Wall clock time and date at job start Mon Mar 30 2020 01:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47147 * 2 1 4 4 C 1.53007 * 109.47083 * 176.75097 * 3 2 1 5 5 H 1.08998 * 109.46904 * 305.67489 * 4 3 2 6 6 O 1.42894 * 109.47167 * 65.67525 * 4 3 2 7 7 C 1.42904 * 113.99830 * 247.20863 * 6 4 3 8 8 C 1.50697 * 109.46984 * 185.67839 * 4 3 2 9 9 O 1.21283 * 119.99524 * 244.99615 * 8 4 3 10 10 N 1.34780 * 120.00496 * 64.99815 * 8 4 3 11 11 C 1.39126 * 120.00004 * 183.78226 * 10 8 4 12 12 C 1.38638 * 120.28388 * 331.06699 * 11 10 8 13 13 C 1.38230 * 120.03384 * 180.29933 * 12 11 10 14 14 C 1.38876 * 120.60990 * 359.43872 * 13 12 11 15 15 C 1.36463 * 120.57617 * 0.56296 * 14 13 12 16 16 C 1.40734 * 119.94700 * 359.72005 * 15 14 13 17 17 C 1.41072 * 120.30311 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99903 * 152.72360 * 17 16 15 19 19 C 1.39954 * 119.99934 * 332.72437 * 17 16 15 20 20 N 1.30852 * 119.99823 * 347.19396 * 19 17 16 21 21 Si 1.86794 * 119.99922 * 167.19253 * 19 17 16 22 22 H 1.48498 * 109.47439 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47429 * 120.00117 * 21 19 17 24 24 H 1.48503 * 109.47185 * 240.00160 * 21 19 17 25 25 H 1.09004 * 109.47369 * 59.99684 * 1 2 3 26 26 H 1.08994 * 109.47300 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46867 * 299.99949 * 1 2 3 28 28 H 1.09003 * 109.46651 * 239.99610 * 2 1 3 29 29 H 1.08997 * 109.47000 * 120.00292 * 2 1 3 30 30 H 1.09000 * 109.47627 * 56.75023 * 3 2 1 31 31 H 1.09002 * 109.47135 * 296.74277 * 3 2 1 32 32 H 1.08993 * 109.47067 * 304.57964 * 7 6 4 33 33 H 1.08992 * 109.47396 * 64.58258 * 7 6 4 34 34 H 1.09009 * 109.46957 * 184.58398 * 7 6 4 35 35 H 0.96998 * 119.99477 * 3.78291 * 10 8 4 36 36 H 1.08000 * 119.99181 * 0.02562 * 12 11 10 37 37 H 1.07994 * 119.69708 * 179.69928 * 13 12 11 38 38 H 1.07995 * 119.70902 * 180.30346 * 14 13 12 39 39 H 1.08001 * 120.02939 * 179.74844 * 15 14 13 40 40 H 0.97008 * 119.99906 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5679 1.4432 0.0818 5 1 3.8857 0.8599 0.9460 6 8 4.1088 0.8654 -1.1079 7 6 4.7698 -0.3842 -0.8986 8 6 4.0627 2.8597 0.2222 9 8 4.7311 3.3585 -0.6582 10 7 3.7625 3.5721 1.3263 11 6 4.1518 4.9043 1.4217 12 6 5.2866 5.3500 0.7617 13 6 5.6722 6.6734 0.8650 14 6 4.9257 7.5708 1.6174 15 6 3.8045 7.1590 2.2773 16 6 3.3933 5.8157 2.1933 17 6 2.2351 5.3820 2.8720 18 1 1.6723 4.5404 2.4961 19 6 1.8155 6.0424 4.0324 20 7 2.6155 6.8887 4.6291 21 14 0.1136 5.7155 4.7294 22 1 -0.5890 4.7242 3.8757 23 1 0.2380 5.1800 6.1089 24 1 -0.6612 6.9820 4.7582 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6299 1.9729 0.8594 31 1 1.7251 1.9391 -0.9178 32 1 5.5453 -0.2628 -0.1425 33 1 4.0460 -1.1260 -0.5610 34 1 5.2222 -0.7169 -1.8329 35 1 3.2749 3.1559 2.0543 36 1 5.8723 4.6620 0.1700 37 1 6.5599 7.0137 0.3526 38 1 5.2376 8.6025 1.6843 39 1 3.2328 7.8635 2.8633 40 1 2.3248 7.3462 5.4336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410828421.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:22 Heat of formation + Delta-G solvation = -73.201327 kcal Electronic energy + Delta-G solvation = -21700.751541 eV Core-core repulsion = 18479.958952 eV Total energy + Delta-G solvation = -3220.792589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88739 -38.06340 -36.74898 -34.70449 -33.68931 -33.63198 -30.27683 -29.58562 -28.11379 -26.51559 -25.33613 -24.25536 -21.62362 -21.19511 -20.69225 -19.36057 -17.48481 -17.01323 -16.83702 -15.94004 -15.42144 -15.15098 -14.83505 -14.52894 -14.20790 -13.96443 -13.36163 -13.29192 -12.95455 -12.66896 -12.38156 -12.32346 -12.05814 -11.74836 -11.44994 -11.38039 -11.20688 -11.16676 -11.10020 -10.93380 -10.63952 -10.49825 -10.15765 -9.83049 -9.70211 -9.28707 -9.17846 -8.55777 -7.37944 -6.99222 -6.68289 -4.41075 2.60981 2.85626 3.02465 3.05803 3.19809 3.30191 3.56144 3.86366 4.22246 4.61224 4.79955 4.85668 5.00111 5.08732 5.25160 5.32680 5.40825 5.54197 5.62222 5.63796 5.67368 5.78337 5.84866 6.07329 6.15776 6.28144 6.36348 6.54006 6.62257 6.90705 7.04589 7.10800 7.20217 7.30309 7.64807 7.73221 7.99171 8.11602 8.12465 8.43299 8.55988 8.81184 8.84119 9.04564 10.14711 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.006339 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.958138 B = 4415.828194 C = 6182.087929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.129 4.129 4 C 0.076 3.924 5 H 0.084 0.916 6 O -0.356 6.356 7 C 0.028 3.972 8 C 0.487 3.513 9 O -0.521 6.521 10 N -0.634 5.634 11 C 0.016 3.984 12 C -0.096 4.096 13 C -0.223 4.223 14 C -0.116 4.116 15 C -0.148 4.148 16 C 0.100 3.900 17 C -0.467 4.467 18 H 0.075 0.925 19 C 0.076 3.924 20 N -0.796 5.796 21 Si 0.907 3.093 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.272 1.272 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.403 0.597 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.726 -12.059 -2.659 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.167 4.167 4 C 0.015 3.985 5 H 0.102 0.898 6 O -0.273 6.273 7 C -0.069 4.069 8 C 0.272 3.728 9 O -0.398 6.398 10 N -0.277 5.277 11 C -0.077 4.077 12 C -0.116 4.116 13 C -0.243 4.243 14 C -0.135 4.135 15 C -0.168 4.168 16 C 0.096 3.904 17 C -0.497 4.497 18 H 0.093 0.907 19 C -0.141 4.141 20 N -0.422 5.422 21 Si 0.732 3.268 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.197 1.197 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.238 0.762 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.140 0.860 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.270 -11.513 -3.279 12.185 hybrid contribution -0.924 -0.380 1.088 1.477 sum -3.194 -11.893 -2.191 12.508 Atomic orbital electron populations 1.21763 0.95558 1.01418 1.02222 1.21519 0.96177 0.96255 1.01943 1.21974 0.92482 0.98032 1.04250 1.22039 0.94521 0.92664 0.89316 0.89806 1.88022 1.73966 1.35866 1.29476 1.22909 0.96020 0.85588 1.02353 1.20671 0.81772 0.87962 0.82367 1.90624 1.37852 1.70646 1.40643 1.42863 1.55802 1.11018 1.18050 1.17777 0.97353 0.82514 1.10105 1.20856 0.95167 0.95977 0.99572 1.20351 1.02442 0.94167 1.07364 1.20490 0.96860 0.97497 0.98626 1.20936 0.98105 0.95625 1.02108 1.17406 0.91415 0.90427 0.91140 1.19331 1.08418 1.14472 1.07502 0.90653 1.25855 0.98305 0.93616 0.96325 1.69820 1.35042 1.21419 1.15878 0.86275 0.82145 0.79392 0.78990 1.18490 1.20023 1.19738 0.92590 0.92887 0.92460 0.91584 0.92180 0.89890 0.90305 0.93969 0.94000 0.89545 0.76210 0.86471 0.89228 0.89418 0.85960 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.12 -1.25 5.45 -26.73 -0.15 -1.40 16 3 C -0.13 -1.69 4.89 -26.73 -0.13 -1.82 16 4 C 0.08 1.13 2.64 -27.88 -0.07 1.06 16 5 H 0.08 1.02 7.59 -51.93 -0.39 0.62 16 6 O -0.36 -5.50 9.50 -55.09 -0.52 -6.03 16 7 C 0.03 0.31 10.61 101.05 1.07 1.38 16 8 C 0.49 9.62 7.05 -10.99 -0.08 9.54 16 9 O -0.52 -12.36 13.60 -14.31 -0.19 -12.56 16 10 N -0.63 -13.00 4.90 -9.48 -0.05 -13.04 16 11 C 0.02 0.40 6.43 -83.17 -0.53 -0.14 16 12 C -0.10 -2.37 8.74 -39.44 -0.34 -2.71 16 13 C -0.22 -5.33 10.04 -39.35 -0.39 -5.73 16 14 C -0.12 -2.79 9.97 -39.99 -0.40 -3.19 16 15 C -0.15 -3.82 8.61 -39.28 -0.34 -4.15 16 16 C 0.10 2.58 5.57 -106.65 -0.59 1.98 16 17 C -0.47 -11.51 8.37 -37.87 -0.32 -11.82 16 18 H 0.08 1.74 7.26 -52.49 -0.38 1.36 16 19 C 0.08 1.81 5.22 -17.33 -0.09 1.72 16 20 N -0.80 -19.73 10.85 55.55 0.60 -19.13 16 21 Si 0.91 17.70 29.58 -169.99 -5.03 12.67 16 22 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.68 7.41 -51.93 -0.38 0.30 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.08 7.86 -51.93 -0.41 0.67 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.44 8.10 -51.93 -0.42 0.02 16 33 H 0.04 0.37 7.38 -51.93 -0.38 -0.02 16 34 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 35 H 0.40 7.30 7.55 -40.82 -0.31 6.99 16 36 H 0.12 2.91 5.78 -52.49 -0.30 2.61 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 39 H 0.12 3.22 6.17 -52.49 -0.32 2.90 16 40 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -29.95 331.62 -8.02 -37.97 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.82 Total: 11.50 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -2.00 Total: -16.38 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.56 Total: -32.17 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.72 Total: -18.58 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.95 -8.02 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410828421.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.234 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds