 3.7806 6.1095 -2.1317 10 6 3.2973 7.3993 -1.4656 11 6 4.5475 6.4522 -3.4105 12 6 3.8448 5.7248 1.0789 13 8 3.2641 5.3394 2.0775 14 6 4.4241 7.0184 1.0507 15 1 4.9388 7.3605 0.1649 16 6 4.3280 7.8537 2.1718 17 7 3.7051 7.4402 3.2430 18 14 5.0908 9.5586 2.1344 19 1 4.4743 10.3528 1.0415 20 1 4.8525 10.2360 3.4342 21 1 6.5522 9.4419 1.8980 22 6 1.9142 3.6051 0.0064 23 6 1.2891 2.3752 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 4.0203 0.3767 -0.0014 28 1 5.1390 2.5672 0.0000 29 1 5.5128 6.0096 -0.8547 30 1 5.1163 4.4816 -1.6769 31 1 2.9225 5.4847 -2.3790 32 1 2.6414 7.9377 -2.1497 33 1 2.7510 7.1551 -0.5545 34 1 4.1555 8.0241 -1.2182 35 1 4.8918 5.5333 -3.8851 36 1 3.8914 6.9909 -4.0942 37 1 5.4057 7.0771 -3.1632 38 1 3.6390 8.0183 4.0191 39 1 1.3254 4.5104 0.0116 40 1 0.2106 2.3179 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355948336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:32 Heat of formation + Delta-G solvation = -65.225118 kcal Electronic energy + Delta-G solvation = -22113.655110 eV Core-core repulsion = 18893.208395 eV Total energy + Delta-G solvation = -3220.446715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29811 -40.18394 -37.93692 -37.06622 -34.87449 -33.95117 -32.06599 -30.47983 -28.92034 -28.02645 -27.39573 -26.44232 -23.85424 -23.23953 -21.35862 -20.93937 -19.09208 -18.45490 -17.72014 -17.36837 -17.08723 -16.57974 -16.10444 -15.60587 -15.47697 -15.23345 -14.64945 -14.55196 -14.30415 -14.00965 -13.73991 -13.57757 -13.27326 -13.18945 -12.97243 -12.81834 -12.68402 -12.62483 -12.21200 -12.09000 -11.99412 -11.87175 -11.70778 -11.60577 -11.24077 -10.86846 -9.96391 -9.73511 -9.54751 -8.64171 -8.26453 -6.80422 0.40065 0.48270 1.40178 1.42191 1.53284 2.23868 2.40456 2.47075 2.81326 2.85472 3.71895 3.88759 3.94364 4.06408 4.21631 4.34722 4.36692 4.40797 4.42597 4.52046 4.66504 4.72102 4.74204 4.79769 4.94380 5.01113 5.05662 5.10635 5.16568 5.23292 5.34701 5.35523 5.37134 5.54873 5.67033 5.72654 5.75652 5.99445 6.18952 6.43132 6.75375 6.88506 7.49021 8.53060 8.74057 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020039 B = 0.005591 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.920735 B = 5006.677572 C = 5837.210459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.103 3.897 4 C -0.140 4.140 5 C -0.105 4.105 6 C 0.124 3.876 7 N -0.602 5.602 8 C 0.130 3.870 9 C -0.105 4.105 10 C -0.134 4.134 11 C -0.133 4.133 12 C 0.546 3.454 13 O -0.633 6.633 14 C -0.548 4.548 15 H 0.102 0.898 16 C 0.033 3.967 17 N -0.810 5.810 18 Si 0.981 3.019 19 H -0.251 1.251 20 H -0.279 1.279 21 H -0.252 1.252 22 C -0.097 4.097 23 C -0.194 4.194 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.126 0.874 27 H 0.153 0.847 28 H 0.136 0.864 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.032 0.968 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.272 0.728 39 H 0.096 0.904 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.075 -6.742 -12.206 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.058 3.942 4 C -0.159 4.159 5 C -0.124 4.124 6 C 0.031 3.969 7 N -0.334 5.334 8 C 0.007 3.993 9 C -0.124 4.124 10 C -0.191 4.191 11 C -0.191 4.191 12 C 0.356 3.644 13 O -0.520 6.520 14 C -0.583 4.583 15 H 0.120 0.880 16 C -0.184 4.184 17 N -0.440 5.440 18 Si 0.801 3.199 19 H -0.174 1.174 20 H -0.204 1.204 21 H -0.176 1.176 22 C -0.117 4.117 23 C -0.213 4.213 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.144 0.856 27 H 0.170 0.830 28 H 0.154 0.846 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.345 -7.083 -11.495 13.569 hybrid contribution -0.274 1.025 0.599 1.218 sum -1.619 -6.058 -10.896 12.572 Atomic orbital electron populations 1.23319 0.76813 1.05581 1.01883 1.86008 1.23161 1.26062 1.89052 1.19048 0.92503 0.84256 0.98369 1.20450 0.91571 0.98219 1.05622 1.21259 1.00304 0.90902 0.99979 1.17915 0.91275 0.86804 1.00860 1.45610 1.54866 1.15568 1.17312 1.21584 0.93827 0.98724 0.85122 1.21459 0.98435 0.96646 0.95910 1.21946 1.00874 0.97039 0.99220 1.21709 1.00157 1.01930 0.95324 1.17350 0.80601 0.85854 0.80581 1.90616 1.50223 1.76958 1.34238 1.20738 1.36831 0.98704 1.02009 0.88027 1.26930 0.93487 1.04100 0.93839 1.70216 1.32588 1.37571 1.03616 0.85301 0.79826 0.76210 0.78559 1.17437 1.20403 1.17556 1.21108 0.94361 0.97174 0.99083 1.21207 1.00727 0.91247 1.08108 0.92782 0.91785 0.85638 0.82982 0.84622 0.90628 0.90520 0.92982 0.93308 0.94922 0.92435 0.91633 0.91872 0.92020 0.91782 0.88552 0.83675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -9.12 10.50 -92.51 -0.97 -10.09 16 3 C 0.10 3.38 6.69 22.57 0.15 3.53 16 4 C -0.14 -4.55 9.98 22.36 0.22 -4.33 16 5 C -0.10 -3.88 9.66 22.41 0.22 -3.67 16 6 C 0.12 5.39 4.77 38.33 0.18 5.57 16 7 N -0.60 -27.92 2.40 -640.91 -1.54 -29.46 16 8 C 0.13 4.72 4.88 86.38 0.42 5.14 16 9 C -0.10 -3.39 3.13 -10.79 -0.03 -3.42 16 10 C -0.13 -4.94 7.57 71.98 0.55 -4.39 16 11 C -0.13 -3.15 9.19 71.98 0.66 -2.49 16 12 C 0.55 31.29 6.25 85.12 0.53 31.82 16 13 O -0.63 -42.79 14.59 -4.58 -0.07 -42.86 16 14 C -0.55 -29.51 6.31 23.61 0.15 -29.36 16 15 H 0.10 4.84 3.81 -2.91 -0.01 4.83 16 16 C 0.03 1.81 5.50 85.33 0.47 2.28 16 17 N -0.81 -49.17 11.73 21.85 0.26 -48.91 16 18 Si 0.98 39.83 29.56 68.60 2.03 41.86 16 19 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 20 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 22 C -0.10 -4.11 9.48 22.41 0.21 -3.90 16 23 C -0.19 -6.72 9.03 22.35 0.20 -6.52 16 24 H 0.05 1.04 7.66 -2.39 -0.02 1.02 16 25 H 0.06 1.08 7.66 -2.38 -0.02 1.06 16 26 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 28 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 29 H 0.08 2.82 6.25 -2.39 -0.01 2.80 16 30 H 0.08 2.38 7.84 -2.39 -0.02 2.36 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 1.49 5.75 -2.39 -0.01 1.48 16 34 H 0.06 2.11 6.40 -2.38 -0.02 2.09 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.27 15.10 8.29 -92.71 -0.77 14.33 16 39 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 40 H 0.15 4.14 6.29 -2.91 -0.02 4.13 16 Total: -1.00 -75.65 325.32 5.79 -69.86 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 1.04 Total: 27.87 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 5.05 Total: -8.27 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.28 Total: -78.37 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -1.04 Total: -52.96 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -75.65 5.79 -69.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355948336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.637 kcal (2) G-P(sol) polarization free energy of solvation -75.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds