Wall clock time and date at job start Mon Mar 30 2020 01:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46968 * 2 1 4 4 C 1.53002 * 109.47358 * 120.00465 * 2 1 3 5 5 H 1.08996 * 109.46627 * 300.00122 * 4 2 1 6 6 N 1.46898 * 109.47115 * 179.97438 * 4 2 1 7 7 C 1.46906 * 110.99586 * 154.99756 * 6 4 2 8 8 C 1.50696 * 109.46787 * 179.97438 * 7 6 4 9 9 C 1.38639 * 119.74657 * 90.00290 * 8 7 6 10 10 C 1.37622 * 120.24860 * 180.22798 * 9 8 7 11 11 C 1.40715 * 119.74171 * 359.52374 * 10 9 8 12 12 C 1.41399 * 120.24183 * 180.22515 * 11 10 9 13 13 H 1.07996 * 120.00044 * 204.52621 * 12 11 10 14 14 C 1.39950 * 119.99773 * 24.53568 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.71280 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.70913 * 14 12 11 17 17 H 1.48502 * 109.46794 * 89.99841 * 16 14 12 18 18 H 1.48499 * 109.47177 * 209.99507 * 16 14 12 19 19 H 1.48492 * 109.47228 * 330.00168 * 16 14 12 20 20 C 1.40715 * 119.51175 * 0.47555 * 11 10 9 21 21 C 1.37615 * 119.74353 * 359.75047 * 20 11 10 22 22 C 1.50698 * 109.46818 * 59.99850 * 4 2 1 23 23 O 1.20823 * 120.00318 * 120.00657 * 22 4 2 24 24 O 1.34234 * 120.00292 * 299.99729 * 22 4 2 25 25 H 1.08995 * 109.46909 * 300.00156 * 1 2 3 26 26 H 1.09001 * 109.46669 * 59.99980 * 1 2 3 27 27 H 1.08996 * 109.46849 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47115 * 240.00495 * 2 1 3 29 29 H 1.09002 * 109.47264 * 60.00557 * 3 2 1 30 30 H 1.09002 * 109.46862 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47565 * 299.99689 * 3 2 1 32 32 H 1.00899 * 111.00194 * 278.94913 * 6 4 2 33 33 H 1.08997 * 109.46726 * 60.00168 * 7 6 4 34 34 H 1.08996 * 109.47313 * 300.00030 * 7 6 4 35 35 H 1.08000 * 119.87572 * 359.95464 * 9 8 7 36 36 H 1.08002 * 120.12750 * 179.72105 * 10 9 8 37 37 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 38 38 H 1.08000 * 120.12426 * 179.73134 * 20 11 10 39 39 H 1.08002 * 119.87199 * 180.02562 * 21 20 11 40 40 H 0.96696 * 117.00442 * 180.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2076 2.1391 6 7 3.5091 -0.7219 1.2488 7 6 4.0358 -0.8414 2.6150 8 6 5.5422 -0.8391 2.5745 9 6 6.2307 0.3611 2.6607 10 6 7.6063 0.3757 2.6201 11 6 8.3140 -0.8346 2.5007 12 6 9.7275 -0.8324 2.4627 13 1 10.2563 -1.6474 1.9912 14 6 10.4411 0.2260 3.0365 15 7 9.8550 1.0213 3.8940 16 14 12.2306 0.5030 2.5777 17 1 12.3063 1.4136 1.4072 18 1 12.9474 1.1128 3.7264 19 1 12.8607 -0.7972 2.2349 20 6 7.6046 -2.0468 2.4140 21 6 6.2290 -2.0370 2.4519 22 6 1.5378 -2.1421 1.2490 23 8 2.3228 -3.0606 1.2490 24 8 0.2180 -2.3874 1.2491 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 3.8703 -1.4546 0.6566 33 1 3.6860 -1.7735 3.0589 34 1 3.6867 -0.0003 3.2139 35 1 5.6855 1.2886 2.7556 36 1 8.1406 1.3122 2.6829 37 1 10.3496 1.7551 4.2914 38 1 8.1376 -2.9811 2.3177 39 1 5.6824 -2.9661 2.3859 40 1 -0.0562 -3.3147 1.2494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399131335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:09 Heat of formation + Delta-G solvation = -106.078771 kcal Electronic energy + Delta-G solvation = -21173.965710 eV Core-core repulsion = 17951.747448 eV Total energy + Delta-G solvation = -3222.218262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.64069 -39.56194 -37.93528 -37.22362 -35.90602 -34.52839 -31.86159 -31.11569 -28.95951 -28.00381 -26.76680 -24.68824 -22.92544 -22.71854 -21.77640 -20.95066 -19.22239 -19.18454 -18.24461 -17.20813 -16.85499 -16.54398 -15.93558 -15.67590 -15.56204 -15.08634 -14.79341 -14.57443 -14.22754 -13.80802 -13.57720 -13.46915 -13.39913 -13.16077 -12.86795 -12.80830 -12.76998 -12.65952 -12.27114 -12.21052 -11.86453 -11.68078 -11.61097 -11.49866 -11.37802 -11.21551 -11.01420 -9.63531 -9.33943 -9.18850 -8.63234 -6.33076 0.94531 1.13024 1.16043 1.38293 1.51504 1.51694 2.10838 2.21543 2.68068 3.18919 3.77924 3.79657 4.00350 4.21521 4.26845 4.37089 4.45232 4.47916 4.57810 4.62198 4.78962 4.80062 4.96352 5.06288 5.15748 5.16837 5.19256 5.34671 5.39406 5.47412 5.53535 5.57178 5.67724 5.72006 5.87090 6.00655 6.11328 6.20095 6.31610 6.40368 6.71753 6.95221 6.95544 7.04935 8.33947 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033266 B = 0.003529 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.493939 B = 7932.737601 C = 8425.122242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.072 4.072 3 C -0.134 4.134 4 C 0.096 3.904 5 H 0.127 0.873 6 N -0.652 5.652 7 C 0.129 3.871 8 C -0.201 4.201 9 C -0.079 4.079 10 C -0.190 4.190 11 C 0.082 3.918 12 C -0.504 4.504 13 H 0.072 0.928 14 C 0.036 3.964 15 N -0.824 5.824 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.266 1.266 19 H -0.261 1.261 20 C -0.246 4.246 21 C -0.085 4.085 22 C 0.456 3.544 23 O -0.554 6.554 24 O -0.498 6.498 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.344 0.656 33 H 0.023 0.977 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.288 0.712 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.537 0.539 -5.144 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.091 4.091 3 C -0.191 4.191 4 C -0.016 4.016 5 H 0.145 0.855 6 N -0.283 5.283 7 C 0.001 3.999 8 C -0.202 4.202 9 C -0.098 4.098 10 C -0.210 4.210 11 C 0.080 3.920 12 C -0.533 4.533 13 H 0.090 0.910 14 C -0.179 4.179 15 N -0.450 5.450 16 Si 0.803 3.197 17 H -0.186 1.186 18 H -0.191 1.191 19 H -0.184 1.184 20 C -0.266 4.266 21 C -0.103 4.103 22 C 0.298 3.702 23 O -0.445 6.445 24 O -0.310 6.310 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.041 0.959 34 H 0.101 0.899 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -17.136 1.571 -4.979 17.914 hybrid contribution 0.821 -1.740 0.251 1.940 sum -16.316 -0.168 -4.728 16.988 Atomic orbital electron populations 1.22054 0.92645 1.03656 1.02663 1.20979 0.96861 0.96891 0.94392 1.21667 1.01519 0.93962 1.01964 1.21900 0.88607 0.87627 1.03511 0.85528 1.61022 1.03486 1.52466 1.11304 1.20566 0.90737 0.99420 0.89182 1.19216 0.94259 0.92666 1.14100 1.20738 0.93543 0.96801 0.98726 1.21290 0.93567 0.97741 1.08380 1.17959 0.93920 0.91679 0.88478 1.19843 0.92103 1.06865 1.34524 0.91007 1.26742 1.05333 0.93813 0.91965 1.69875 1.40649 1.14405 1.20035 0.85200 0.75972 0.79499 0.78994 1.18601 1.19060 1.18438 1.21113 0.94337 0.96542 1.14593 1.20639 0.93607 0.96801 0.99293 1.25258 0.80568 0.94247 0.70153 1.90742 1.58041 1.48070 1.47643 1.84656 1.24685 1.37297 1.84351 0.91818 0.91502 0.90634 0.91774 0.92259 0.92942 0.91789 0.83616 0.95886 0.89941 0.87202 0.88078 0.90093 0.89089 0.88053 0.72094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.67 71.98 0.62 -1.54 16 2 C -0.07 -1.34 2.68 -10.79 -0.03 -1.37 16 3 C -0.13 -2.56 9.04 71.98 0.65 -1.91 16 4 C 0.10 2.14 2.11 44.17 0.09 2.23 16 5 H 0.13 2.49 7.80 -2.39 -0.02 2.47 16 6 N -0.65 -19.29 5.32 -499.47 -2.66 -21.95 16 7 C 0.13 4.34 5.49 85.55 0.47 4.81 16 8 C -0.20 -8.66 5.41 -19.68 -0.11 -8.76 16 9 C -0.08 -3.70 9.67 22.22 0.21 -3.48 16 10 C -0.19 -10.25 8.70 22.73 0.20 -10.05 16 11 C 0.08 4.60 5.57 -21.29 -0.12 4.48 16 12 C -0.50 -28.21 9.06 23.46 0.21 -28.00 16 13 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 14 C 0.04 1.88 5.14 85.26 0.44 2.32 16 15 N -0.82 -43.85 10.95 21.83 0.24 -43.61 16 16 Si 0.98 39.08 29.59 68.60 2.03 41.11 16 17 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 18 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 C -0.25 -12.80 9.80 22.73 0.22 -12.58 16 21 C -0.08 -3.93 9.67 22.21 0.21 -3.71 16 22 C 0.46 10.54 7.39 71.24 0.53 11.06 16 23 O -0.55 -17.35 16.06 21.97 0.35 -17.00 16 24 O -0.50 -7.57 10.34 -51.46 -0.53 -8.10 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 1.07 5.32 -2.39 -0.01 1.06 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.27 7.60 -2.39 -0.02 1.25 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.34 11.42 7.74 -89.69 -0.69 10.73 16 33 H 0.02 0.79 7.56 -2.39 -0.02 0.77 16 34 H 0.08 2.50 8.00 -2.39 -0.02 2.48 16 35 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 36 H 0.10 5.67 6.16 -2.91 -0.02 5.66 16 37 H 0.29 13.80 8.30 -92.70 -0.77 13.03 16 38 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.42 3.27 9.10 -74.06 -0.67 2.60 16 Total: -1.00 -64.60 332.37 2.73 -61.88 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.31 Total: 34.16 kcal Atomic # 6 Polarization: -50.11 SS G_CDS: 3.61 Total: -46.49 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -2.42 Total: -65.55 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.18 Total: -25.10 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -64.60 2.73 -61.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399131335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.204 kcal (2) G-P(sol) polarization free energy of solvation -64.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds