Wall clock time and date at job start Mon Mar 30 2020 02:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47087 * 2 1 4 4 C 1.52997 * 109.47333 * 239.99516 * 2 1 3 5 5 O 1.42901 * 109.46730 * 119.99701 * 2 1 3 6 6 C 1.42905 * 114.00134 * 60.00260 * 5 2 1 7 7 C 1.50703 * 109.47264 * 179.97438 * 6 5 2 8 8 C 1.37954 * 120.07672 * 359.97438 * 7 6 5 9 9 C 1.38357 * 120.15062 * 179.97438 * 8 7 6 10 10 C 1.38395 * 120.30501 * 0.02725 * 9 8 7 11 11 C 1.37916 * 120.15103 * 359.97420 * 10 9 8 12 12 C 1.39619 * 120.07465 * 179.72588 * 7 6 5 13 13 C 1.47726 * 120.15352 * 359.97438 * 12 7 6 14 14 O 1.21599 * 119.99777 * 0.02562 * 13 12 7 15 15 N 1.34775 * 120.00415 * 180.02562 * 13 12 7 16 16 C 1.36871 * 120.00430 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99459 * 359.97438 * 16 15 13 18 18 C 1.39052 * 120.00019 * 180.02562 * 16 15 13 19 19 N 1.31361 * 119.99728 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00128 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46789 * 90.00538 * 20 18 16 22 22 H 1.48495 * 109.47220 * 210.00567 * 20 18 16 23 23 H 1.48499 * 109.46919 * 330.00844 * 20 18 16 24 24 H 1.08994 * 109.47484 * 300.00423 * 1 2 3 25 25 H 1.09004 * 109.46784 * 60.00226 * 1 2 3 26 26 H 1.09004 * 109.47235 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47090 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47307 * 299.99840 * 3 2 1 29 29 H 1.09002 * 109.47184 * 59.99749 * 3 2 1 30 30 H 1.08994 * 109.47529 * 300.00534 * 4 2 1 31 31 H 1.09004 * 109.46975 * 60.00375 * 4 2 1 32 32 H 1.09002 * 109.47295 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47103 * 300.00246 * 6 5 2 34 34 H 1.09004 * 109.47054 * 59.99750 * 6 5 2 35 35 H 1.08006 * 119.92375 * 359.97438 * 8 7 6 36 36 H 1.08001 * 119.84481 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.92126 * 179.97438 * 10 9 8 38 38 H 1.08005 * 120.07577 * 180.02562 * 11 10 9 39 39 H 0.97009 * 119.99684 * 0.02562 * 15 13 12 40 40 H 0.96998 * 120.00153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0063 -0.6736 1.1668 6 6 1.5846 -2.0355 1.2646 7 6 2.1419 -2.6447 2.5254 8 6 2.9277 -1.8882 3.3700 9 6 3.4397 -2.4458 4.5281 10 6 3.1683 -3.7648 4.8473 11 6 2.3842 -4.5325 4.0119 12 6 1.8598 -3.9745 2.8439 13 6 1.0141 -4.7889 1.9473 14 8 0.5623 -4.3016 0.9290 15 7 0.7433 -6.0721 2.2580 16 6 -0.0398 -6.8269 1.4270 17 1 -0.4410 -6.3940 0.5226 18 6 -0.3196 -8.1506 1.7479 19 7 -1.0716 -8.8748 0.9506 20 14 0.3739 -8.8991 3.3126 21 1 -0.5822 -8.6865 4.4289 22 1 0.5860 -10.3552 3.1130 23 1 1.6690 -8.2504 3.6398 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6768 -0.2075 -2.1392 32 1 3.1301 -0.7217 -1.2489 33 1 0.4957 -2.0778 1.2907 34 1 1.9491 -2.5916 0.4009 35 1 3.1437 -0.8583 3.1266 36 1 4.0546 -1.8491 5.1856 37 1 3.5715 -4.1938 5.7527 38 1 2.1729 -5.5616 4.2624 39 1 1.1035 -6.4608 3.0705 40 1 -1.2665 -9.7983 1.1742 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358399701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:53 Heat of formation + Delta-G solvation = -62.404817 kcal Electronic energy + Delta-G solvation = -21682.383013 eV Core-core repulsion = 18462.058595 eV Total energy + Delta-G solvation = -3220.324418 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.77319 -38.55668 -37.42288 -34.33208 -33.51565 -31.97281 -31.04958 -30.53043 -27.61494 -27.27353 -25.99176 -24.80542 -22.87823 -21.14715 -19.87437 -19.33830 -18.65736 -16.72792 -16.31607 -15.64402 -15.23239 -15.17478 -14.63484 -14.26897 -14.14929 -14.12659 -13.45706 -13.43953 -13.15836 -12.75773 -12.48964 -12.24730 -12.23205 -12.16572 -11.82667 -11.65711 -11.64016 -11.30582 -11.24363 -11.10689 -10.78100 -10.67548 -10.33736 -10.07704 -9.73543 -9.38731 -8.59725 -8.53224 -8.39432 -8.22703 -6.47640 -3.91720 1.31013 1.65534 2.95625 2.99808 3.07551 3.60890 3.81335 3.98063 4.35680 4.53933 4.91158 4.93147 5.09548 5.14546 5.19668 5.22123 5.23325 5.52850 5.57129 5.63135 5.69157 5.77028 5.79426 5.88188 5.90711 5.91965 6.05703 6.08614 6.12294 6.18229 6.32086 6.41344 6.45942 6.62914 6.72225 6.83996 7.20602 7.43379 7.58830 8.02202 8.45602 8.80135 9.27620 9.71471 10.64183 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.005192 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.410681 B = 5391.657915 C = 6653.698075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.112 3.888 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.388 6.388 6 C 0.108 3.892 7 C -0.042 4.042 8 C -0.107 4.107 9 C -0.120 4.120 10 C -0.128 4.128 11 C -0.108 4.108 12 C -0.098 4.098 13 C 0.475 3.525 14 O -0.578 6.578 15 N -0.569 5.569 16 C -0.300 4.300 17 H 0.124 0.876 18 C 0.044 3.956 19 N -0.867 5.867 20 Si 0.876 3.124 21 H -0.267 1.267 22 H -0.272 1.272 23 H -0.267 1.267 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.372 0.628 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 14.312 4.389 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.073 3.927 3 C -0.192 4.192 4 C -0.239 4.239 5 O -0.308 6.308 6 C 0.033 3.967 7 C -0.043 4.043 8 C -0.125 4.125 9 C -0.139 4.139 10 C -0.146 4.146 11 C -0.127 4.127 12 C -0.102 4.102 13 C 0.264 3.736 14 O -0.464 6.464 15 N -0.206 5.206 16 C -0.428 4.428 17 H 0.142 0.858 18 C -0.161 4.161 19 N -0.505 5.505 20 Si 0.702 3.298 21 H -0.192 1.192 22 H -0.197 1.197 23 H -0.193 1.193 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.206 0.794 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.487 14.454 3.770 16.709 hybrid contribution 0.296 -1.104 1.081 1.573 sum 7.783 13.350 4.852 16.197 Atomic orbital electron populations 1.22451 0.95851 1.03400 1.02164 1.21358 0.93132 0.92621 0.85595 1.21746 1.01655 0.93765 1.02083 1.22449 1.01829 1.01998 0.97587 1.87796 1.74931 1.25121 1.42965 1.21400 0.99413 0.80633 0.95263 1.19719 0.96554 0.92307 0.95745 1.20925 0.97342 1.00325 0.93895 1.21185 1.00222 0.95261 0.97211 1.20994 0.99449 0.94488 0.99639 1.21258 0.97725 0.99632 0.94116 1.20089 0.99891 0.94139 0.96058 1.17602 0.86035 0.82451 0.87528 1.90596 1.56671 1.71412 1.27736 1.42199 1.45308 1.10593 1.22467 1.19528 1.24690 0.93079 1.05552 0.85821 1.25109 0.96855 0.96063 0.98075 1.69592 1.35255 1.09178 1.36510 0.86706 0.79580 0.80129 0.83382 1.19187 1.19732 1.19265 0.92036 0.91918 0.91238 0.92058 0.91459 0.92058 0.91250 0.91909 0.92041 0.90236 0.90306 0.84987 0.86285 0.86154 0.86190 0.79383 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 8.25 37.16 0.31 -2.02 16 2 C 0.11 1.47 1.14 -90.62 -0.10 1.36 16 3 C -0.14 -1.40 8.84 37.16 0.33 -1.07 16 4 C -0.18 -2.32 8.25 37.16 0.31 -2.01 16 5 O -0.39 -6.05 8.47 -35.23 -0.30 -6.35 16 6 C 0.11 1.95 3.78 36.01 0.14 2.08 16 7 C -0.04 -0.76 5.92 -104.21 -0.62 -1.37 16 8 C -0.11 -1.64 9.37 -39.64 -0.37 -2.01 16 9 C -0.12 -1.62 10.04 -39.48 -0.40 -2.01 16 10 C -0.13 -1.78 10.03 -39.64 -0.40 -2.18 16 11 C -0.11 -1.81 9.54 -39.17 -0.37 -2.18 16 12 C -0.10 -1.93 5.87 -104.97 -0.62 -2.55 16 13 C 0.47 11.25 7.70 -12.38 -0.10 11.15 16 14 O -0.58 -15.12 12.98 5.28 0.07 -15.05 16 15 N -0.57 -13.80 5.03 -11.87 -0.06 -13.86 16 16 C -0.30 -8.34 10.16 -15.00 -0.15 -8.49 16 17 H 0.12 3.88 7.38 -52.49 -0.39 3.50 16 18 C 0.04 1.18 5.50 -17.45 -0.10 1.08 16 19 N -0.87 -24.58 13.95 55.50 0.77 -23.81 16 20 Si 0.88 18.96 27.74 -169.99 -4.71 14.25 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.04 6.54 -51.93 -0.34 0.70 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.03 6.54 -51.93 -0.34 0.69 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.56 5.60 -51.93 -0.29 1.27 16 34 H 0.08 1.54 5.64 -51.93 -0.29 1.25 16 35 H 0.13 1.87 7.00 -52.48 -0.37 1.50 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.89 6.41 -52.48 -0.34 1.56 16 39 H 0.37 8.02 3.79 -40.82 -0.15 7.87 16 40 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -30.18 323.62 -6.98 -37.15 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -5.48 Total: 13.00 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.14 Total: -10.22 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.71 Total: -37.67 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.23 Total: -21.39 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.18 -6.98 -37.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358399701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.253 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds