Wall clock time and date at job start Mon Mar 30 2020 01:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47594 * 2 1 4 4 C 1.53000 * 109.46802 * 119.99923 * 2 1 3 5 5 H 1.09007 * 109.47072 * 299.99786 * 4 2 1 6 6 C 1.52998 * 109.47470 * 59.99615 * 4 2 1 7 7 O 1.42902 * 109.47472 * 184.99441 * 6 4 2 8 8 C 1.50704 * 109.47305 * 179.97438 * 4 2 1 9 9 O 1.21287 * 119.99565 * 359.97438 * 8 4 2 10 10 N 1.34774 * 120.00198 * 179.97438 * 8 4 2 11 11 C 1.39237 * 119.99670 * 184.25208 * 10 8 4 12 12 C 1.39484 * 119.83781 * 324.75674 * 11 10 8 13 13 C 1.36366 * 120.16619 * 180.29651 * 12 11 10 14 14 C 1.40867 * 119.83172 * 359.48570 * 13 12 11 15 15 C 1.41156 * 120.16535 * 180.24991 * 14 13 12 16 16 H 1.08003 * 120.00138 * 215.05197 * 15 14 13 17 17 C 1.39911 * 119.99925 * 35.05334 * 15 14 13 18 18 N 1.30872 * 120.00026 * 355.45524 * 17 15 14 19 19 Si 1.86799 * 119.99976 * 175.45987 * 17 15 14 20 20 H 1.48505 * 109.46982 * 59.99930 * 19 17 15 21 21 H 1.48494 * 109.47232 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47226 * 299.99963 * 19 17 15 23 23 C 1.40863 * 119.67335 * 0.51381 * 14 13 12 24 24 C 1.36379 * 119.82471 * 359.73281 * 23 14 13 25 25 H 1.08994 * 109.47599 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47132 * 300.00328 * 1 2 3 27 27 H 1.09002 * 109.47035 * 59.99924 * 1 2 3 28 28 H 1.09001 * 109.46924 * 239.99270 * 2 1 3 29 29 H 1.08999 * 109.47631 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46991 * 300.00103 * 3 2 1 31 31 H 1.09007 * 109.47149 * 59.99682 * 3 2 1 32 32 H 1.08998 * 109.47487 * 305.00171 * 6 4 2 33 33 H 1.09003 * 109.46947 * 64.99911 * 6 4 2 34 34 H 0.96700 * 114.00219 * 179.97438 * 7 6 4 35 35 H 0.96998 * 119.99935 * 4.25572 * 10 8 4 36 36 H 1.07996 * 119.90956 * 0.02562 * 12 11 10 37 37 H 1.08006 * 120.08089 * 179.69999 * 13 12 11 38 38 H 0.96999 * 119.99858 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.08755 * 179.71613 * 23 14 13 40 40 H 1.08007 * 119.91256 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2073 2.1393 6 6 1.5298 -2.1637 1.2494 7 8 1.9079 -2.8026 2.4704 8 6 3.5469 -0.7219 1.2491 9 8 4.1534 -0.1975 0.3390 10 7 4.2207 -1.3051 2.2601 11 6 5.6102 -1.2290 2.3059 12 6 6.3462 -1.2564 1.1214 13 6 7.7077 -1.1883 1.1587 14 6 8.3701 -1.0792 2.3971 15 6 9.7788 -1.0030 2.4437 16 1 10.3180 -1.4647 3.2577 17 6 10.4766 -0.3292 1.4355 18 7 9.8320 0.1533 0.4037 19 14 12.3284 -0.1184 1.5618 20 1 12.9760 -1.4537 1.6156 21 1 12.8242 0.6242 0.3754 22 1 12.6571 0.6412 2.7948 23 6 7.6201 -1.0522 3.5892 24 6 6.2593 -1.1262 3.5362 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8932 -0.5140 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.4435 -2.1650 1.1598 33 1 1.9644 -2.7028 0.4076 34 1 1.6166 -3.7221 2.5399 35 1 3.7377 -1.7779 2.9558 36 1 5.8366 -1.3361 0.1725 37 1 8.2764 -1.2145 0.2409 38 1 10.3158 0.6207 -0.2951 39 1 8.1213 -0.9733 4.5426 40 1 5.6828 -1.1060 4.4493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362348850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:52 Heat of formation + Delta-G solvation = -77.997986 kcal Electronic energy + Delta-G solvation = -21549.643727 eV Core-core repulsion = 18328.643138 eV Total energy + Delta-G solvation = -3221.000588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06395 -37.75640 -36.76897 -35.50406 -34.17065 -32.77934 -30.01308 -29.40315 -28.54610 -27.26246 -24.99914 -23.61114 -21.60523 -21.09909 -20.05226 -19.19218 -17.56297 -17.22719 -17.11053 -16.02802 -15.44106 -14.95735 -14.69046 -14.46136 -13.96466 -13.78841 -13.62238 -12.88010 -12.75733 -12.67852 -12.19951 -12.15127 -11.91848 -11.76767 -11.61131 -11.34257 -11.14049 -11.02860 -10.87676 -10.76195 -10.63504 -10.40953 -10.21261 -9.80755 -9.76240 -9.28574 -8.87014 -8.53320 -7.44613 -6.78033 -6.52962 -4.26340 2.65870 3.07249 3.13390 3.15433 3.17573 3.42932 3.78935 4.02260 4.05894 4.74804 4.79965 4.87118 4.95507 5.11056 5.22212 5.26719 5.55254 5.61115 5.66058 5.74055 5.77034 5.88863 5.95057 6.13338 6.23134 6.36528 6.46604 6.64415 6.97120 7.10191 7.13071 7.29180 7.39082 7.41249 7.71509 7.79314 8.08597 8.16002 8.32770 8.46074 8.74249 8.93801 9.00065 9.11634 10.38169 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.004022 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.408354 B = 6960.064626 C = 7569.590939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.071 4.071 3 C -0.159 4.159 4 C -0.104 4.104 5 H 0.099 0.901 6 C 0.082 3.918 7 O -0.574 6.574 8 C 0.504 3.496 9 O -0.529 6.529 10 N -0.644 5.644 11 C 0.010 3.990 12 C -0.096 4.096 13 C -0.144 4.144 14 C 0.099 3.901 15 C -0.466 4.466 16 H 0.074 0.926 17 C 0.070 3.930 18 N -0.810 5.810 19 Si 0.915 3.085 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.267 1.267 23 C -0.203 4.203 24 C -0.116 4.116 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.383 0.617 35 H 0.404 0.596 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.278 0.722 39 H 0.096 0.904 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.263 -3.316 0.481 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 C -0.216 4.216 4 C -0.125 4.125 5 H 0.117 0.883 6 C 0.004 3.996 7 O -0.380 6.380 8 C 0.290 3.710 9 O -0.406 6.406 10 N -0.288 5.288 11 C -0.083 4.083 12 C -0.115 4.115 13 C -0.164 4.164 14 C 0.096 3.904 15 C -0.497 4.497 16 H 0.092 0.908 17 C -0.145 4.145 18 N -0.437 5.437 19 Si 0.740 3.260 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.192 1.192 23 C -0.223 4.223 24 C -0.136 4.136 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.231 0.769 35 H 0.240 0.760 36 H 0.125 0.875 37 H 0.147 0.853 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.546 -2.218 -0.265 15.706 hybrid contribution 0.250 -0.498 0.339 0.652 sum -15.296 -2.716 0.074 15.536 Atomic orbital electron populations 1.21969 0.95247 1.01509 1.02065 1.20800 0.94666 0.97243 0.96326 1.22064 1.04769 0.94129 1.00650 1.21455 0.93645 0.96069 1.01370 0.88295 1.22212 0.98477 0.92168 0.86713 1.86338 1.81683 1.30622 1.39348 1.20321 0.89014 0.78701 0.82946 1.90633 1.69640 1.44937 1.35428 1.43147 1.05987 1.52881 1.26799 1.17364 0.80812 1.15715 0.94375 1.20642 0.94364 1.00674 0.95867 1.21297 0.92318 1.03374 0.99389 1.17700 0.93462 0.88409 0.90796 1.19434 0.91682 1.31244 1.07293 0.90771 1.25873 1.00568 0.94064 0.94042 1.69786 1.37474 1.28742 1.07681 0.86273 0.82158 0.79156 0.78440 1.19123 1.20470 1.19181 1.20686 0.92483 1.11418 0.97751 1.20091 0.94887 1.04296 0.94338 0.92682 0.92588 0.92308 0.90366 0.89174 0.93043 0.93581 0.92298 0.93091 0.76857 0.75970 0.87537 0.85297 0.91119 0.88627 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.85 37.15 0.33 -0.99 16 2 C -0.07 -0.86 2.15 -90.63 -0.19 -1.05 16 3 C -0.16 -2.15 8.87 37.15 0.33 -1.82 16 4 C -0.10 -1.34 2.10 -91.77 -0.19 -1.53 16 5 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 6 C 0.08 0.83 6.20 37.16 0.23 1.06 16 7 O -0.57 -5.72 11.36 -35.23 -0.40 -6.12 16 8 C 0.50 9.19 6.69 -10.98 -0.07 9.12 16 9 O -0.53 -11.60 11.08 5.55 0.06 -11.54 16 10 N -0.64 -12.22 5.11 -9.74 -0.05 -12.27 16 11 C 0.01 0.23 6.31 -83.57 -0.53 -0.30 16 12 C -0.10 -2.45 8.61 -39.79 -0.34 -2.79 16 13 C -0.14 -3.96 8.61 -39.26 -0.34 -4.30 16 14 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 15 C -0.47 -12.73 9.02 -37.85 -0.34 -13.07 16 16 H 0.07 1.93 7.85 -52.48 -0.41 1.52 16 17 C 0.07 1.82 5.42 -17.33 -0.09 1.73 16 18 N -0.81 -22.08 10.61 55.55 0.59 -21.49 16 19 Si 0.91 19.52 29.56 -169.99 -5.03 14.50 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.20 -5.09 9.74 -39.26 -0.38 -5.47 16 24 C -0.12 -2.66 9.90 -39.79 -0.39 -3.05 16 25 H 0.05 0.41 6.32 -51.93 -0.33 0.08 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 29 H 0.09 1.57 5.51 -51.93 -0.29 1.28 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.45 6.17 -51.93 -0.32 0.13 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.38 2.08 9.12 45.56 0.42 2.50 16 35 H 0.40 6.63 6.72 -40.82 -0.27 6.36 16 36 H 0.11 2.74 6.22 -52.49 -0.33 2.41 16 37 H 0.13 3.71 6.15 -52.48 -0.32 3.38 16 38 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 39 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 322.49 15.07 4.86 4.86 Total: -1.00 -31.52 322.49 -7.34 -38.86 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -4.79 Total: 13.55 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.58 Total: -20.35 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.54 Total: -33.76 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.34 Total: -17.66 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.52 -7.34 -38.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362348850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.141 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds