Wall clock time and date at job start Mon Mar 30 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47087 * 2 1 4 4 C 1.52997 * 109.47333 * 239.99516 * 2 1 3 5 5 O 1.42901 * 109.46730 * 119.99701 * 2 1 3 6 6 C 1.42905 * 114.00134 * 60.00260 * 5 2 1 7 7 C 1.50703 * 109.47264 * 179.97438 * 6 5 2 8 8 C 1.37954 * 120.07672 * 359.97438 * 7 6 5 9 9 C 1.38357 * 120.15062 * 179.97438 * 8 7 6 10 10 C 1.38395 * 120.30501 * 0.02725 * 9 8 7 11 11 C 1.37916 * 120.15103 * 359.97420 * 10 9 8 12 12 C 1.39619 * 120.07465 * 179.72588 * 7 6 5 13 13 C 1.47726 * 120.15352 * 359.97438 * 12 7 6 14 14 O 1.21599 * 119.99777 * 0.02562 * 13 12 7 15 15 N 1.34775 * 120.00415 * 180.02562 * 13 12 7 16 16 C 1.36871 * 120.00430 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99459 * 359.97438 * 16 15 13 18 18 C 1.39052 * 120.00019 * 180.02562 * 16 15 13 19 19 N 1.31361 * 119.99728 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00128 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46789 * 90.00538 * 20 18 16 22 22 H 1.48495 * 109.47220 * 210.00567 * 20 18 16 23 23 H 1.48499 * 109.46919 * 330.00844 * 20 18 16 24 24 H 1.08994 * 109.47484 * 300.00423 * 1 2 3 25 25 H 1.09004 * 109.46784 * 60.00226 * 1 2 3 26 26 H 1.09004 * 109.47235 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47090 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47307 * 299.99840 * 3 2 1 29 29 H 1.09002 * 109.47184 * 59.99749 * 3 2 1 30 30 H 1.08994 * 109.47529 * 300.00534 * 4 2 1 31 31 H 1.09004 * 109.46975 * 60.00375 * 4 2 1 32 32 H 1.09002 * 109.47295 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47103 * 300.00246 * 6 5 2 34 34 H 1.09004 * 109.47054 * 59.99750 * 6 5 2 35 35 H 1.08006 * 119.92375 * 359.97438 * 8 7 6 36 36 H 1.08001 * 119.84481 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.92126 * 179.97438 * 10 9 8 38 38 H 1.08005 * 120.07577 * 180.02562 * 11 10 9 39 39 H 0.97009 * 119.99684 * 0.02562 * 15 13 12 40 40 H 0.96998 * 120.00153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0063 -0.6736 1.1668 6 6 1.5846 -2.0355 1.2646 7 6 2.1419 -2.6447 2.5254 8 6 2.9277 -1.8882 3.3700 9 6 3.4397 -2.4458 4.5281 10 6 3.1683 -3.7648 4.8473 11 6 2.3842 -4.5325 4.0119 12 6 1.8598 -3.9745 2.8439 13 6 1.0141 -4.7889 1.9473 14 8 0.5623 -4.3016 0.9290 15 7 0.7433 -6.0721 2.2580 16 6 -0.0398 -6.8269 1.4270 17 1 -0.4410 -6.3940 0.5226 18 6 -0.3196 -8.1506 1.7479 19 7 -1.0716 -8.8748 0.9506 20 14 0.3739 -8.8991 3.3126 21 1 -0.5822 -8.6865 4.4289 22 1 0.5860 -10.3552 3.1130 23 1 1.6690 -8.2504 3.6398 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6768 -0.2075 -2.1392 32 1 3.1301 -0.7217 -1.2489 33 1 0.4957 -2.0778 1.2907 34 1 1.9491 -2.5916 0.4009 35 1 3.1437 -0.8583 3.1266 36 1 4.0546 -1.8491 5.1856 37 1 3.5715 -4.1938 5.7527 38 1 2.1729 -5.5616 4.2624 39 1 1.1035 -6.4608 3.0705 40 1 -1.2665 -9.7983 1.1742 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358399701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:52 Heat of formation + Delta-G solvation = -81.718995 kcal Electronic energy + Delta-G solvation = -21683.220538 eV Core-core repulsion = 18462.058595 eV Total energy + Delta-G solvation = -3221.161943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.27110 -39.89331 -38.96327 -36.26190 -34.75699 -33.93348 -32.36055 -31.90338 -28.65362 -28.35602 -27.55446 -26.40968 -24.33786 -22.48228 -21.53127 -20.67214 -20.44761 -18.33835 -17.50906 -17.19892 -16.77148 -16.58376 -16.07556 -15.64428 -15.59828 -15.44278 -15.13226 -14.89603 -14.47008 -14.29498 -14.08708 -13.67087 -13.53381 -13.05402 -13.03323 -12.89542 -12.77876 -12.65616 -12.52794 -12.46942 -12.25119 -12.04322 -11.93580 -11.61939 -11.50192 -10.64801 -10.40939 -10.35744 -9.88329 -9.61359 -8.51214 -6.08398 -0.03973 0.42046 1.24414 1.31507 1.38604 2.02150 2.15422 2.59813 2.78615 2.83082 3.19651 3.80477 3.90783 3.94761 3.95843 4.01935 4.11280 4.23577 4.45551 4.53755 4.55464 4.58320 4.60756 4.71060 4.79887 4.87946 4.89846 4.92516 4.94374 5.08396 5.17329 5.31169 5.38351 5.40947 5.43376 5.53118 5.60351 5.86510 6.02346 6.31235 6.47900 6.75244 7.25806 7.80741 8.65479 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.005192 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.410681 B = 5391.657915 C = 6653.698075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.099 3.901 3 C -0.128 4.128 4 C -0.178 4.178 5 O -0.385 6.385 6 C 0.124 3.876 7 C -0.060 4.060 8 C -0.108 4.108 9 C -0.095 4.095 10 C -0.116 4.116 11 C -0.108 4.108 12 C -0.133 4.133 13 C 0.476 3.524 14 O -0.615 6.615 15 N -0.573 5.573 16 C -0.330 4.330 17 H 0.062 0.938 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.955 3.045 21 H -0.252 1.252 22 H -0.266 1.266 23 H -0.235 1.235 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.146 0.854 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.130 0.870 39 H 0.388 0.612 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.834 16.060 8.212 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.061 3.939 3 C -0.185 4.185 4 C -0.236 4.236 5 O -0.306 6.306 6 C 0.048 3.952 7 C -0.062 4.062 8 C -0.126 4.126 9 C -0.113 4.113 10 C -0.134 4.134 11 C -0.127 4.127 12 C -0.136 4.136 13 C 0.267 3.733 14 O -0.502 6.502 15 N -0.212 5.212 16 C -0.459 4.459 17 H 0.080 0.920 18 C -0.208 4.208 19 N -0.560 5.560 20 Si 0.774 3.226 21 H -0.176 1.176 22 H -0.191 1.191 23 H -0.158 1.158 24 H 0.084 0.916 25 H 0.104 0.896 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.164 0.836 36 H 0.184 0.816 37 H 0.183 0.817 38 H 0.148 0.852 39 H 0.225 0.775 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.517 16.233 7.598 20.781 hybrid contribution -0.590 -1.400 -0.159 1.527 sum 9.927 14.833 7.439 19.337 Atomic orbital electron populations 1.22431 0.96008 1.01568 1.03558 1.21731 0.93258 0.94225 0.84708 1.21735 1.01980 0.91222 1.03528 1.22429 1.02067 1.00291 0.98771 1.87776 1.74891 1.23608 1.44295 1.20941 0.97600 0.81811 0.94863 1.19865 0.97736 0.92292 0.96297 1.21150 0.96567 1.00706 0.94137 1.21748 0.98157 0.95348 0.96046 1.21482 0.97525 0.94298 1.00085 1.21483 0.97569 1.00538 0.93113 1.19822 1.01908 0.94505 0.97384 1.18531 0.84999 0.82428 0.87364 1.90577 1.57739 1.72243 1.29652 1.41941 1.45832 1.10607 1.22807 1.19066 1.27226 0.94475 1.05156 0.92004 1.26110 0.96571 0.95669 1.02456 1.69753 1.37062 1.09892 1.39289 0.85509 0.80291 0.79100 0.77677 1.17604 1.19065 1.15810 0.91559 0.89566 0.94660 0.91506 0.89145 0.91514 0.94661 0.89559 0.91555 0.93129 0.93180 0.83619 0.81643 0.81711 0.85192 0.77536 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.71 8.25 71.98 0.59 -4.12 16 2 C 0.10 2.59 1.14 -10.79 -0.01 2.58 16 3 C -0.13 -2.34 8.84 71.98 0.64 -1.71 16 4 C -0.18 -4.70 8.25 71.98 0.59 -4.11 16 5 O -0.39 -12.13 8.47 -148.98 -1.26 -13.39 16 6 C 0.12 4.75 3.78 71.24 0.27 5.02 16 7 C -0.06 -2.20 5.92 -19.60 -0.12 -2.31 16 8 C -0.11 -2.98 9.37 22.23 0.21 -2.77 16 9 C -0.09 -2.01 10.04 22.34 0.22 -1.78 16 10 C -0.12 -2.58 10.03 22.23 0.22 -2.36 16 11 C -0.11 -3.30 9.54 22.54 0.22 -3.08 16 12 C -0.13 -5.24 5.87 -20.09 -0.12 -5.36 16 13 C 0.48 23.93 7.70 86.75 0.67 24.60 16 14 O -0.61 -35.34 12.98 -4.03 -0.05 -35.39 16 15 N -0.57 -28.90 5.03 -309.72 -1.56 -30.46 16 16 C -0.33 -19.74 10.16 84.10 0.85 -18.89 16 17 H 0.06 4.34 7.38 -2.91 -0.02 4.32 16 18 C -0.01 -0.43 5.50 84.96 0.47 0.04 16 19 N -0.92 -55.07 13.95 21.68 0.30 -54.77 16 20 Si 0.96 38.79 27.74 68.60 1.90 40.69 16 21 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.23 -8.19 6.52 99.48 0.65 -7.54 16 24 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.03 1.16 6.54 -2.39 -0.02 1.14 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.03 1.15 6.54 -2.39 -0.02 1.14 16 31 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 2.21 5.60 -2.39 -0.01 2.19 16 34 H 0.05 2.18 5.64 -2.38 -0.01 2.17 16 35 H 0.15 3.62 7.00 -2.91 -0.02 3.60 16 36 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.13 3.65 6.41 -2.91 -0.02 3.63 16 39 H 0.39 16.54 3.79 -92.70 -0.35 16.19 16 40 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -74.77 323.62 4.68 -70.09 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: 0.64 Total: 37.49 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 4.71 Total: -14.25 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -1.26 Total: -85.23 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -1.31 Total: -48.79 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.90 Total: 40.69 kcal Total: -74.77 4.68 -70.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358399701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.632 kcal (2) G-P(sol) polarization free energy of solvation -74.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds