Wall clock time and date at job start Mon Mar 30 2020 02:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47227 * 2 1 4 4 C 1.52995 * 109.46944 * 120.00093 * 2 1 3 5 5 O 1.42896 * 109.47465 * 175.00029 * 4 2 1 6 6 C 1.35917 * 117.00499 * 180.02562 * 5 4 2 7 7 C 1.38867 * 119.97550 * 359.72863 * 6 5 4 8 8 C 1.38268 * 120.24529 * 179.72293 * 7 6 5 9 9 C 1.37984 * 120.21379 * 0.55002 * 8 7 6 10 10 C 1.39637 * 119.95778 * 359.72457 * 9 8 7 11 11 C 1.47736 * 120.12364 * 180.02562 * 10 9 8 12 12 O 1.21593 * 120.00153 * 215.22388 * 11 10 9 13 13 N 1.34774 * 120.00346 * 35.22014 * 11 10 9 14 14 C 1.46501 * 119.99566 * 5.84797 * 13 11 10 15 15 C 1.36873 * 120.00321 * 185.84645 * 13 11 10 16 16 H 1.07996 * 120.00163 * 335.03121 * 15 13 11 17 17 C 1.39055 * 119.99846 * 155.02975 * 15 13 11 18 18 N 1.31360 * 119.99986 * 349.51694 * 17 15 13 19 19 Si 1.86797 * 119.99658 * 169.51627 * 17 15 13 20 20 H 1.48497 * 109.47300 * 90.00132 * 19 17 15 21 21 H 1.48501 * 109.46966 * 210.00004 * 19 17 15 22 22 H 1.48502 * 109.47437 * 329.99641 * 19 17 15 23 23 C 1.38426 * 119.97895 * 180.02562 * 6 5 4 24 24 H 1.08998 * 109.47432 * 299.99775 * 1 2 3 25 25 H 1.09003 * 109.47261 * 59.99862 * 1 2 3 26 26 H 1.08996 * 109.47320 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47263 * 239.99958 * 2 1 3 28 28 H 1.09002 * 109.47221 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47271 * 299.99895 * 3 2 1 30 30 H 1.09005 * 109.47072 * 60.00370 * 3 2 1 31 31 H 1.08999 * 109.47411 * 294.99988 * 4 2 1 32 32 H 1.09001 * 109.47142 * 54.99865 * 4 2 1 33 33 H 1.07998 * 119.87969 * 359.97438 * 7 6 5 34 34 H 1.08001 * 119.89419 * 180.27187 * 8 7 6 35 35 H 1.08000 * 120.01971 * 179.74714 * 9 8 7 36 36 H 1.08997 * 109.47598 * 24.88210 * 14 13 11 37 37 H 1.09008 * 109.46828 * 144.88458 * 14 13 11 38 38 H 1.09003 * 109.47284 * 264.87725 * 14 13 11 39 39 H 0.96995 * 119.99707 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.11076 * 359.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 3.4640 -0.8239 1.1921 6 6 4.0804 -1.4434 2.2330 7 6 3.3280 -1.9372 3.2906 8 6 3.9487 -2.5735 4.3497 9 6 5.3214 -2.7122 4.3683 10 6 6.0870 -2.2139 3.3122 11 6 7.5570 -2.3608 3.3281 12 8 8.2607 -1.4842 2.8647 13 7 8.1180 -3.4665 3.8564 14 6 7.2717 -4.5779 4.2977 15 6 9.4785 -3.5512 3.9805 16 1 10.1171 -2.9720 3.3301 17 6 10.0383 -4.3829 4.9441 18 7 9.2761 -4.9262 5.8657 19 14 11.8742 -4.7274 4.9278 20 1 12.5757 -3.7121 5.7538 21 1 12.1288 -6.0803 5.4847 22 1 12.3774 -4.6639 3.5321 23 6 5.4582 -1.5763 2.2412 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.7516 -0.1584 2.1370 32 1 1.6052 -1.7198 1.2951 33 1 2.2536 -1.8274 3.2839 34 1 3.3576 -2.9593 5.1671 35 1 5.8033 -3.2061 5.1991 36 1 6.3278 -4.5544 3.7531 37 1 7.7805 -5.5219 4.1023 38 1 7.0771 -4.4845 5.3662 39 1 9.6667 -5.5060 6.5381 40 1 6.0448 -1.1888 1.4214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357534817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:07 Heat of formation + Delta-G solvation = -46.014500 kcal Electronic energy + Delta-G solvation = -21128.917972 eV Core-core repulsion = 17909.304292 eV Total energy + Delta-G solvation = -3219.613680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.06062 -38.71224 -36.91663 -35.25164 -34.72821 -31.79301 -30.65043 -29.64545 -27.40676 -26.69565 -26.26720 -24.88920 -22.68015 -21.92430 -20.46167 -19.48363 -17.62888 -16.90169 -16.30885 -15.97545 -15.80232 -15.31129 -14.61653 -14.50847 -14.23903 -14.00320 -13.64514 -13.40451 -13.15837 -12.78724 -12.54818 -12.48791 -12.24728 -11.87431 -11.72416 -11.39614 -11.32620 -11.23307 -11.09986 -10.99398 -10.78335 -10.61007 -10.52255 -10.34732 -10.29799 -9.06660 -8.66065 -8.39341 -7.86508 -7.69388 -6.36680 -3.92191 1.43263 1.79059 3.15617 3.22066 3.23742 3.30241 3.73790 4.11467 4.38927 4.53886 4.59377 4.80300 4.89391 5.04551 5.11383 5.15414 5.20307 5.25548 5.33425 5.42502 5.59032 5.60900 5.66911 5.71615 5.79080 5.82555 5.94423 6.05743 6.11921 6.31903 6.36955 6.55406 6.72969 6.84785 6.93220 7.00430 7.19935 7.51949 7.64127 8.10968 8.45391 9.13886 9.35870 9.94501 10.66102 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042388 B = 0.003448 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.398592 B = 8117.882275 C = 8587.644936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.148 4.148 4 C 0.064 3.936 5 O -0.314 6.314 6 C 0.116 3.884 7 C -0.207 4.207 8 C -0.092 4.092 9 C -0.133 4.133 10 C -0.056 4.056 11 C 0.477 3.523 12 O -0.585 6.585 13 N -0.431 5.431 14 C 0.105 3.895 15 C -0.305 4.305 16 H 0.101 0.899 17 C 0.032 3.968 18 N -0.878 5.878 19 Si 0.930 3.070 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.269 1.269 23 C -0.111 4.111 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.139 0.861 36 H 0.037 0.963 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.269 0.731 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.337 3.723 -5.576 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.011 4.011 5 O -0.229 6.229 6 C 0.072 3.928 7 C -0.227 4.227 8 C -0.110 4.110 9 C -0.152 4.152 10 C -0.060 4.060 11 C 0.266 3.734 12 O -0.471 6.471 13 N -0.148 5.148 14 C -0.038 4.038 15 C -0.433 4.433 16 H 0.119 0.881 17 C -0.172 4.172 18 N -0.517 5.517 19 Si 0.756 3.244 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.131 4.131 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.157 0.843 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.846 4.056 -5.798 18.272 hybrid contribution 0.545 -0.437 0.431 0.821 sum -16.302 3.619 -5.367 17.540 Atomic orbital electron populations 1.21778 0.94003 1.02104 1.02372 1.21123 0.95598 0.97083 0.97617 1.21822 1.02278 0.94870 1.01512 1.22837 0.79357 1.00080 0.98855 1.86045 1.21032 1.73959 1.41830 1.18780 0.91973 0.94637 0.87425 1.21198 0.99490 1.05763 0.96210 1.20824 0.94500 0.98141 0.97505 1.21680 0.93554 1.00557 0.99368 1.20133 0.94933 0.96843 0.94049 1.17955 0.86071 0.83415 0.85934 1.90611 1.62970 1.41933 1.51566 1.43451 1.06763 1.12516 1.52069 1.21832 0.92026 0.90555 0.99424 1.19690 0.80892 1.26216 1.16508 0.88145 1.25418 1.00474 0.97037 0.94270 1.69946 1.36059 1.31457 1.14200 0.85871 0.82015 0.77633 0.78861 1.20186 1.20769 1.19305 1.20433 0.90852 1.01883 0.99884 0.92387 0.91832 0.92399 0.90075 0.91590 0.92638 0.92773 0.92216 0.92256 0.86045 0.85840 0.84344 0.94458 0.91976 0.91472 0.92062 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 2 C -0.10 -0.85 3.16 -90.63 -0.29 -1.13 16 3 C -0.15 -1.34 9.09 37.16 0.34 -1.00 16 4 C 0.06 0.68 4.12 37.16 0.15 0.83 16 5 O -0.31 -4.64 9.67 -19.48 -0.19 -4.83 16 6 C 0.12 1.92 6.68 -39.28 -0.26 1.66 16 7 C -0.21 -2.99 9.04 -39.34 -0.36 -3.34 16 8 C -0.09 -1.37 10.03 -39.66 -0.40 -1.76 16 9 C -0.13 -2.43 7.59 -39.15 -0.30 -2.73 16 10 C -0.06 -1.19 5.16 -104.99 -0.54 -1.73 16 11 C 0.48 12.44 7.31 -12.38 -0.09 12.35 16 12 O -0.59 -17.17 16.53 5.28 0.09 -17.09 16 13 N -0.43 -11.38 3.01 -123.31 -0.37 -11.75 16 14 C 0.11 2.38 7.09 59.85 0.42 2.80 16 15 C -0.31 -8.61 9.27 -15.00 -0.14 -8.75 16 16 H 0.10 2.96 7.40 -52.49 -0.39 2.57 16 17 C 0.03 0.84 5.15 -17.45 -0.09 0.75 16 18 N -0.88 -23.11 10.69 55.50 0.59 -22.51 16 19 Si 0.93 20.69 29.57 -169.99 -5.03 15.67 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 C -0.11 -2.16 9.55 -39.00 -0.37 -2.54 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.59 7.65 -51.93 -0.40 0.19 16 32 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 33 H 0.12 1.37 6.28 -52.49 -0.33 1.04 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.14 2.58 5.53 -52.49 -0.29 2.29 16 36 H 0.04 0.74 5.74 -51.93 -0.30 0.44 16 37 H 0.06 1.46 7.41 -51.92 -0.38 1.07 16 38 H 0.07 1.54 6.23 -51.93 -0.32 1.22 16 39 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 40 H 0.13 2.69 8.00 -52.49 -0.42 2.27 16 LS Contribution 328.13 15.07 4.94 4.94 Total: -1.00 -31.37 328.13 -7.26 -38.63 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.73 Total: 2.14 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.58 Total: -5.20 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.22 Total: -34.26 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.10 Total: -21.92 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.37 -7.26 -38.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357534817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.384 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds