Wall clock time and date at job start Mon Mar 30 2020 01:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47147 * 2 1 4 4 C 1.53007 * 109.47083 * 176.75097 * 3 2 1 5 5 H 1.08998 * 109.46904 * 305.67489 * 4 3 2 6 6 O 1.42894 * 109.47167 * 65.67525 * 4 3 2 7 7 C 1.42904 * 113.99830 * 247.20863 * 6 4 3 8 8 C 1.50697 * 109.46984 * 185.67839 * 4 3 2 9 9 O 1.21283 * 119.99524 * 244.99615 * 8 4 3 10 10 N 1.34780 * 120.00496 * 64.99815 * 8 4 3 11 11 C 1.39126 * 120.00004 * 183.78226 * 10 8 4 12 12 C 1.38638 * 120.28388 * 331.06699 * 11 10 8 13 13 C 1.38230 * 120.03384 * 180.29933 * 12 11 10 14 14 C 1.38876 * 120.60990 * 359.43872 * 13 12 11 15 15 C 1.36463 * 120.57617 * 0.56296 * 14 13 12 16 16 C 1.40734 * 119.94700 * 359.72005 * 15 14 13 17 17 C 1.41072 * 120.30311 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99903 * 152.72360 * 17 16 15 19 19 C 1.39954 * 119.99934 * 332.72437 * 17 16 15 20 20 N 1.30852 * 119.99823 * 347.19396 * 19 17 16 21 21 Si 1.86794 * 119.99922 * 167.19253 * 19 17 16 22 22 H 1.48498 * 109.47439 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47429 * 120.00117 * 21 19 17 24 24 H 1.48503 * 109.47185 * 240.00160 * 21 19 17 25 25 H 1.09004 * 109.47369 * 59.99684 * 1 2 3 26 26 H 1.08994 * 109.47300 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46867 * 299.99949 * 1 2 3 28 28 H 1.09003 * 109.46651 * 239.99610 * 2 1 3 29 29 H 1.08997 * 109.47000 * 120.00292 * 2 1 3 30 30 H 1.09000 * 109.47627 * 56.75023 * 3 2 1 31 31 H 1.09002 * 109.47135 * 296.74277 * 3 2 1 32 32 H 1.08993 * 109.47067 * 304.57964 * 7 6 4 33 33 H 1.08992 * 109.47396 * 64.58258 * 7 6 4 34 34 H 1.09009 * 109.46957 * 184.58398 * 7 6 4 35 35 H 0.96998 * 119.99477 * 3.78291 * 10 8 4 36 36 H 1.08000 * 119.99181 * 0.02562 * 12 11 10 37 37 H 1.07994 * 119.69708 * 179.69928 * 13 12 11 38 38 H 1.07995 * 119.70902 * 180.30346 * 14 13 12 39 39 H 1.08001 * 120.02939 * 179.74844 * 15 14 13 40 40 H 0.97008 * 119.99906 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5679 1.4432 0.0818 5 1 3.8857 0.8599 0.9460 6 8 4.1088 0.8654 -1.1079 7 6 4.7698 -0.3842 -0.8986 8 6 4.0627 2.8597 0.2222 9 8 4.7311 3.3585 -0.6582 10 7 3.7625 3.5721 1.3263 11 6 4.1518 4.9043 1.4217 12 6 5.2866 5.3500 0.7617 13 6 5.6722 6.6734 0.8650 14 6 4.9257 7.5708 1.6174 15 6 3.8045 7.1590 2.2773 16 6 3.3933 5.8157 2.1933 17 6 2.2351 5.3820 2.8720 18 1 1.6723 4.5404 2.4961 19 6 1.8155 6.0424 4.0324 20 7 2.6155 6.8887 4.6291 21 14 0.1136 5.7155 4.7294 22 1 -0.5890 4.7242 3.8757 23 1 0.2380 5.1800 6.1089 24 1 -0.6612 6.9820 4.7582 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6299 1.9729 0.8594 31 1 1.7251 1.9391 -0.9178 32 1 5.5453 -0.2628 -0.1425 33 1 4.0460 -1.1260 -0.5610 34 1 5.2222 -0.7169 -1.8329 35 1 3.2749 3.1559 2.0543 36 1 5.8723 4.6620 0.1700 37 1 6.5599 7.0137 0.3526 38 1 5.2376 8.6025 1.6843 39 1 3.2328 7.8635 2.8633 40 1 2.3248 7.3462 5.4336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410828421.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:22 Heat of formation + Delta-G solvation = -89.842038 kcal Electronic energy + Delta-G solvation = -21701.473137 eV Core-core repulsion = 18479.958952 eV Total energy + Delta-G solvation = -3221.514185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44054 -39.52816 -38.33794 -35.81444 -35.51696 -35.19326 -31.60555 -31.39072 -29.73451 -27.40511 -27.13411 -25.50344 -23.35331 -22.46253 -22.11834 -21.01662 -19.26798 -18.59841 -18.16516 -17.39955 -16.87362 -16.59969 -16.09437 -15.85592 -15.63153 -15.49201 -14.76850 -14.57295 -14.36368 -14.16826 -14.03308 -13.55213 -13.36293 -13.12872 -12.98797 -12.83306 -12.74878 -12.34405 -12.22676 -12.11821 -12.01991 -11.83628 -11.54727 -11.50310 -11.13484 -11.06242 -10.85944 -10.14052 -9.31940 -8.83713 -8.50276 -6.30639 0.82953 1.05635 1.43596 1.53569 1.57333 1.74377 2.14546 2.22746 2.78434 3.01779 3.63799 3.76240 3.82447 3.91262 4.19805 4.26838 4.49745 4.51987 4.56666 4.63174 4.66972 4.74613 4.77096 4.83996 4.93481 5.03722 5.09007 5.22313 5.24069 5.30897 5.32710 5.44947 5.46533 5.78405 5.83827 6.04241 6.17379 6.20360 6.26528 6.66301 6.73764 6.95468 7.01293 7.38551 8.37264 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.006339 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.958138 B = 4415.828194 C = 6182.087929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.126 4.126 4 C 0.088 3.912 5 H 0.117 0.883 6 O -0.385 6.385 7 C 0.019 3.981 8 C 0.482 3.518 9 O -0.566 6.566 10 N -0.629 5.629 11 C 0.008 3.992 12 C -0.112 4.112 13 C -0.231 4.231 14 C -0.120 4.120 15 C -0.172 4.172 16 C 0.074 3.926 17 C -0.485 4.485 18 H 0.086 0.914 19 C 0.037 3.963 20 N -0.826 5.826 21 Si 0.982 3.018 22 H -0.252 1.252 23 H -0.267 1.267 24 H -0.272 1.272 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.413 0.587 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 -14.089 -1.958 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.164 4.164 4 C 0.026 3.974 5 H 0.135 0.865 6 O -0.303 6.303 7 C -0.076 4.076 8 C 0.270 3.730 9 O -0.445 6.445 10 N -0.274 5.274 11 C -0.087 4.087 12 C -0.132 4.132 13 C -0.250 4.250 14 C -0.138 4.138 15 C -0.192 4.192 16 C 0.070 3.930 17 C -0.515 4.515 18 H 0.104 0.896 19 C -0.178 4.178 20 N -0.452 5.452 21 Si 0.803 3.197 22 H -0.175 1.175 23 H -0.191 1.191 24 H -0.198 1.198 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.251 0.749 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.545 -13.575 -2.575 14.264 hybrid contribution -0.451 0.249 0.834 0.981 sum -3.997 -13.325 -1.741 14.020 Atomic orbital electron populations 1.21769 0.95012 1.02411 1.01807 1.21487 0.96571 0.94087 1.03025 1.21968 0.91127 1.00091 1.03183 1.22019 0.95292 0.89430 0.90622 0.86502 1.87993 1.74446 1.37863 1.29974 1.23179 0.96700 0.84365 1.03388 1.21716 0.80425 0.89776 0.81087 1.90590 1.39817 1.72120 1.41970 1.42857 1.55778 1.09787 1.18930 1.17943 0.97045 0.84226 1.09438 1.21007 0.95649 0.96534 1.00038 1.20634 1.03153 0.93935 1.07312 1.20722 0.96308 0.98756 0.98058 1.20987 0.99152 0.95841 1.03235 1.17756 0.92414 0.90841 0.91996 1.19598 1.08489 1.15328 1.08050 0.89618 1.26723 1.01946 0.92939 0.96203 1.69885 1.36938 1.21993 1.16421 0.85153 0.76864 0.79263 0.78458 1.17516 1.19142 1.19760 0.93327 0.91185 0.92628 0.91318 0.90197 0.89871 0.92418 0.93599 0.91267 0.88428 0.74926 0.86949 0.87026 0.87086 0.87144 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.91 71.98 0.71 -1.83 16 2 C -0.11 -2.03 5.45 30.59 0.17 -1.86 16 3 C -0.13 -3.10 4.89 30.59 0.15 -2.95 16 4 C 0.09 2.47 2.64 29.85 0.08 2.55 16 5 H 0.12 2.50 7.59 -2.39 -0.02 2.48 16 6 O -0.38 -11.36 9.50 -129.99 -1.24 -12.60 16 7 C 0.02 0.37 10.61 113.37 1.20 1.58 16 8 C 0.48 19.07 7.05 87.66 0.62 19.68 16 9 O -0.57 -27.40 13.60 15.95 0.22 -27.18 16 10 N -0.63 -25.89 4.90 -302.28 -1.48 -27.37 16 11 C 0.01 0.41 6.43 38.88 0.25 0.66 16 12 C -0.11 -5.67 8.74 22.36 0.20 -5.47 16 13 C -0.23 -11.10 10.04 22.42 0.23 -10.88 16 14 C -0.12 -5.82 9.97 22.01 0.22 -5.60 16 15 C -0.17 -9.10 8.61 22.47 0.19 -8.90 16 16 C 0.07 3.88 5.57 -21.18 -0.12 3.76 16 17 C -0.49 -23.94 8.37 23.38 0.20 -23.75 16 18 H 0.09 3.91 7.26 -2.91 -0.02 3.89 16 19 C 0.04 1.73 5.22 85.25 0.45 2.17 16 20 N -0.83 -41.15 10.85 21.83 0.24 -40.91 16 21 Si 0.98 35.37 29.58 68.60 2.03 37.40 16 22 H -0.25 -8.63 7.11 99.48 0.71 -7.93 16 23 H -0.27 -9.21 7.11 99.48 0.71 -8.51 16 24 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 25 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.21 7.41 -2.39 -0.02 1.19 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 2.03 7.86 -2.39 -0.02 2.01 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 0.84 8.10 -2.39 -0.02 0.83 16 33 H 0.07 0.95 7.38 -2.39 -0.02 0.94 16 34 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.41 14.78 7.55 -92.71 -0.70 14.08 16 36 H 0.11 5.75 5.78 -2.91 -0.02 5.73 16 37 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 39 H 0.11 6.00 6.17 -2.91 -0.02 5.98 16 40 H 0.29 12.96 8.30 -92.70 -0.77 12.19 16 Total: -1.00 -65.87 331.62 4.64 -61.22 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: 0.34 Total: 40.29 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: 4.54 Total: -30.84 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: -1.24 Total: -68.29 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -1.02 Total: -39.78 kcal Atomic # 14 Polarization: 35.37 SS G_CDS: 2.03 Total: 37.40 kcal Total: -65.87 4.64 -61.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410828421.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.617 kcal (2) G-P(sol) polarization free energy of solvation -65.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds