Wall clock time and date at job start Mon Mar 30 2020 02:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46906 * 110.99851 * 2 1 4 4 C 1.50696 * 109.47133 * 66.04630 * 3 2 1 5 5 C 1.38636 * 119.74961 * 269.72845 * 4 3 2 6 6 C 1.37611 * 120.24980 * 179.72516 * 5 4 3 7 7 C 1.40717 * 119.74202 * 0.56439 * 6 5 4 8 8 C 1.41400 * 120.24539 * 179.68368 * 7 6 5 9 9 H 1.07994 * 120.00090 * 204.40900 * 8 7 6 10 10 C 1.39952 * 119.99631 * 24.40900 * 8 7 6 11 11 N 1.30819 * 120.00273 * 17.84643 * 10 8 7 12 12 Si 1.86792 * 119.99748 * 197.84555 * 10 8 7 13 13 H 1.48500 * 109.47078 * 89.99962 * 12 10 8 14 14 H 1.48499 * 109.47193 * 210.00078 * 12 10 8 15 15 H 1.48504 * 109.47370 * 330.00016 * 12 10 8 16 16 C 1.40719 * 119.51414 * 359.70514 * 7 6 5 17 17 C 1.37614 * 119.74045 * 0.02562 * 16 7 6 18 18 C 1.46898 * 111.00162 * 236.04854 * 2 1 3 19 19 C 1.53000 * 109.47236 * 63.95252 * 18 2 1 20 20 C 1.53002 * 109.47507 * 183.95366 * 18 2 1 21 21 C 1.50699 * 109.46903 * 303.95185 * 18 2 1 22 22 O 1.20829 * 120.00445 * 144.99779 * 21 18 2 23 23 O 1.34230 * 120.00009 * 325.00204 * 21 18 2 24 24 H 1.09001 * 109.47007 * 183.94877 * 1 2 3 25 25 H 1.08998 * 109.46840 * 303.95747 * 1 2 3 26 26 H 1.09005 * 109.46669 * 63.95677 * 1 2 3 27 27 H 1.08999 * 109.46838 * 186.04834 * 3 2 1 28 28 H 1.09004 * 109.46930 * 306.04357 * 3 2 1 29 29 H 1.08002 * 119.87050 * 359.97438 * 5 4 3 30 30 H 1.07997 * 120.13132 * 180.27502 * 6 5 4 31 31 H 0.96991 * 120.00408 * 180.02562 * 11 10 8 32 32 H 1.08002 * 120.12971 * 179.97438 * 16 7 6 33 33 H 1.08011 * 119.87321 * 179.97438 * 17 16 7 34 34 H 1.08996 * 109.47139 * 60.00383 * 19 18 2 35 35 H 1.09007 * 109.47066 * 180.02562 * 19 18 2 36 36 H 1.09004 * 109.47091 * 299.99698 * 19 18 2 37 37 H 1.09007 * 109.46861 * 59.99811 * 20 18 2 38 38 H 1.08995 * 109.47223 * 179.97438 * 20 18 2 39 39 H 1.08998 * 109.47140 * 300.00325 * 20 18 2 40 40 H 0.96703 * 116.99750 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 6 0.4490 2.7545 1.4007 6 6 0.1087 3.3707 2.5832 7 6 0.9775 3.2908 3.6873 8 6 0.6416 3.9256 4.9053 9 1 1.4194 4.2104 5.5982 10 6 -0.6989 4.1848 5.2128 11 7 -1.6504 3.5524 4.5754 12 14 -1.1296 5.4337 6.5333 13 1 -1.2695 6.7775 5.9169 14 1 -2.4104 5.0496 7.1792 15 1 -0.0511 5.4671 7.5537 16 6 2.1833 2.5748 3.5702 17 6 2.5004 1.9618 2.3797 18 6 1.9955 -0.7659 -1.1376 19 6 1.5870 -0.0836 -2.4447 20 6 3.5218 -0.8263 -1.0493 21 6 1.4347 -2.1643 -1.1042 22 8 1.1836 -2.7394 -2.1368 23 8 1.2140 -2.7710 0.0726 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3633 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9234 27 1 3.0797 1.3444 -0.1083 28 1 1.5611 1.9274 -0.8310 29 1 -0.2137 2.8188 0.5504 30 1 -0.8192 3.9175 2.6621 31 1 -2.5794 3.7323 4.7882 32 1 2.8575 2.5074 4.4112 33 1 3.4255 1.4121 2.2873 34 1 1.9926 0.9278 -2.4688 35 1 1.9773 -0.6522 -3.2888 36 1 0.4996 -0.0407 -2.5077 37 1 3.8128 -1.3125 -0.1180 38 1 3.9123 -1.3950 -1.8931 39 1 3.9274 0.1851 -1.0733 40 1 0.8530 -3.6676 0.0433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399131296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:10 Heat of formation + Delta-G solvation = -67.662829 kcal Electronic energy + Delta-G solvation = -21748.959111 eV Core-core repulsion = 18528.406689 eV Total energy + Delta-G solvation = -3220.552422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71490 -38.39051 -37.01301 -36.09240 -33.85889 -32.08541 -30.08961 -29.31420 -27.79395 -27.05257 -24.94981 -24.66297 -22.46058 -20.92045 -20.04219 -19.16923 -17.96460 -17.29102 -16.78490 -15.92137 -15.30940 -14.82951 -14.69161 -14.43307 -13.96533 -13.69486 -13.53622 -13.31501 -12.70949 -12.52409 -12.30563 -12.05032 -11.95619 -11.93110 -11.53926 -11.52003 -11.38861 -11.21568 -11.12432 -10.96367 -10.92040 -10.59734 -10.36547 -10.22951 -9.56868 -9.37405 -9.13619 -8.04240 -7.42579 -7.28602 -6.76304 -4.34754 2.17033 2.72700 3.05248 3.06499 3.09576 3.10303 3.17500 3.92694 4.07084 4.65647 4.68674 4.86739 5.23116 5.36599 5.43875 5.53362 5.67770 5.71180 5.74239 5.77741 5.83024 5.96236 5.99860 6.15202 6.27446 6.37693 6.40683 6.44945 6.49837 6.94904 7.07653 7.19555 7.27579 7.35032 7.39250 7.62491 7.88456 7.96919 8.06100 8.14124 8.31154 8.64563 8.90177 8.98394 10.17968 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033879 B = 0.003896 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.278535 B = 7185.652315 C = 7387.190722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.511 5.511 3 C 0.115 3.885 4 C -0.209 4.209 5 C -0.094 4.094 6 C -0.167 4.167 7 C 0.113 3.887 8 C -0.463 4.463 9 H 0.077 0.923 10 C 0.077 3.923 11 N -0.792 5.792 12 Si 0.907 3.093 13 H -0.268 1.268 14 H -0.278 1.278 15 H -0.262 1.262 16 C -0.228 4.228 17 C -0.067 4.067 18 C 0.114 3.886 19 C -0.173 4.173 20 C -0.141 4.141 21 C 0.498 3.502 22 O -0.526 6.526 23 O -0.493 6.493 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.022 0.978 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.280 0.720 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 -6.217 -8.892 11.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.235 5.235 3 C -0.011 4.011 4 C -0.211 4.211 5 C -0.112 4.112 6 C -0.186 4.186 7 C 0.110 3.890 8 C -0.493 4.493 9 H 0.095 0.905 10 C -0.141 4.141 11 N -0.418 5.418 12 Si 0.731 3.269 13 H -0.193 1.193 14 H -0.204 1.204 15 H -0.186 1.186 16 C -0.248 4.248 17 C -0.086 4.086 18 C 0.022 3.978 19 C -0.232 4.232 20 C -0.198 4.198 21 C 0.341 3.659 22 O -0.415 6.415 23 O -0.302 6.302 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 4.088 -6.248 -8.727 11.485 hybrid contribution -0.979 0.207 -0.114 1.008 sum 3.109 -6.040 -8.841 11.150 Atomic orbital electron populations 1.22558 0.87187 1.01763 1.01664 1.62470 1.08265 1.15231 1.37583 1.20915 0.98839 0.85571 0.95771 1.18774 0.98529 1.08666 0.95086 1.20510 0.95163 0.98785 0.96791 1.21271 1.01569 1.03952 0.91807 1.17622 0.90497 0.88308 0.92529 1.19621 0.92336 1.34030 1.03275 0.90478 1.25899 0.96301 0.94937 0.96981 1.69824 1.01296 1.33333 1.37305 0.86334 0.78524 0.81137 0.80858 1.19311 1.20352 1.18621 1.20966 1.00787 1.06090 0.96949 1.20313 0.97259 0.97952 0.93044 1.20947 0.96981 0.87530 0.92313 1.22381 1.02644 1.01445 0.96751 1.21912 0.90959 1.03895 1.03019 1.23379 0.73236 0.88679 0.80645 1.90689 1.49139 1.66600 1.35051 1.84751 1.76640 1.34135 1.34665 0.92310 0.88926 0.95951 0.91014 0.95252 0.89943 0.86598 0.90923 0.89143 0.89476 0.90589 0.91025 0.91819 0.90603 0.91839 0.90235 0.74185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.54 60.07 0.51 0.77 16 2 N -0.51 -8.09 4.36 -229.93 -1.00 -9.09 16 3 C 0.11 1.89 4.21 -4.97 -0.02 1.87 16 4 C -0.21 -4.31 4.91 -104.33 -0.51 -4.82 16 5 C -0.09 -2.08 7.87 -39.66 -0.31 -2.39 16 6 C -0.17 -4.22 8.70 -38.87 -0.34 -4.56 16 7 C 0.11 2.96 5.58 -106.82 -0.60 2.37 16 8 C -0.46 -12.18 9.05 -37.74 -0.34 -12.52 16 9 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 10 C 0.08 1.90 5.14 -17.34 -0.09 1.82 16 11 N -0.79 -20.27 10.95 55.55 0.61 -19.67 16 12 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 13 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 15 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 16 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 17 C -0.07 -1.45 9.67 -39.66 -0.38 -1.84 16 18 C 0.11 1.53 0.67 -132.75 -0.09 1.44 16 19 C -0.17 -2.13 7.32 37.16 0.27 -1.85 16 20 C -0.14 -1.61 8.25 37.16 0.31 -1.31 16 21 C 0.50 6.96 5.87 36.01 0.21 7.17 16 22 O -0.53 -8.22 16.85 -18.75 -0.32 -8.54 16 23 O -0.49 -6.21 12.17 -39.26 -0.48 -6.68 16 24 H 0.06 0.91 6.31 -51.93 -0.33 0.58 16 25 H 0.09 1.74 5.90 -51.93 -0.31 1.44 16 26 H 0.02 0.33 6.40 -51.93 -0.33 0.00 16 27 H 0.07 1.07 5.77 -51.93 -0.30 0.77 16 28 H 0.03 0.46 6.80 -51.93 -0.35 0.11 16 29 H 0.08 1.67 7.99 -52.49 -0.42 1.25 16 30 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 31 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 32 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.08 0.86 6.63 -51.93 -0.34 0.52 16 35 H 0.07 0.83 7.87 -51.92 -0.41 0.42 16 36 H 0.06 0.82 6.49 -51.93 -0.34 0.48 16 37 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.85 6.20 -51.93 -0.32 0.53 16 40 H 0.40 3.12 9.10 45.56 0.41 3.54 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -29.03 321.05 -7.74 -36.76 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.60 Total: 8.66 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -1.76 Total: -19.76 kcal Atomic # 7 Polarization: -28.36 SS G_CDS: -0.39 Total: -28.76 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.79 Total: -15.22 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.03 -7.74 -36.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399131296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.898 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds