Wall clock time and date at job start Mon Mar 30 2020 02:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46906 * 110.99851 * 2 1 4 4 C 1.50696 * 109.47133 * 66.04630 * 3 2 1 5 5 C 1.38636 * 119.74961 * 269.72845 * 4 3 2 6 6 C 1.37611 * 120.24980 * 179.72516 * 5 4 3 7 7 C 1.40717 * 119.74202 * 0.56439 * 6 5 4 8 8 C 1.41400 * 120.24539 * 179.68368 * 7 6 5 9 9 H 1.07994 * 120.00090 * 204.40900 * 8 7 6 10 10 C 1.39952 * 119.99631 * 24.40900 * 8 7 6 11 11 N 1.30819 * 120.00273 * 17.84643 * 10 8 7 12 12 Si 1.86792 * 119.99748 * 197.84555 * 10 8 7 13 13 H 1.48500 * 109.47078 * 89.99962 * 12 10 8 14 14 H 1.48499 * 109.47193 * 210.00078 * 12 10 8 15 15 H 1.48504 * 109.47370 * 330.00016 * 12 10 8 16 16 C 1.40719 * 119.51414 * 359.70514 * 7 6 5 17 17 C 1.37614 * 119.74045 * 0.02562 * 16 7 6 18 18 C 1.46898 * 111.00162 * 236.04854 * 2 1 3 19 19 C 1.53000 * 109.47236 * 63.95252 * 18 2 1 20 20 C 1.53002 * 109.47507 * 183.95366 * 18 2 1 21 21 C 1.50699 * 109.46903 * 303.95185 * 18 2 1 22 22 O 1.20829 * 120.00445 * 144.99779 * 21 18 2 23 23 O 1.34230 * 120.00009 * 325.00204 * 21 18 2 24 24 H 1.09001 * 109.47007 * 183.94877 * 1 2 3 25 25 H 1.08998 * 109.46840 * 303.95747 * 1 2 3 26 26 H 1.09005 * 109.46669 * 63.95677 * 1 2 3 27 27 H 1.08999 * 109.46838 * 186.04834 * 3 2 1 28 28 H 1.09004 * 109.46930 * 306.04357 * 3 2 1 29 29 H 1.08002 * 119.87050 * 359.97438 * 5 4 3 30 30 H 1.07997 * 120.13132 * 180.27502 * 6 5 4 31 31 H 0.96991 * 120.00408 * 180.02562 * 11 10 8 32 32 H 1.08002 * 120.12971 * 179.97438 * 16 7 6 33 33 H 1.08011 * 119.87321 * 179.97438 * 17 16 7 34 34 H 1.08996 * 109.47139 * 60.00383 * 19 18 2 35 35 H 1.09007 * 109.47066 * 180.02562 * 19 18 2 36 36 H 1.09004 * 109.47091 * 299.99698 * 19 18 2 37 37 H 1.09007 * 109.46861 * 59.99811 * 20 18 2 38 38 H 1.08995 * 109.47223 * 179.97438 * 20 18 2 39 39 H 1.08998 * 109.47140 * 300.00325 * 20 18 2 40 40 H 0.96703 * 116.99750 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 6 0.4490 2.7545 1.4007 6 6 0.1087 3.3707 2.5832 7 6 0.9775 3.2908 3.6873 8 6 0.6416 3.9256 4.9053 9 1 1.4194 4.2104 5.5982 10 6 -0.6989 4.1848 5.2128 11 7 -1.6504 3.5524 4.5754 12 14 -1.1296 5.4337 6.5333 13 1 -1.2695 6.7775 5.9169 14 1 -2.4104 5.0496 7.1792 15 1 -0.0511 5.4671 7.5537 16 6 2.1833 2.5748 3.5702 17 6 2.5004 1.9618 2.3797 18 6 1.9955 -0.7659 -1.1376 19 6 1.5870 -0.0836 -2.4447 20 6 3.5218 -0.8263 -1.0493 21 6 1.4347 -2.1643 -1.1042 22 8 1.1836 -2.7394 -2.1368 23 8 1.2140 -2.7710 0.0726 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3633 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9234 27 1 3.0797 1.3444 -0.1083 28 1 1.5611 1.9274 -0.8310 29 1 -0.2137 2.8188 0.5504 30 1 -0.8192 3.9175 2.6621 31 1 -2.5794 3.7323 4.7882 32 1 2.8575 2.5074 4.4112 33 1 3.4255 1.4121 2.2873 34 1 1.9926 0.9278 -2.4688 35 1 1.9773 -0.6522 -3.2888 36 1 0.4996 -0.0407 -2.5077 37 1 3.8128 -1.3125 -0.1180 38 1 3.9123 -1.3950 -1.8931 39 1 3.9274 0.1851 -1.0733 40 1 0.8530 -3.6676 0.0433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399131296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:09 Heat of formation + Delta-G solvation = -85.496323 kcal Electronic energy + Delta-G solvation = -21749.732430 eV Core-core repulsion = 18528.406689 eV Total energy + Delta-G solvation = -3221.325740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.80104 -39.84497 -38.51460 -37.15296 -35.62817 -33.41907 -31.65226 -31.13074 -29.15008 -28.21871 -26.49760 -25.80004 -23.91020 -22.73567 -21.61621 -20.34972 -19.18119 -19.04343 -17.92468 -17.11368 -17.00868 -16.10652 -15.91902 -15.86208 -15.60462 -15.02594 -14.93564 -14.61774 -14.17666 -13.84883 -13.75154 -13.46407 -13.28622 -13.04319 -13.01727 -12.82960 -12.66488 -12.59705 -12.46027 -12.37198 -12.33349 -12.09712 -11.91002 -11.44109 -11.31318 -11.18008 -10.97302 -9.36492 -9.21310 -9.08396 -8.60107 -6.29102 0.96090 1.12876 1.22993 1.38838 1.51564 1.52948 2.11050 2.22356 2.65221 3.01766 3.71051 3.80717 3.90019 4.12999 4.29035 4.31398 4.46114 4.49224 4.62933 4.63718 4.70088 4.72910 4.75528 4.83525 4.92159 5.05714 5.10761 5.15397 5.20067 5.25936 5.43463 5.53724 5.54500 5.76610 5.96798 6.01399 6.13106 6.17434 6.34390 6.46063 6.76438 6.99524 7.02029 7.10222 8.36254 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033879 B = 0.003896 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.278535 B = 7185.652315 C = 7387.190722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.520 5.520 3 C 0.119 3.881 4 C -0.192 4.192 5 C -0.093 4.093 6 C -0.192 4.192 7 C 0.080 3.920 8 C -0.504 4.504 9 H 0.072 0.928 10 C 0.036 3.964 11 N -0.826 5.826 12 Si 0.979 3.021 13 H -0.262 1.262 14 H -0.269 1.269 15 H -0.259 1.259 16 C -0.245 4.245 17 C -0.070 4.070 18 C 0.111 3.889 19 C -0.170 4.170 20 C -0.139 4.139 21 C 0.500 3.500 22 O -0.546 6.546 23 O -0.499 6.499 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.035 0.965 27 H 0.096 0.904 28 H 0.043 0.957 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.286 0.714 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.082 -6.714 -10.161 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.245 5.245 3 C -0.007 4.007 4 C -0.194 4.194 5 C -0.112 4.112 6 C -0.211 4.211 7 C 0.077 3.923 8 C -0.534 4.534 9 H 0.090 0.910 10 C -0.178 4.178 11 N -0.453 5.453 12 Si 0.800 3.200 13 H -0.187 1.187 14 H -0.193 1.193 15 H -0.183 1.183 16 C -0.265 4.265 17 C -0.088 4.088 18 C 0.021 3.979 19 C -0.229 4.229 20 C -0.196 4.196 21 C 0.344 3.656 22 O -0.436 6.436 23 O -0.311 6.311 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.114 0.886 28 H 0.061 0.939 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 5.082 -6.771 -9.998 13.100 hybrid contribution -1.226 0.203 0.149 1.252 sum 3.856 -6.568 -9.849 12.450 Atomic orbital electron populations 1.22449 0.87771 1.01635 1.00906 1.62307 1.07861 1.14834 1.39537 1.20884 1.00464 0.85834 0.93493 1.19227 0.96916 1.06610 0.96605 1.20731 0.96087 0.98087 0.96258 1.21231 1.01277 1.05499 0.93115 1.17951 0.91751 0.89508 0.93060 1.19847 0.93280 1.36335 1.03951 0.90978 1.26701 0.95641 0.96270 0.99188 1.69880 1.01787 1.34597 1.39004 0.85248 0.78406 0.78395 0.77922 1.18717 1.19345 1.18306 1.21170 1.00440 1.06548 0.98329 1.20653 0.98501 0.97340 0.92316 1.21092 0.98190 0.86867 0.91794 1.22366 1.02151 1.02103 0.96257 1.21945 0.89275 1.04897 1.03507 1.23461 0.72761 0.88873 0.80543 1.90686 1.50072 1.67187 1.35683 1.84707 1.76504 1.35727 1.34150 0.91872 0.91935 0.94703 0.88609 0.93880 0.88158 0.88589 0.90323 0.88960 0.86531 0.89345 0.90274 0.92705 0.91134 0.90226 0.89053 0.71924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 8.54 127.69 1.09 1.72 16 2 N -0.52 -15.06 4.36 -881.38 -3.84 -18.90 16 3 C 0.12 3.52 4.21 85.55 0.36 3.88 16 4 C -0.19 -7.60 4.91 -19.68 -0.10 -7.69 16 5 C -0.09 -4.11 7.87 22.22 0.17 -3.94 16 6 C -0.19 -10.02 8.70 22.73 0.20 -9.83 16 7 C 0.08 4.32 5.58 -21.29 -0.12 4.20 16 8 C -0.50 -27.65 9.05 23.46 0.21 -27.44 16 9 H 0.07 3.84 7.91 -2.91 -0.02 3.81 16 10 C 0.04 1.86 5.14 85.26 0.44 2.30 16 11 N -0.83 -43.81 10.95 21.83 0.24 -43.57 16 12 Si 0.98 38.73 29.59 68.60 2.03 40.76 16 13 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 14 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 15 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 16 C -0.25 -12.02 9.80 22.73 0.22 -11.80 16 17 C -0.07 -2.93 9.67 22.22 0.21 -2.71 16 18 C 0.11 2.65 0.67 2.78 0.00 2.65 16 19 C -0.17 -3.61 7.32 71.98 0.53 -3.09 16 20 C -0.14 -2.67 8.25 71.98 0.59 -2.08 16 21 C 0.50 12.77 5.87 71.24 0.42 13.19 16 22 O -0.55 -15.88 16.85 21.96 0.37 -15.51 16 23 O -0.50 -11.51 12.17 -51.41 -0.63 -12.13 16 24 H 0.06 1.86 6.31 -2.39 -0.02 1.84 16 25 H 0.06 2.31 5.90 -2.39 -0.01 2.29 16 26 H 0.03 0.97 6.40 -2.38 -0.02 0.96 16 27 H 0.10 2.43 5.77 -2.39 -0.01 2.41 16 28 H 0.04 1.19 6.80 -2.38 -0.02 1.17 16 29 H 0.10 4.00 7.99 -2.91 -0.02 3.97 16 30 H 0.10 5.32 6.16 -2.91 -0.02 5.30 16 31 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 32 H 0.09 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.09 1.65 6.63 -2.39 -0.02 1.63 16 35 H 0.08 1.58 7.87 -2.38 -0.02 1.56 16 36 H 0.05 1.26 6.49 -2.38 -0.02 1.24 16 37 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.54 6.20 -2.39 -0.01 1.52 16 40 H 0.42 5.70 9.10 -74.06 -0.67 5.03 16 Total: -1.00 -63.92 321.05 2.80 -61.12 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.39 Total: 28.86 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 4.24 Total: -40.63 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -3.60 Total: -62.47 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.26 Total: -27.64 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -63.92 2.80 -61.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399131296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.377 kcal (2) G-P(sol) polarization free energy of solvation -63.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds