Wall clock time and date at job start Mon Mar 30 2020 02:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47227 * 2 1 4 4 C 1.52995 * 109.46944 * 120.00093 * 2 1 3 5 5 O 1.42896 * 109.47465 * 175.00029 * 4 2 1 6 6 C 1.35917 * 117.00499 * 180.02562 * 5 4 2 7 7 C 1.38867 * 119.97550 * 359.72863 * 6 5 4 8 8 C 1.38268 * 120.24529 * 179.72293 * 7 6 5 9 9 C 1.37984 * 120.21379 * 0.55002 * 8 7 6 10 10 C 1.39637 * 119.95778 * 359.72457 * 9 8 7 11 11 C 1.47736 * 120.12364 * 180.02562 * 10 9 8 12 12 O 1.21593 * 120.00153 * 215.22388 * 11 10 9 13 13 N 1.34774 * 120.00346 * 35.22014 * 11 10 9 14 14 C 1.46501 * 119.99566 * 5.84797 * 13 11 10 15 15 C 1.36873 * 120.00321 * 185.84645 * 13 11 10 16 16 H 1.07996 * 120.00163 * 335.03121 * 15 13 11 17 17 C 1.39055 * 119.99846 * 155.02975 * 15 13 11 18 18 N 1.31360 * 119.99986 * 349.51694 * 17 15 13 19 19 Si 1.86797 * 119.99658 * 169.51627 * 17 15 13 20 20 H 1.48497 * 109.47300 * 90.00132 * 19 17 15 21 21 H 1.48501 * 109.46966 * 210.00004 * 19 17 15 22 22 H 1.48502 * 109.47437 * 329.99641 * 19 17 15 23 23 C 1.38426 * 119.97895 * 180.02562 * 6 5 4 24 24 H 1.08998 * 109.47432 * 299.99775 * 1 2 3 25 25 H 1.09003 * 109.47261 * 59.99862 * 1 2 3 26 26 H 1.08996 * 109.47320 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47263 * 239.99958 * 2 1 3 28 28 H 1.09002 * 109.47221 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47271 * 299.99895 * 3 2 1 30 30 H 1.09005 * 109.47072 * 60.00370 * 3 2 1 31 31 H 1.08999 * 109.47411 * 294.99988 * 4 2 1 32 32 H 1.09001 * 109.47142 * 54.99865 * 4 2 1 33 33 H 1.07998 * 119.87969 * 359.97438 * 7 6 5 34 34 H 1.08001 * 119.89419 * 180.27187 * 8 7 6 35 35 H 1.08000 * 120.01971 * 179.74714 * 9 8 7 36 36 H 1.08997 * 109.47598 * 24.88210 * 14 13 11 37 37 H 1.09008 * 109.46828 * 144.88458 * 14 13 11 38 38 H 1.09003 * 109.47284 * 264.87725 * 14 13 11 39 39 H 0.96995 * 119.99707 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.11076 * 359.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 3.4640 -0.8239 1.1921 6 6 4.0804 -1.4434 2.2330 7 6 3.3280 -1.9372 3.2906 8 6 3.9487 -2.5735 4.3497 9 6 5.3214 -2.7122 4.3683 10 6 6.0870 -2.2139 3.3122 11 6 7.5570 -2.3608 3.3281 12 8 8.2607 -1.4842 2.8647 13 7 8.1180 -3.4665 3.8564 14 6 7.2717 -4.5779 4.2977 15 6 9.4785 -3.5512 3.9805 16 1 10.1171 -2.9720 3.3301 17 6 10.0383 -4.3829 4.9441 18 7 9.2761 -4.9262 5.8657 19 14 11.8742 -4.7274 4.9278 20 1 12.5757 -3.7121 5.7538 21 1 12.1288 -6.0803 5.4847 22 1 12.3774 -4.6639 3.5321 23 6 5.4582 -1.5763 2.2412 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.7516 -0.1584 2.1370 32 1 1.6052 -1.7198 1.2951 33 1 2.2536 -1.8274 3.2839 34 1 3.3576 -2.9593 5.1671 35 1 5.8033 -3.2061 5.1991 36 1 6.3278 -4.5544 3.7531 37 1 7.7805 -5.5219 4.1023 38 1 7.0771 -4.4845 5.3662 39 1 9.6667 -5.5060 6.5381 40 1 6.0448 -1.1888 1.4214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357534817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:06 Heat of formation + Delta-G solvation = -64.671152 kcal Electronic energy + Delta-G solvation = -21129.726985 eV Core-core repulsion = 17909.304292 eV Total energy + Delta-G solvation = -3220.422693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.42276 -40.34335 -38.27034 -36.79231 -36.10837 -33.79307 -32.07288 -31.04439 -28.21990 -28.04340 -27.57151 -26.73901 -24.21805 -23.25992 -21.47010 -20.84946 -19.23179 -18.82972 -17.62530 -17.31223 -17.07322 -16.78844 -16.37956 -15.95048 -15.76465 -15.25125 -14.87402 -14.78171 -14.43748 -14.08229 -13.96897 -13.56285 -13.53943 -13.27062 -13.08973 -12.95906 -12.79138 -12.49236 -12.40810 -12.23700 -12.11087 -12.03046 -11.98166 -11.54166 -11.48069 -11.07243 -10.56246 -9.96306 -9.73342 -9.17498 -8.39648 -6.06283 -0.00329 0.44977 1.37727 1.39774 1.52852 1.98300 2.14330 2.29725 2.78635 3.03160 3.09582 3.77099 3.85132 3.88287 3.95546 4.14035 4.14709 4.29383 4.31784 4.48819 4.56455 4.57692 4.65561 4.70362 4.81835 4.93305 4.97932 4.99914 5.03586 5.21107 5.24533 5.29157 5.38141 5.40026 5.40964 5.42085 5.51212 5.72991 6.04416 6.42214 6.47847 7.07321 7.33556 7.91953 8.61886 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042388 B = 0.003448 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.398592 B = 8117.882275 C = 8587.644936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C -0.148 4.148 4 C 0.053 3.947 5 O -0.330 6.330 6 C 0.123 3.877 7 C -0.185 4.185 8 C -0.072 4.072 9 C -0.140 4.140 10 C -0.083 4.083 11 C 0.465 3.535 12 O -0.637 6.637 13 N -0.444 5.444 14 C 0.119 3.881 15 C -0.352 4.352 16 H 0.071 0.929 17 C 0.003 3.997 18 N -0.887 5.887 19 Si 0.995 3.005 20 H -0.274 1.274 21 H -0.262 1.262 22 H -0.272 1.272 23 C -0.133 4.133 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.132 0.868 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.278 0.722 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.618 2.925 -4.581 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.022 4.022 5 O -0.244 6.244 6 C 0.078 3.922 7 C -0.204 4.204 8 C -0.090 4.090 9 C -0.159 4.159 10 C -0.086 4.086 11 C 0.255 3.745 12 O -0.526 6.526 13 N -0.160 5.160 14 C -0.023 4.023 15 C -0.480 4.480 16 H 0.089 0.911 17 C -0.200 4.200 18 N -0.525 5.525 19 Si 0.817 3.183 20 H -0.199 1.199 21 H -0.186 1.186 22 H -0.197 1.197 23 C -0.153 4.153 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.184 0.816 34 H 0.187 0.813 35 H 0.150 0.850 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.172 3.231 -4.789 20.983 hybrid contribution 1.395 -0.118 0.080 1.402 sum -18.777 3.113 -4.709 19.607 Atomic orbital electron populations 1.21748 0.91738 1.02973 1.03230 1.21166 0.97290 0.96324 0.96585 1.21830 1.00599 0.95630 1.02519 1.23250 0.76890 1.01665 1.00361 1.86059 1.23670 1.73407 1.41291 1.18732 0.90866 0.94121 0.88473 1.21675 1.01480 1.02969 0.94291 1.21262 0.92909 0.96329 0.98507 1.21658 0.95145 1.00910 0.98144 1.19747 0.92130 1.00219 0.96545 1.18805 0.88343 0.82622 0.84695 1.90540 1.64956 1.43587 1.53557 1.43680 1.06702 1.13497 1.52115 1.21780 0.92375 0.88667 0.99519 1.19646 0.82014 1.28270 1.18084 0.91100 1.26183 1.04807 0.95815 0.93195 1.69991 1.37660 1.30868 1.13958 0.84931 0.76485 0.78236 0.78635 1.19925 1.18593 1.19664 1.20284 0.92683 1.03098 0.99283 0.91538 0.91039 0.91520 0.90912 0.94198 0.91377 0.92105 0.90699 0.90377 0.81559 0.81300 0.85012 0.91691 0.93295 0.91670 0.91196 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.19 71.98 0.66 -0.69 16 2 C -0.10 -1.46 3.16 -10.80 -0.03 -1.49 16 3 C -0.15 -2.48 9.09 71.98 0.65 -1.83 16 4 C 0.05 0.94 4.12 71.98 0.30 1.24 16 5 O -0.33 -9.26 9.67 -92.62 -0.90 -10.15 16 6 C 0.12 3.87 6.68 22.47 0.15 4.02 16 7 C -0.19 -4.51 9.04 22.43 0.20 -4.31 16 8 C -0.07 -1.86 10.03 22.22 0.22 -1.63 16 9 C -0.14 -4.95 7.59 22.55 0.17 -4.78 16 10 C -0.08 -3.66 5.16 -20.10 -0.10 -3.76 16 11 C 0.46 25.79 7.31 86.75 0.63 26.43 16 12 O -0.64 -40.48 16.53 -4.01 -0.07 -40.54 16 13 N -0.44 -24.62 3.01 -662.30 -1.99 -26.62 16 14 C 0.12 5.50 7.09 127.77 0.91 6.41 16 15 C -0.35 -20.95 9.27 84.10 0.78 -20.17 16 16 H 0.07 4.51 7.40 -2.91 -0.02 4.49 16 17 C 0.00 0.17 5.15 84.96 0.44 0.60 16 18 N -0.89 -46.80 10.69 21.68 0.23 -46.56 16 19 Si 0.99 42.92 29.57 68.60 2.03 44.95 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 C -0.13 -5.40 9.55 22.64 0.22 -5.19 16 24 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.04 0.86 7.82 -2.39 -0.02 0.84 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.07 1.14 7.65 -2.39 -0.02 1.12 16 32 H 0.08 1.13 7.67 -2.39 -0.02 1.11 16 33 H 0.17 2.62 6.28 -2.91 -0.02 2.60 16 34 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 35 H 0.13 4.82 5.53 -2.91 -0.02 4.80 16 36 H 0.06 2.59 5.74 -2.39 -0.01 2.57 16 37 H 0.05 2.34 7.41 -2.38 -0.02 2.32 16 38 H 0.06 3.01 6.23 -2.39 -0.01 2.99 16 39 H 0.28 13.55 8.31 -92.71 -0.77 12.77 16 40 H 0.11 4.79 8.00 -2.91 -0.02 4.77 16 Total: -1.00 -73.41 328.13 5.53 -67.88 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.03 Total: 16.20 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 5.19 Total: -5.15 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -1.76 Total: -73.18 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.96 Total: -50.70 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -73.41 5.53 -67.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357534817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.210 kcal (2) G-P(sol) polarization free energy of solvation -73.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds