Wall clock time and date at job start Mon Mar 30 2020 01:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46624 * 2 1 4 4 C 1.52993 * 109.47347 * 239.99748 * 2 1 3 5 5 H 1.09004 * 109.47316 * 65.66552 * 4 2 1 6 6 C 1.52999 * 109.47432 * 305.66949 * 4 2 1 7 7 O 1.42898 * 109.47398 * 66.00867 * 6 4 2 8 8 C 1.50696 * 109.47554 * 185.66512 * 4 2 1 9 9 O 1.21288 * 119.99520 * 359.97438 * 8 4 2 10 10 N 1.34770 * 120.00535 * 179.97438 * 8 4 2 11 11 C 1.39237 * 120.00492 * 175.66499 * 10 8 4 12 12 C 1.39474 * 119.83795 * 216.01724 * 11 10 8 13 13 C 1.36382 * 120.16744 * 179.71859 * 12 11 10 14 14 C 1.40865 * 119.83054 * 0.57322 * 13 12 11 15 15 C 1.41151 * 120.16419 * 179.67827 * 14 13 12 16 16 H 1.08002 * 119.99373 * 211.02699 * 15 14 13 17 17 C 1.39895 * 120.00190 * 31.02356 * 15 14 13 18 18 N 1.30880 * 119.99955 * 8.16558 * 17 15 14 19 19 Si 1.86802 * 120.00040 * 188.15955 * 17 15 14 20 20 H 1.48495 * 109.47021 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46614 * 120.00289 * 19 17 15 22 22 H 1.48494 * 109.47361 * 239.99938 * 19 17 15 23 23 C 1.40873 * 119.67013 * 359.69831 * 14 13 12 24 24 C 1.36374 * 119.82795 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.47356 * 69.37638 * 1 2 3 26 26 H 1.08995 * 109.47389 * 309.36919 * 1 2 3 27 27 H 1.09007 * 109.47117 * 189.37414 * 1 2 3 28 28 H 1.09003 * 109.47241 * 119.99669 * 2 1 3 29 29 H 1.09007 * 109.46950 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47482 * 299.99491 * 3 2 1 31 31 H 1.08995 * 109.47631 * 60.00345 * 3 2 1 32 32 H 1.08998 * 109.47386 * 186.01376 * 6 4 2 33 33 H 1.09007 * 109.46796 * 306.01485 * 6 4 2 34 34 H 0.96696 * 114.00533 * 180.02562 * 7 6 4 35 35 H 0.97001 * 119.99794 * 355.67047 * 10 8 4 36 36 H 1.08003 * 119.91647 * 0.02562 * 12 11 10 37 37 H 1.08007 * 120.07932 * 180.25052 * 13 12 11 38 38 H 0.97000 * 119.99493 * 180.02562 * 18 17 15 39 39 H 1.07997 * 120.08579 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.91535 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.7619 -0.1523 -2.1363 6 6 1.4171 -2.1168 -1.3225 7 8 0.0078 -1.9992 -1.5277 8 6 3.5404 -0.8439 -1.1811 9 8 4.1426 -0.3978 -0.2274 10 7 4.2132 -1.4492 -2.1797 11 6 5.6050 -1.4831 -2.1613 12 6 6.3176 -1.3798 -3.3558 13 6 7.6811 -1.4064 -3.3449 14 6 8.3694 -1.5508 -2.1244 15 6 9.7804 -1.5860 -2.1057 16 1 10.2961 -2.1622 -1.3518 17 6 10.5106 -0.8746 -3.0637 18 7 9.8973 -0.0516 -3.8757 19 14 12.3612 -1.0994 -3.1839 20 1 12.8083 -2.0786 -2.1611 21 1 12.7119 -1.6020 -4.5366 22 1 13.0343 0.2035 -2.9502 23 6 7.6426 -1.6602 -0.9226 24 6 6.2796 -1.6263 -0.9488 25 1 -0.3634 0.3619 -0.9617 26 1 -0.3634 0.6518 0.7944 27 1 -0.3634 -1.0140 0.1674 28 1 1.8934 -0.5138 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.8601 -2.6694 -2.1509 33 1 1.6052 -2.6481 -0.3894 34 1 -0.4536 -2.8471 -1.5839 35 1 3.7277 -1.8613 -2.9115 36 1 5.7884 -1.2735 -4.2912 37 1 8.2316 -1.3222 -4.2704 38 1 10.4036 0.4413 -4.5402 39 1 8.1635 -1.7716 0.0169 40 1 5.7209 -1.7105 -0.0283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362348851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:55 Heat of formation + Delta-G solvation = -98.193636 kcal Electronic energy + Delta-G solvation = -21358.908499 eV Core-core repulsion = 18137.032162 eV Total energy + Delta-G solvation = -3221.876337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.55422 -39.45911 -38.16382 -36.38002 -35.63077 -34.76253 -31.68677 -31.35843 -30.16127 -27.94795 -26.80011 -24.75563 -23.47122 -22.76051 -21.58122 -20.54589 -19.29019 -18.98495 -17.93293 -17.47309 -17.04780 -16.62723 -16.05275 -15.80525 -15.68116 -15.17408 -14.63147 -14.46592 -14.09353 -13.99250 -13.78566 -13.65195 -13.30589 -13.16681 -12.94432 -12.83565 -12.77830 -12.71395 -12.48347 -11.96870 -11.72432 -11.55995 -11.51093 -11.39869 -11.20600 -10.80104 -10.61915 -10.48518 -9.48157 -8.80214 -8.56426 -6.32047 0.77988 1.12468 1.39350 1.42617 1.54295 1.75211 2.22361 2.28412 2.77260 3.31258 3.65997 3.68724 3.85183 4.07305 4.31653 4.38739 4.39972 4.46458 4.52185 4.57194 4.80547 4.82621 4.90160 4.91932 5.07190 5.12441 5.13400 5.22376 5.32601 5.33916 5.41463 5.50356 5.65229 5.66839 5.89072 6.01887 6.10477 6.37244 6.64620 6.71326 6.93916 6.95428 6.98248 7.38488 8.38557 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040471 B = 0.003509 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.684829 B = 7978.179130 C = 8182.014810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.152 4.152 4 C -0.094 4.094 5 H 0.113 0.887 6 C 0.094 3.906 7 O -0.566 6.566 8 C 0.505 3.495 9 O -0.561 6.561 10 N -0.644 5.644 11 C 0.014 3.986 12 C -0.115 4.115 13 C -0.161 4.161 14 C 0.074 3.926 15 C -0.498 4.498 16 H 0.073 0.927 17 C 0.031 3.969 18 N -0.836 5.836 19 Si 0.987 3.013 20 H -0.260 1.260 21 H -0.262 1.262 22 H -0.269 1.269 23 C -0.228 4.228 24 C -0.090 4.090 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.397 0.603 35 H 0.415 0.585 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.287 0.713 39 H 0.094 0.906 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.798 -3.625 0.194 17.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.210 4.210 4 C -0.115 4.115 5 H 0.131 0.869 6 C 0.015 3.985 7 O -0.375 6.375 8 C 0.293 3.707 9 O -0.439 6.439 10 N -0.289 5.289 11 C -0.079 4.079 12 C -0.135 4.135 13 C -0.181 4.181 14 C 0.071 3.929 15 C -0.528 4.528 16 H 0.091 0.909 17 C -0.182 4.182 18 N -0.463 5.463 19 Si 0.808 3.192 20 H -0.184 1.184 21 H -0.186 1.186 22 H -0.194 1.194 23 C -0.248 4.248 24 C -0.110 4.110 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.247 0.753 35 H 0.253 0.747 36 H 0.142 0.858 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.236 -2.507 0.687 16.442 hybrid contribution 0.907 -0.518 -0.322 1.093 sum -15.328 -3.025 0.365 15.628 Atomic orbital electron populations 1.21807 0.92215 1.02999 1.01331 1.20868 0.97208 0.95472 0.95547 1.21936 1.00992 0.96257 1.01785 1.21412 0.88201 0.99497 1.02413 0.86860 1.21847 0.82614 0.93306 1.00715 1.86582 1.18498 1.36621 1.95815 1.21108 0.90621 0.76834 0.82120 1.90664 1.70780 1.48621 1.33862 1.42999 1.04312 1.55550 1.26043 1.17274 0.82624 1.14181 0.93848 1.20536 0.94160 1.02548 0.96303 1.20949 0.92982 1.06130 0.98084 1.18003 0.94142 0.89337 0.91380 1.19793 0.91956 1.27902 1.13176 0.90877 1.26736 1.05940 0.92416 0.93141 1.69863 1.39974 1.19948 1.16539 0.85084 0.75741 0.79048 0.79343 1.18356 1.18610 1.19381 1.20878 0.93885 1.13061 0.96973 1.20471 0.93872 0.99985 0.96678 0.92546 0.93294 0.90340 0.92424 0.94065 0.92490 0.92108 0.91660 0.93103 0.75267 0.74710 0.85817 0.87151 0.90291 0.88793 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.75 71.98 0.56 -1.84 16 2 C -0.07 -1.74 2.16 -10.80 -0.02 -1.76 16 3 C -0.15 -4.08 8.93 71.98 0.64 -3.43 16 4 C -0.09 -2.18 2.15 -11.54 -0.02 -2.20 16 5 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 6 C 0.09 1.56 6.17 71.98 0.44 2.00 16 7 O -0.57 -7.47 10.04 -148.98 -1.50 -8.97 16 8 C 0.50 16.53 6.70 87.66 0.59 17.12 16 9 O -0.56 -23.50 11.49 -3.05 -0.04 -23.54 16 10 N -0.64 -20.93 5.19 -303.12 -1.57 -22.51 16 11 C 0.01 0.61 6.29 38.56 0.24 0.86 16 12 C -0.12 -5.16 9.90 22.13 0.22 -4.94 16 13 C -0.16 -8.43 8.59 22.48 0.19 -8.23 16 14 C 0.07 4.09 5.54 -21.28 -0.12 3.98 16 15 C -0.50 -27.52 9.04 23.39 0.21 -27.31 16 16 H 0.07 3.92 7.86 -2.91 -0.02 3.90 16 17 C 0.03 1.57 5.28 85.24 0.45 2.02 16 18 N -0.84 -44.29 10.85 21.82 0.24 -44.06 16 19 Si 0.99 38.94 29.57 68.60 2.03 40.97 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 21 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 23 C -0.23 -11.99 9.74 22.48 0.22 -11.77 16 24 C -0.09 -4.36 8.61 22.14 0.19 -4.17 16 25 H 0.06 1.06 7.92 -2.39 -0.02 1.04 16 26 H 0.05 0.87 8.12 -2.39 -0.02 0.85 16 27 H 0.08 1.36 6.10 -2.38 -0.01 1.34 16 28 H 0.06 1.58 7.93 -2.39 -0.02 1.56 16 29 H 0.04 1.39 6.01 -2.38 -0.01 1.38 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 0.90 7.31 -2.39 -0.02 0.88 16 33 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.40 1.72 9.12 -74.06 -0.68 1.04 16 35 H 0.42 9.96 8.04 -92.71 -0.75 9.21 16 36 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.11 5.97 6.29 -2.91 -0.02 5.95 16 38 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 39 H 0.09 4.78 8.06 -2.91 -0.02 4.76 16 40 H 0.11 5.09 6.30 -2.91 -0.02 5.07 16 Total: -1.00 -67.80 323.28 2.59 -65.21 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: -0.36 Total: 32.57 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 3.79 Total: -39.69 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -1.34 Total: -66.56 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.53 Total: -32.50 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -67.80 2.59 -65.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362348851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.983 kcal (2) G-P(sol) polarization free energy of solvation -67.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds