Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46968 * 2 1 4 4 C 1.53002 * 109.47358 * 120.00465 * 2 1 3 5 5 H 1.08996 * 109.46627 * 300.00122 * 4 2 1 6 6 N 1.46898 * 109.47115 * 179.97438 * 4 2 1 7 7 C 1.46906 * 110.99586 * 154.99756 * 6 4 2 8 8 C 1.50696 * 109.46787 * 179.97438 * 7 6 4 9 9 C 1.38639 * 119.74657 * 90.00290 * 8 7 6 10 10 C 1.37622 * 120.24860 * 180.22798 * 9 8 7 11 11 C 1.40715 * 119.74171 * 359.52374 * 10 9 8 12 12 C 1.41399 * 120.24183 * 180.22515 * 11 10 9 13 13 H 1.07996 * 120.00044 * 204.52621 * 12 11 10 14 14 C 1.39950 * 119.99773 * 24.53568 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.71280 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.70913 * 14 12 11 17 17 H 1.48502 * 109.46794 * 89.99841 * 16 14 12 18 18 H 1.48499 * 109.47177 * 209.99507 * 16 14 12 19 19 H 1.48492 * 109.47228 * 330.00168 * 16 14 12 20 20 C 1.40715 * 119.51175 * 0.47555 * 11 10 9 21 21 C 1.37615 * 119.74353 * 359.75047 * 20 11 10 22 22 C 1.50698 * 109.46818 * 59.99850 * 4 2 1 23 23 O 1.20823 * 120.00318 * 120.00657 * 22 4 2 24 24 O 1.34234 * 120.00292 * 299.99729 * 22 4 2 25 25 H 1.08995 * 109.46909 * 300.00156 * 1 2 3 26 26 H 1.09001 * 109.46669 * 59.99980 * 1 2 3 27 27 H 1.08996 * 109.46849 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47115 * 240.00495 * 2 1 3 29 29 H 1.09002 * 109.47264 * 60.00557 * 3 2 1 30 30 H 1.09002 * 109.46862 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47565 * 299.99689 * 3 2 1 32 32 H 1.00899 * 111.00194 * 278.94913 * 6 4 2 33 33 H 1.08997 * 109.46726 * 60.00168 * 7 6 4 34 34 H 1.08996 * 109.47313 * 300.00030 * 7 6 4 35 35 H 1.08000 * 119.87572 * 359.95464 * 9 8 7 36 36 H 1.08002 * 120.12750 * 179.72105 * 10 9 8 37 37 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 38 38 H 1.08000 * 120.12426 * 179.73134 * 20 11 10 39 39 H 1.08002 * 119.87199 * 180.02562 * 21 20 11 40 40 H 0.96696 * 117.00442 * 180.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2076 2.1391 6 7 3.5091 -0.7219 1.2488 7 6 4.0358 -0.8414 2.6150 8 6 5.5422 -0.8391 2.5745 9 6 6.2307 0.3611 2.6607 10 6 7.6063 0.3757 2.6201 11 6 8.3140 -0.8346 2.5007 12 6 9.7275 -0.8324 2.4627 13 1 10.2563 -1.6474 1.9912 14 6 10.4411 0.2260 3.0365 15 7 9.8550 1.0213 3.8940 16 14 12.2306 0.5030 2.5777 17 1 12.3063 1.4136 1.4072 18 1 12.9474 1.1128 3.7264 19 1 12.8607 -0.7972 2.2349 20 6 7.6046 -2.0468 2.4140 21 6 6.2290 -2.0370 2.4519 22 6 1.5378 -2.1421 1.2490 23 8 2.3228 -3.0606 1.2490 24 8 0.2180 -2.3874 1.2491 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 3.8703 -1.4546 0.6566 33 1 3.6860 -1.7735 3.0589 34 1 3.6867 -0.0003 3.2139 35 1 5.6855 1.2886 2.7556 36 1 8.1406 1.3122 2.6829 37 1 10.3496 1.7551 4.2914 38 1 8.1376 -2.9811 2.3177 39 1 5.6824 -2.9661 2.3859 40 1 -0.0562 -3.3147 1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399131335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = -88.480108 kcal Electronic energy + Delta-G solvation = -21173.202575 eV Core-core repulsion = 17951.747448 eV Total energy + Delta-G solvation = -3221.455127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.63873 -37.81831 -36.79637 -36.27106 -34.29120 -33.06184 -30.16599 -29.20711 -27.62405 -27.05665 -25.33848 -23.14182 -21.82651 -20.91348 -20.33914 -19.69374 -18.23980 -17.27947 -17.19565 -15.91333 -15.40908 -15.25422 -14.61638 -14.08414 -13.94804 -13.79786 -13.52338 -13.39513 -12.69135 -12.49177 -12.32079 -12.12934 -11.98388 -11.86639 -11.68774 -11.47812 -11.23857 -11.08764 -10.88648 -10.81176 -10.77104 -10.55851 -10.41105 -10.32628 -9.56935 -9.33248 -9.12971 -8.35791 -7.40631 -7.28073 -6.74215 -4.32797 2.11463 2.75292 2.98101 3.08227 3.12085 3.12780 3.19671 3.94771 4.27265 4.67600 4.71363 4.87837 5.14620 5.27562 5.33183 5.57071 5.67712 5.73475 5.83466 5.87175 5.90817 6.00077 6.14165 6.26587 6.28560 6.38710 6.41862 6.47401 6.51766 6.98994 7.09770 7.15064 7.33522 7.38268 7.54945 7.65956 7.80347 7.91978 8.09021 8.18011 8.33763 8.67726 8.92487 9.01170 10.20297 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033266 B = 0.003529 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.493939 B = 7932.737601 C = 8425.122242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.077 4.077 3 C -0.137 4.137 4 C 0.097 3.903 5 H 0.112 0.888 6 N -0.649 5.649 7 C 0.120 3.880 8 C -0.215 4.215 9 C -0.078 4.078 10 C -0.169 4.169 11 C 0.114 3.886 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.793 5.793 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.228 4.228 21 C -0.081 4.081 22 C 0.447 3.553 23 O -0.513 6.513 24 O -0.513 6.513 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.353 0.647 33 H 0.025 0.975 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.280 0.720 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.677 -0.033 -4.841 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.096 4.096 3 C -0.194 4.194 4 C -0.016 4.016 5 H 0.130 0.870 6 N -0.281 5.281 7 C -0.008 4.008 8 C -0.216 4.216 9 C -0.097 4.097 10 C -0.188 4.188 11 C 0.111 3.889 12 C -0.493 4.493 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.418 5.418 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.248 4.248 21 C -0.099 4.099 22 C 0.287 3.713 23 O -0.400 6.400 24 O -0.324 6.324 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.174 0.826 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -15.220 1.004 -4.676 15.954 hybrid contribution 0.487 -1.521 0.165 1.606 sum -14.733 -0.517 -4.511 15.417 Atomic orbital electron populations 1.22103 0.94507 1.03335 1.01683 1.20994 0.95496 0.97409 0.95740 1.21703 1.03146 0.93655 1.00883 1.21798 0.90712 0.87220 1.01849 0.87034 1.61131 1.01112 1.52804 1.13071 1.20691 0.93775 0.98719 0.87583 1.18793 0.91718 0.93786 1.17347 1.20490 0.94400 0.95203 0.99587 1.21304 0.92301 0.98567 1.06623 1.17633 0.93204 0.90761 0.87286 1.19619 0.91567 1.05483 1.32621 0.90499 1.25908 1.00795 0.94700 0.92729 1.69833 1.38646 1.13861 1.19457 0.86322 0.81849 0.79600 0.78999 1.19261 1.20356 1.18658 1.20940 0.93184 0.96869 1.13767 1.20406 0.94263 0.95440 0.99835 1.25404 0.79932 0.94753 0.71195 1.90743 1.56828 1.46971 1.45500 1.84724 1.26859 1.35460 1.85324 0.92576 0.92646 0.90668 0.91016 0.93003 0.90497 0.93141 0.82576 0.95711 0.91712 0.89428 0.86517 0.90915 0.89176 0.89711 0.74394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.67 37.16 0.32 -1.07 16 2 C -0.08 -0.81 2.68 -90.62 -0.24 -1.06 16 3 C -0.14 -1.46 9.04 37.16 0.34 -1.12 16 4 C 0.10 1.20 2.11 -68.87 -0.15 1.05 16 5 H 0.11 1.28 7.80 -51.93 -0.41 0.88 16 6 N -0.65 -10.09 5.32 -109.22 -0.58 -10.67 16 7 C 0.12 2.12 5.49 -4.97 -0.03 2.09 16 8 C -0.21 -4.70 5.41 -104.33 -0.56 -5.26 16 9 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 10 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 11 C 0.11 3.07 5.57 -106.82 -0.60 2.48 16 12 C -0.46 -12.47 9.06 -37.74 -0.34 -12.81 16 13 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 14 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 15 N -0.79 -20.61 10.95 55.55 0.61 -20.00 16 16 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 20 C -0.23 -5.75 9.80 -38.87 -0.38 -6.13 16 21 C -0.08 -1.86 9.67 -39.67 -0.38 -2.25 16 22 C 0.45 5.67 7.39 36.00 0.27 5.93 16 23 O -0.51 -8.37 16.06 -18.75 -0.30 -8.67 16 24 O -0.51 -4.70 10.34 -39.27 -0.41 -5.11 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.66 5.32 -51.93 -0.28 0.39 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.98 7.60 -51.93 -0.39 0.59 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.35 6.00 7.74 -39.29 -0.30 5.70 16 33 H 0.02 0.45 7.56 -51.93 -0.39 0.06 16 34 H 0.06 1.07 8.00 -51.93 -0.42 0.66 16 35 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 37 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 38 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.40 2.18 9.10 45.56 0.41 2.60 16 LS Contribution 332.37 15.07 5.01 5.01 Total: -1.00 -29.17 332.37 -8.30 -37.47 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.42 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -2.57 Total: -23.23 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.03 Total: -30.67 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.71 Total: -13.78 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.17 -8.30 -37.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399131335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.007 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds