Wall clock time and date at job start Mon Mar 30 2020 01:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46881 * 2 1 4 4 C 1.52998 * 109.47187 * 119.99565 * 2 1 3 5 5 H 1.08999 * 109.47515 * 300.00428 * 4 2 1 6 6 N 1.46906 * 109.47089 * 60.00261 * 4 2 1 7 7 C 1.46905 * 110.99969 * 205.00106 * 6 4 2 8 8 C 1.50697 * 109.47043 * 180.02562 * 7 6 4 9 9 C 1.38632 * 119.74815 * 269.73021 * 8 7 6 10 10 C 1.37623 * 120.25129 * 179.72192 * 9 8 7 11 11 C 1.40719 * 119.73884 * 0.56767 * 10 9 8 12 12 C 1.41396 * 120.24234 * 179.68315 * 11 10 9 13 13 H 1.08003 * 119.99895 * 24.40892 * 12 11 10 14 14 C 1.39943 * 119.99968 * 204.40886 * 12 11 10 15 15 N 1.30831 * 120.00012 * 17.85498 * 14 12 11 16 16 Si 1.86797 * 120.00233 * 197.85292 * 14 12 11 17 17 H 1.48503 * 109.47008 * 60.00406 * 16 14 12 18 18 H 1.48496 * 109.47222 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47337 * 300.00436 * 16 14 12 20 20 C 1.40719 * 119.51099 * 359.70205 * 11 10 9 21 21 C 1.37614 * 119.74825 * 0.02562 * 20 11 10 22 22 C 1.50695 * 109.47503 * 180.02562 * 4 2 1 23 23 O 1.20827 * 120.00341 * 240.00584 * 22 4 2 24 24 O 1.34226 * 120.00285 * 59.99506 * 22 4 2 25 25 H 1.09001 * 109.47757 * 299.99875 * 1 2 3 26 26 H 1.08995 * 109.47234 * 60.00301 * 1 2 3 27 27 H 1.09006 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47728 * 239.99343 * 2 1 3 29 29 H 1.09005 * 109.46682 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46895 * 299.99563 * 3 2 1 31 31 H 1.08991 * 109.47302 * 59.99813 * 3 2 1 32 32 H 1.00901 * 110.99483 * 328.95353 * 6 4 2 33 33 H 1.08998 * 109.46744 * 299.99971 * 7 6 4 34 34 H 1.09004 * 109.47121 * 59.99721 * 7 6 4 35 35 H 1.08007 * 119.87920 * 359.97438 * 9 8 7 36 36 H 1.07992 * 120.12959 * 180.27467 * 10 9 8 37 37 H 0.96994 * 119.99718 * 179.97438 * 15 14 12 38 38 H 1.08001 * 120.12404 * 179.97438 * 20 11 10 39 39 H 1.07998 * 119.87535 * 179.97438 * 21 20 11 40 40 H 0.96703 * 117.00392 * 180.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6766 -0.2073 2.1393 6 7 1.5503 -2.1062 1.2493 7 6 1.4875 -2.6423 2.6156 8 6 0.9827 -4.0617 2.5756 9 6 -0.3779 -4.3107 2.6676 10 6 -0.8507 -5.6025 2.6264 11 6 0.0539 -6.6732 2.5023 12 6 -0.4197 -8.0050 2.4657 13 1 -1.4290 -8.2105 2.1408 14 6 0.4193 -9.0569 2.8504 15 7 1.4903 -8.8129 3.5611 16 14 0.0102 -10.8092 2.3491 17 1 -0.0278 -10.9042 0.8676 18 1 1.0485 -11.7303 2.8770 19 1 -1.3148 -11.1862 2.9034 20 6 1.4333 -6.4088 2.4154 21 6 1.8830 -5.1088 2.4531 22 6 3.5469 -0.7206 1.2497 23 8 4.1515 -1.7668 1.2496 24 8 4.2177 0.4420 1.2498 25 1 -0.3635 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 0.6527 -2.1723 0.7933 33 1 2.4829 -2.6234 3.0594 34 1 0.8111 -2.0324 3.2145 35 1 -1.0700 -3.4875 2.7679 36 1 -1.9114 -5.7939 2.6938 37 1 2.0716 -9.5421 3.8280 38 1 2.1363 -7.2231 2.3204 39 1 2.9412 -4.9035 2.3869 40 1 5.1834 0.3917 1.2497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399131334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:06 Heat of formation + Delta-G solvation = -101.409820 kcal Electronic energy + Delta-G solvation = -21177.705476 eV Core-core repulsion = 17955.689675 eV Total energy + Delta-G solvation = -3222.015801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.43665 -39.58291 -38.14599 -37.06729 -35.89825 -34.46713 -31.81719 -31.12071 -29.00244 -28.26314 -26.76479 -24.72841 -22.87227 -22.71819 -21.72903 -20.97705 -19.21341 -19.09783 -17.81830 -17.24252 -17.01858 -16.46881 -15.92927 -15.72935 -15.57826 -15.18961 -14.76450 -14.39610 -14.14889 -14.13266 -13.79954 -13.59739 -13.31776 -13.13676 -12.94672 -12.86479 -12.72269 -12.57251 -12.26974 -12.24874 -11.88008 -11.63885 -11.63362 -11.42674 -11.34769 -11.21891 -10.99744 -9.44503 -9.34065 -9.18695 -8.63229 -6.32910 0.94824 1.16625 1.30773 1.37184 1.48872 1.53028 2.08293 2.20574 2.70221 3.29384 3.69037 3.80925 3.94027 4.16795 4.28125 4.31816 4.37046 4.49113 4.56407 4.63223 4.68408 4.80717 4.88027 5.00777 5.08036 5.11416 5.16541 5.24617 5.39068 5.39631 5.47077 5.57881 5.69893 5.72190 5.89725 6.02400 6.11906 6.27709 6.39261 6.46401 6.72239 6.94824 7.05514 7.13251 8.33713 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031973 B = 0.003570 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.518355 B = 7840.565935 C = 8345.992716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.151 4.151 4 C 0.100 3.900 5 H 0.096 0.904 6 N -0.682 5.682 7 C 0.135 3.865 8 C -0.202 4.202 9 C -0.079 4.079 10 C -0.241 4.241 11 C 0.081 3.919 12 C -0.503 4.503 13 H 0.078 0.922 14 C 0.033 3.967 15 N -0.828 5.828 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.256 1.256 20 C -0.194 4.194 21 C -0.086 4.086 22 C 0.479 3.521 23 O -0.539 6.539 24 O -0.502 6.502 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.359 0.641 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.124 0.876 36 H 0.101 0.899 37 H 0.287 0.713 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.414 18.439 -4.977 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 C -0.208 4.208 4 C -0.011 4.011 5 H 0.114 0.886 6 N -0.319 5.319 7 C 0.007 3.993 8 C -0.203 4.203 9 C -0.098 4.098 10 C -0.261 4.261 11 C 0.079 3.921 12 C -0.532 4.532 13 H 0.096 0.904 14 C -0.182 4.182 15 N -0.453 5.453 16 Si 0.804 3.196 17 H -0.186 1.186 18 H -0.193 1.193 19 H -0.180 1.180 20 C -0.213 4.213 21 C -0.105 4.105 22 C 0.321 3.679 23 O -0.427 6.427 24 O -0.316 6.316 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.184 0.816 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.142 0.858 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 0.963 17.807 -4.975 18.513 hybrid contribution 0.186 -0.914 0.379 1.007 sum 1.149 16.892 -4.595 17.544 Atomic orbital electron populations 1.21912 0.92988 1.02131 1.03658 1.21176 0.97386 0.97222 0.94825 1.22020 1.02819 0.93235 1.02770 1.21270 0.87079 0.90651 1.02147 0.88647 1.59956 1.34940 1.17677 1.19375 1.20480 0.98895 0.91477 0.88416 1.19234 0.93018 0.93916 1.14163 1.20705 0.94362 0.95789 0.98898 1.21170 0.98137 0.93297 1.13461 1.17963 0.92145 0.93727 0.88266 1.19847 1.00281 0.91805 1.41304 0.90427 1.26807 0.93680 1.05913 0.91752 1.69897 1.13012 1.36422 1.26017 0.85244 0.79291 0.75435 0.79672 1.18578 1.19313 1.18035 1.21240 0.96297 0.95273 1.08525 1.20678 0.97543 0.93028 0.99228 1.23882 0.92283 0.80794 0.70945 1.90742 1.70958 1.35073 1.45938 1.84584 1.27728 1.34182 1.85085 0.91321 0.90334 0.92914 0.91181 0.90670 0.91218 0.91719 0.81582 0.93143 0.93325 0.85780 0.88129 0.90251 0.88782 0.89558 0.71953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.96 71.98 0.64 -1.58 16 2 C -0.09 -1.54 2.63 -10.79 -0.03 -1.57 16 3 C -0.15 -2.06 8.67 71.98 0.62 -1.44 16 4 C 0.10 2.31 2.17 44.17 0.10 2.41 16 5 H 0.10 1.89 7.80 -2.39 -0.02 1.88 16 6 N -0.68 -20.76 5.83 -499.45 -2.91 -23.68 16 7 C 0.14 4.67 5.49 85.55 0.47 5.14 16 8 C -0.20 -8.80 5.42 -19.68 -0.11 -8.91 16 9 C -0.08 -3.38 9.67 22.22 0.21 -3.17 16 10 C -0.24 -11.93 9.80 22.73 0.22 -11.71 16 11 C 0.08 4.57 5.58 -21.29 -0.12 4.45 16 12 C -0.50 -28.08 9.05 23.46 0.21 -27.87 16 13 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 14 C 0.03 1.73 5.14 85.26 0.44 2.17 16 15 N -0.83 -45.43 10.95 21.83 0.24 -45.19 16 16 Si 0.98 39.55 29.59 68.60 2.03 41.58 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 18 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 19 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 20 C -0.19 -10.93 8.70 22.73 0.20 -10.74 16 21 C -0.09 -4.36 9.67 22.22 0.21 -4.15 16 22 C 0.48 12.51 7.44 71.23 0.53 13.04 16 23 O -0.54 -19.58 16.68 21.96 0.37 -19.21 16 24 O -0.50 -8.56 10.34 -51.37 -0.53 -9.09 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 0.91 6.21 -2.38 -0.01 0.89 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.10 5.33 -2.38 -0.01 1.09 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.36 10.09 6.16 -89.69 -0.55 9.53 16 33 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 34 H 0.05 1.42 7.99 -2.39 -0.02 1.40 16 35 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 36 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 37 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 38 H 0.09 5.61 6.16 -2.91 -0.02 5.60 16 39 H 0.09 4.33 8.06 -2.91 -0.02 4.30 16 40 H 0.42 4.07 9.10 -74.06 -0.67 3.40 16 Total: -1.00 -69.19 330.49 2.64 -66.55 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -0.17 Total: 32.95 kcal Atomic # 6 Polarization: -47.53 SS G_CDS: 3.61 Total: -43.91 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -2.67 Total: -68.87 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.16 Total: -28.30 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -69.19 2.64 -66.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399131334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.859 kcal (2) G-P(sol) polarization free energy of solvation -69.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds