Wall clock time and date at job start Mon Mar 30 2020 01:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46881 * 2 1 4 4 C 1.52998 * 109.47187 * 119.99565 * 2 1 3 5 5 H 1.08999 * 109.47515 * 300.00428 * 4 2 1 6 6 N 1.46906 * 109.47089 * 60.00261 * 4 2 1 7 7 C 1.46905 * 110.99969 * 205.00106 * 6 4 2 8 8 C 1.50697 * 109.47043 * 180.02562 * 7 6 4 9 9 C 1.38632 * 119.74815 * 269.73021 * 8 7 6 10 10 C 1.37623 * 120.25129 * 179.72192 * 9 8 7 11 11 C 1.40719 * 119.73884 * 0.56767 * 10 9 8 12 12 C 1.41396 * 120.24234 * 179.68315 * 11 10 9 13 13 H 1.08003 * 119.99895 * 24.40892 * 12 11 10 14 14 C 1.39943 * 119.99968 * 204.40886 * 12 11 10 15 15 N 1.30831 * 120.00012 * 17.85498 * 14 12 11 16 16 Si 1.86797 * 120.00233 * 197.85292 * 14 12 11 17 17 H 1.48503 * 109.47008 * 60.00406 * 16 14 12 18 18 H 1.48496 * 109.47222 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47337 * 300.00436 * 16 14 12 20 20 C 1.40719 * 119.51099 * 359.70205 * 11 10 9 21 21 C 1.37614 * 119.74825 * 0.02562 * 20 11 10 22 22 C 1.50695 * 109.47503 * 180.02562 * 4 2 1 23 23 O 1.20827 * 120.00341 * 240.00584 * 22 4 2 24 24 O 1.34226 * 120.00285 * 59.99506 * 22 4 2 25 25 H 1.09001 * 109.47757 * 299.99875 * 1 2 3 26 26 H 1.08995 * 109.47234 * 60.00301 * 1 2 3 27 27 H 1.09006 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47728 * 239.99343 * 2 1 3 29 29 H 1.09005 * 109.46682 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46895 * 299.99563 * 3 2 1 31 31 H 1.08991 * 109.47302 * 59.99813 * 3 2 1 32 32 H 1.00901 * 110.99483 * 328.95353 * 6 4 2 33 33 H 1.08998 * 109.46744 * 299.99971 * 7 6 4 34 34 H 1.09004 * 109.47121 * 59.99721 * 7 6 4 35 35 H 1.08007 * 119.87920 * 359.97438 * 9 8 7 36 36 H 1.07992 * 120.12959 * 180.27467 * 10 9 8 37 37 H 0.96994 * 119.99718 * 179.97438 * 15 14 12 38 38 H 1.08001 * 120.12404 * 179.97438 * 20 11 10 39 39 H 1.07998 * 119.87535 * 179.97438 * 21 20 11 40 40 H 0.96703 * 117.00392 * 180.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6766 -0.2073 2.1393 6 7 1.5503 -2.1062 1.2493 7 6 1.4875 -2.6423 2.6156 8 6 0.9827 -4.0617 2.5756 9 6 -0.3779 -4.3107 2.6676 10 6 -0.8507 -5.6025 2.6264 11 6 0.0539 -6.6732 2.5023 12 6 -0.4197 -8.0050 2.4657 13 1 -1.4290 -8.2105 2.1408 14 6 0.4193 -9.0569 2.8504 15 7 1.4903 -8.8129 3.5611 16 14 0.0102 -10.8092 2.3491 17 1 -0.0278 -10.9042 0.8676 18 1 1.0485 -11.7303 2.8770 19 1 -1.3148 -11.1862 2.9034 20 6 1.4333 -6.4088 2.4154 21 6 1.8830 -5.1088 2.4531 22 6 3.5469 -0.7206 1.2497 23 8 4.1515 -1.7668 1.2496 24 8 4.2177 0.4420 1.2498 25 1 -0.3635 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 0.6527 -2.1723 0.7933 33 1 2.4829 -2.6234 3.0594 34 1 0.8111 -2.0324 3.2145 35 1 -1.0700 -3.4875 2.7679 36 1 -1.9114 -5.7939 2.6938 37 1 2.0716 -9.5421 3.8280 38 1 2.1363 -7.2231 2.3204 39 1 2.9412 -4.9035 2.3869 40 1 5.1834 0.3917 1.2497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399131334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:07 Heat of formation + Delta-G solvation = -81.992593 kcal Electronic energy + Delta-G solvation = -21176.863482 eV Core-core repulsion = 17955.689675 eV Total energy + Delta-G solvation = -3221.173807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38145 -37.87400 -36.95612 -36.03468 -34.25908 -33.01142 -30.11752 -29.20441 -27.87107 -27.17018 -25.34704 -23.16438 -21.74791 -20.90689 -20.31581 -19.68653 -18.08474 -17.25272 -16.83286 -15.97105 -15.31436 -15.20051 -14.79285 -14.11574 -13.93543 -13.79634 -13.57216 -13.17328 -12.97111 -12.76949 -12.46728 -12.32028 -11.89065 -11.77479 -11.60623 -11.47621 -11.31343 -11.04707 -10.89919 -10.87534 -10.78512 -10.43705 -10.33395 -10.26739 -9.56747 -9.31706 -9.09296 -8.19109 -7.38752 -7.28246 -6.72700 -4.31676 2.36838 2.76184 3.00759 3.08579 3.11236 3.13003 3.23760 3.95523 4.33256 4.56292 4.71719 4.76755 5.03994 5.21006 5.30436 5.43178 5.51407 5.67835 5.74760 5.78946 5.83168 5.89032 5.94736 6.12044 6.24855 6.25032 6.39959 6.53803 6.57570 7.01525 7.10546 7.20408 7.35149 7.39719 7.61033 7.67614 7.91396 8.07477 8.09990 8.21046 8.34456 8.69333 8.93264 9.02432 10.21738 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031973 B = 0.003570 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.518355 B = 7840.565935 C = 8345.992716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.156 4.156 4 C 0.101 3.899 5 H 0.077 0.923 6 N -0.666 5.666 7 C 0.126 3.874 8 C -0.214 4.214 9 C -0.085 4.085 10 C -0.229 4.229 11 C 0.114 3.886 12 C -0.464 4.464 13 H 0.076 0.924 14 C 0.076 3.924 15 N -0.792 5.792 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.168 4.168 21 C -0.073 4.073 22 C 0.474 3.526 23 O -0.485 6.485 24 O -0.520 6.520 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.353 0.647 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.281 0.719 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 16.285 -4.627 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.213 4.213 4 C -0.011 4.011 5 H 0.094 0.906 6 N -0.303 5.303 7 C -0.002 4.002 8 C -0.216 4.216 9 C -0.104 4.104 10 C -0.249 4.249 11 C 0.111 3.889 12 C -0.494 4.494 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.417 5.417 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.188 4.188 21 C -0.092 4.092 22 C 0.313 3.687 23 O -0.369 6.369 24 O -0.333 6.333 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.177 0.823 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 2.019 15.597 -4.621 16.392 hybrid contribution -0.209 -0.490 0.278 0.601 sum 1.810 15.107 -4.343 15.823 Atomic orbital electron populations 1.21918 0.94136 1.02475 1.02381 1.21190 0.96520 0.96654 0.96848 1.22056 1.03172 0.94475 1.01627 1.21111 0.87693 0.92270 0.99978 0.90586 1.60195 1.34268 1.15044 1.20756 1.20654 0.99271 0.93560 0.86676 1.18806 0.93201 0.92296 1.17271 1.20346 0.93747 0.95586 1.00718 1.20905 0.97822 0.92644 1.13491 1.17624 0.91659 0.92513 0.87061 1.19569 0.99565 0.90843 1.39392 0.90539 1.25912 0.94123 1.01639 0.92487 1.69827 1.11924 1.34829 1.25111 0.86381 0.79080 0.81126 0.80197 1.18818 1.20358 1.19055 1.21324 0.96293 0.94897 1.06262 1.20544 0.97040 0.92906 0.98750 1.23638 0.91699 0.80861 0.72470 1.90747 1.69866 1.33116 1.43145 1.84630 1.26080 1.36408 1.86141 0.92381 0.91770 0.91828 0.89883 0.90166 0.92600 0.92596 0.82272 0.91768 0.96115 0.89926 0.89172 0.90828 0.86534 0.89264 0.74103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.96 37.15 0.33 -1.04 16 2 C -0.09 -0.95 2.63 -90.62 -0.24 -1.19 16 3 C -0.16 -1.33 8.67 37.16 0.32 -1.00 16 4 C 0.10 1.29 2.17 -68.86 -0.15 1.14 16 5 H 0.08 0.90 7.80 -51.93 -0.40 0.49 16 6 N -0.67 -10.70 5.83 -109.22 -0.64 -11.34 16 7 C 0.13 2.29 5.49 -4.97 -0.03 2.26 16 8 C -0.21 -4.75 5.42 -104.33 -0.56 -5.31 16 9 C -0.09 -1.89 9.67 -39.66 -0.38 -2.28 16 10 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 11 C 0.11 3.10 5.58 -106.82 -0.60 2.50 16 12 C -0.46 -12.53 9.05 -37.74 -0.34 -12.87 16 13 H 0.08 1.98 7.91 -52.48 -0.42 1.56 16 14 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 15 N -0.79 -20.92 10.95 55.55 0.61 -20.31 16 16 Si 0.91 18.97 29.59 -169.99 -5.03 13.94 16 17 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 C -0.17 -4.53 8.70 -38.87 -0.34 -4.87 16 21 C -0.07 -1.81 9.67 -39.66 -0.38 -2.20 16 22 C 0.47 6.54 7.44 36.00 0.27 6.81 16 23 O -0.48 -8.82 16.68 -18.75 -0.31 -9.14 16 24 O -0.52 -5.05 10.34 -39.25 -0.41 -5.46 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.63 6.21 -51.93 -0.32 0.31 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.71 5.33 -51.93 -0.28 0.44 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.35 5.33 6.16 -39.29 -0.24 5.09 16 33 H 0.06 1.24 7.56 -51.93 -0.39 0.84 16 34 H 0.02 0.34 7.99 -51.93 -0.42 -0.07 16 35 H 0.08 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 38 H 0.12 3.26 6.16 -52.49 -0.32 2.93 16 39 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.40 2.39 9.10 45.56 0.41 2.80 16 LS Contribution 330.49 15.07 4.98 4.98 Total: -1.00 -30.65 330.49 -8.26 -38.91 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.89 Total: 10.64 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -2.57 Total: -22.23 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: -0.03 Total: -31.65 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.72 Total: -14.59 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.65 -8.26 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399131334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.081 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds