Wall clock time and date at job start Mon Mar 30 2020 01:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47594 * 2 1 4 4 C 1.53000 * 109.46802 * 119.99923 * 2 1 3 5 5 H 1.09007 * 109.47072 * 299.99786 * 4 2 1 6 6 C 1.52998 * 109.47470 * 59.99615 * 4 2 1 7 7 O 1.42902 * 109.47472 * 184.99441 * 6 4 2 8 8 C 1.50704 * 109.47305 * 179.97438 * 4 2 1 9 9 O 1.21287 * 119.99565 * 359.97438 * 8 4 2 10 10 N 1.34774 * 120.00198 * 179.97438 * 8 4 2 11 11 C 1.39237 * 119.99670 * 184.25208 * 10 8 4 12 12 C 1.39484 * 119.83781 * 324.75674 * 11 10 8 13 13 C 1.36366 * 120.16619 * 180.29651 * 12 11 10 14 14 C 1.40867 * 119.83172 * 359.48570 * 13 12 11 15 15 C 1.41156 * 120.16535 * 180.24991 * 14 13 12 16 16 H 1.08003 * 120.00138 * 215.05197 * 15 14 13 17 17 C 1.39911 * 119.99925 * 35.05334 * 15 14 13 18 18 N 1.30872 * 120.00026 * 355.45524 * 17 15 14 19 19 Si 1.86799 * 119.99976 * 175.45987 * 17 15 14 20 20 H 1.48505 * 109.46982 * 59.99930 * 19 17 15 21 21 H 1.48494 * 109.47232 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47226 * 299.99963 * 19 17 15 23 23 C 1.40863 * 119.67335 * 0.51381 * 14 13 12 24 24 C 1.36379 * 119.82471 * 359.73281 * 23 14 13 25 25 H 1.08994 * 109.47599 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47132 * 300.00328 * 1 2 3 27 27 H 1.09002 * 109.47035 * 59.99924 * 1 2 3 28 28 H 1.09001 * 109.46924 * 239.99270 * 2 1 3 29 29 H 1.08999 * 109.47631 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46991 * 300.00103 * 3 2 1 31 31 H 1.09007 * 109.47149 * 59.99682 * 3 2 1 32 32 H 1.08998 * 109.47487 * 305.00171 * 6 4 2 33 33 H 1.09003 * 109.46947 * 64.99911 * 6 4 2 34 34 H 0.96700 * 114.00219 * 179.97438 * 7 6 4 35 35 H 0.96998 * 119.99935 * 4.25572 * 10 8 4 36 36 H 1.07996 * 119.90956 * 0.02562 * 12 11 10 37 37 H 1.08006 * 120.08089 * 179.69999 * 13 12 11 38 38 H 0.96999 * 119.99858 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.08755 * 179.71613 * 23 14 13 40 40 H 1.08007 * 119.91256 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2073 2.1393 6 6 1.5298 -2.1637 1.2494 7 8 1.9079 -2.8026 2.4704 8 6 3.5469 -0.7219 1.2491 9 8 4.1534 -0.1975 0.3390 10 7 4.2207 -1.3051 2.2601 11 6 5.6102 -1.2290 2.3059 12 6 6.3462 -1.2564 1.1214 13 6 7.7077 -1.1883 1.1587 14 6 8.3701 -1.0792 2.3971 15 6 9.7788 -1.0030 2.4437 16 1 10.3180 -1.4647 3.2577 17 6 10.4766 -0.3292 1.4355 18 7 9.8320 0.1533 0.4037 19 14 12.3284 -0.1184 1.5618 20 1 12.9760 -1.4537 1.6156 21 1 12.8242 0.6242 0.3754 22 1 12.6571 0.6412 2.7948 23 6 7.6201 -1.0522 3.5892 24 6 6.2593 -1.1262 3.5362 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8932 -0.5140 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.4435 -2.1650 1.1598 33 1 1.9644 -2.7028 0.4076 34 1 1.6166 -3.7221 2.5399 35 1 3.7377 -1.7779 2.9558 36 1 5.8366 -1.3361 0.1725 37 1 8.2764 -1.2145 0.2409 38 1 10.3158 0.6207 -0.2951 39 1 8.1213 -0.9733 4.5426 40 1 5.6828 -1.1060 4.4493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362348850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:52 Heat of formation + Delta-G solvation = -99.521952 kcal Electronic energy + Delta-G solvation = -21550.577076 eV Core-core repulsion = 18328.643138 eV Total energy + Delta-G solvation = -3221.933937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.51091 -39.41284 -37.92292 -36.66013 -35.81024 -34.60802 -31.53384 -31.23837 -30.12694 -28.16410 -26.78584 -24.72146 -23.30062 -22.90166 -21.50572 -20.54703 -19.22754 -18.62748 -18.23179 -17.65212 -17.10216 -16.38757 -15.85761 -15.76786 -15.51705 -15.13649 -14.84779 -14.55570 -14.40334 -13.99050 -13.68905 -13.49102 -13.39025 -13.13151 -12.94258 -12.83106 -12.69872 -12.51835 -12.32850 -12.11615 -11.74513 -11.70443 -11.60181 -11.56348 -11.18443 -10.95389 -10.60187 -10.21285 -9.45287 -8.71174 -8.48961 -6.32256 0.82374 1.12220 1.38395 1.46644 1.51703 1.84310 2.23883 2.42233 2.81934 3.18897 3.69453 3.74990 3.86725 4.08013 4.25410 4.32546 4.42632 4.47251 4.48442 4.60644 4.74177 4.81173 4.84241 5.00561 5.03772 5.09184 5.13675 5.19607 5.28320 5.35398 5.42995 5.48500 5.58615 5.71294 5.90078 6.10166 6.16752 6.36226 6.70700 6.81174 6.91628 6.96503 7.03773 7.52410 8.44103 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.004022 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.408354 B = 6960.064626 C = 7569.590939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.070 4.070 3 C -0.159 4.159 4 C -0.095 4.095 5 H 0.115 0.885 6 C 0.088 3.912 7 O -0.589 6.589 8 C 0.496 3.504 9 O -0.570 6.570 10 N -0.639 5.639 11 C 0.022 3.978 12 C -0.109 4.109 13 C -0.167 4.167 14 C 0.065 3.935 15 C -0.499 4.499 16 H 0.080 0.920 17 C 0.023 3.977 18 N -0.848 5.848 19 Si 0.992 3.008 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.259 1.259 23 C -0.208 4.208 24 C -0.113 4.113 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.404 0.596 35 H 0.419 0.581 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.282 0.718 39 H 0.112 0.888 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.409 -3.720 2.012 18.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.216 4.216 4 C -0.116 4.116 5 H 0.133 0.867 6 C 0.010 3.990 7 O -0.399 6.399 8 C 0.285 3.715 9 O -0.450 6.450 10 N -0.285 5.285 11 C -0.072 4.072 12 C -0.129 4.129 13 C -0.187 4.187 14 C 0.063 3.937 15 C -0.530 4.530 16 H 0.098 0.902 17 C -0.188 4.188 18 N -0.477 5.477 19 Si 0.812 3.188 20 H -0.181 1.181 21 H -0.198 1.198 22 H -0.184 1.184 23 C -0.228 4.228 24 C -0.133 4.133 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.256 0.744 35 H 0.259 0.741 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.747 -2.661 1.289 17.992 hybrid contribution 0.754 -0.380 -0.141 0.856 sum -16.993 -3.041 1.149 17.301 Atomic orbital electron populations 1.21911 0.91872 1.03160 1.02993 1.20808 0.97267 0.95618 0.95245 1.22016 1.01809 0.95954 1.01831 1.21508 0.88896 0.98775 1.02429 0.86740 1.22168 1.00348 0.89891 0.86582 1.86259 1.82196 1.32446 1.38992 1.21442 0.91466 0.77046 0.81527 1.90640 1.71205 1.46260 1.36888 1.43161 1.04177 1.53428 1.27768 1.17477 0.83010 1.13106 0.93627 1.20644 0.93943 1.01602 0.96716 1.21174 0.93083 1.05515 0.98944 1.18034 0.94339 0.89748 0.91579 1.19745 0.92145 1.32683 1.08453 0.90219 1.26856 1.05773 0.93067 0.93147 1.69912 1.39579 1.29586 1.08573 0.85112 0.75468 0.79491 0.78701 1.18109 1.19754 1.18372 1.20952 0.93525 1.10791 0.97559 1.20438 0.94468 1.02706 0.95664 0.90654 0.91505 0.91613 0.91982 0.93640 0.91876 0.92436 0.88541 0.93963 0.74401 0.74100 0.88550 0.87742 0.90777 0.86952 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.85 71.98 0.64 -1.32 16 2 C -0.07 -1.57 2.15 -10.80 -0.02 -1.59 16 3 C -0.16 -4.23 8.87 71.98 0.64 -3.59 16 4 C -0.09 -2.24 2.10 -11.54 -0.02 -2.27 16 5 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 6 C 0.09 1.49 6.20 71.98 0.45 1.93 16 7 O -0.59 -9.69 11.36 -148.98 -1.69 -11.38 16 8 C 0.50 17.93 6.69 87.66 0.59 18.52 16 9 O -0.57 -25.93 11.08 -3.05 -0.03 -25.96 16 10 N -0.64 -23.55 5.11 -303.10 -1.55 -25.10 16 11 C 0.02 1.00 6.31 38.57 0.24 1.25 16 12 C -0.11 -5.84 8.61 22.13 0.19 -5.65 16 13 C -0.17 -9.73 8.61 22.48 0.19 -9.54 16 14 C 0.07 3.72 5.55 -21.28 -0.12 3.61 16 15 C -0.50 -28.16 9.02 23.39 0.21 -27.95 16 16 H 0.08 4.23 7.85 -2.91 -0.02 4.20 16 17 C 0.02 1.22 5.42 85.24 0.46 1.68 16 18 N -0.85 -48.43 10.61 21.82 0.23 -48.19 16 19 Si 0.99 40.63 29.56 68.60 2.03 42.66 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 C -0.21 -10.42 9.74 22.48 0.22 -10.20 16 24 C -0.11 -5.03 9.90 22.14 0.22 -4.81 16 25 H 0.07 0.75 6.32 -2.39 -0.02 0.73 16 26 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 29 H 0.04 1.63 5.51 -2.39 -0.01 1.62 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.10 0.97 6.17 -2.39 -0.01 0.96 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.40 2.91 9.12 -74.06 -0.68 2.24 16 35 H 0.42 12.76 6.72 -92.71 -0.62 12.13 16 36 H 0.10 5.27 6.22 -2.91 -0.02 5.25 16 37 H 0.10 6.49 6.15 -2.91 -0.02 6.47 16 38 H 0.28 14.78 8.30 -92.71 -0.77 14.01 16 39 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 40 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -72.89 322.49 2.63 -70.26 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.23 Total: 37.66 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 3.88 Total: -39.93 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -1.32 Total: -73.30 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.73 Total: -37.35 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -72.89 2.63 -70.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362348850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.267 kcal (2) G-P(sol) polarization free energy of solvation -72.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds