Wall clock time and date at job start Mon Mar 30 2020 01:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47208 * 2 1 4 4 C 1.53003 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47046 * 54.99624 * 4 3 2 6 6 O 1.42898 * 109.46752 * 294.99686 * 4 3 2 7 7 C 1.42898 * 113.99835 * 150.00359 * 6 4 3 8 8 C 1.50693 * 109.46779 * 175.00202 * 4 3 2 9 9 O 1.21281 * 120.00369 * 114.99974 * 8 4 3 10 10 N 1.34786 * 120.00039 * 294.99287 * 8 4 3 11 11 C 1.39121 * 119.99920 * 184.36804 * 10 8 4 12 12 C 1.38646 * 120.28683 * 325.34619 * 11 10 8 13 13 C 1.38223 * 120.03279 * 180.25797 * 12 11 10 14 14 C 1.38864 * 120.61570 * 359.74360 * 13 12 11 15 15 C 1.36462 * 120.58020 * 359.97438 * 14 13 12 16 16 C 1.40734 * 119.94128 * 0.02562 * 15 14 13 17 17 C 1.41072 * 120.30236 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99895 * 154.82813 * 17 16 15 19 19 C 1.39953 * 120.00132 * 334.83388 * 17 16 15 20 20 N 1.30853 * 119.99822 * 334.81504 * 19 17 16 21 21 Si 1.86797 * 120.00358 * 154.81623 * 19 17 16 22 22 H 1.48495 * 109.47227 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47153 * 300.00209 * 21 19 17 24 24 H 1.48502 * 109.46945 * 59.99790 * 21 19 17 25 25 H 1.09002 * 109.47215 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.47039 * 299.99670 * 1 2 3 27 27 H 1.08999 * 109.47947 * 59.99991 * 1 2 3 28 28 H 1.09000 * 109.46646 * 239.99765 * 2 1 3 29 29 H 1.08998 * 109.47207 * 120.00081 * 2 1 3 30 30 H 1.08998 * 109.47001 * 60.00194 * 3 2 1 31 31 H 1.08998 * 109.47102 * 300.00145 * 3 2 1 32 32 H 1.08999 * 109.47168 * 59.99866 * 7 6 4 33 33 H 1.08999 * 109.47177 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.47128 * 299.99556 * 7 6 4 35 35 H 0.96996 * 119.99391 * 4.36899 * 10 8 4 36 36 H 1.07997 * 119.98351 * 359.97378 * 12 11 10 37 37 H 1.08003 * 119.69008 * 179.75645 * 13 12 11 38 38 H 1.08007 * 119.70922 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.03434 * 180.02562 * 15 14 13 40 40 H 0.96999 * 119.99965 * 354.63987 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8426 6 8 4.0468 0.8729 1.2202 7 6 5.3063 0.2091 1.0989 8 6 4.0722 2.8578 -0.1244 9 8 4.6932 3.3629 0.7867 10 7 3.8314 3.5626 -1.2478 11 6 4.3717 4.8355 -1.3997 12 6 4.5127 5.6708 -0.3021 13 6 5.0453 6.9365 -0.4598 14 6 5.4485 7.3832 -1.7113 15 6 5.3265 6.5799 -2.8077 16 6 4.7874 5.2867 -2.6745 17 6 4.6573 4.4501 -3.8028 18 1 4.6420 3.3770 -3.6806 19 6 4.5480 5.0104 -5.0806 20 7 4.0801 6.2239 -5.2250 21 14 5.0701 4.0262 -6.5800 22 1 4.8558 4.8384 -7.8045 23 1 6.5081 3.6737 -6.4646 24 1 4.2610 2.7837 -6.6627 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3635 0.5138 -0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 6.0602 0.9193 0.7593 33 1 5.5984 -0.1959 2.0678 34 1 5.2210 -0.6031 0.3769 35 1 3.2813 3.1821 -1.9503 36 1 4.2020 5.3340 0.6759 37 1 5.1490 7.5840 0.3983 38 1 5.8632 8.3748 -1.8178 39 1 5.6433 6.9361 -3.7768 40 1 3.7367 6.7059 -4.4565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410828422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:25 Heat of formation + Delta-G solvation = -82.705184 kcal Electronic energy + Delta-G solvation = -21700.873783 eV Core-core repulsion = 18479.669075 eV Total energy + Delta-G solvation = -3221.204708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96640 -38.10974 -36.80270 -34.88447 -33.95472 -33.71162 -30.29148 -29.34991 -28.27719 -26.31894 -25.24821 -24.37782 -21.63437 -21.24314 -20.88242 -19.43119 -18.07231 -17.12201 -16.92976 -15.95369 -15.38090 -14.80755 -14.78486 -14.52702 -14.35503 -14.06880 -13.55208 -13.36516 -13.09267 -12.75247 -12.43079 -12.29886 -12.07461 -11.94417 -11.51078 -11.43019 -11.18194 -11.10635 -10.94491 -10.71747 -10.65813 -10.47485 -10.44303 -10.07036 -9.70854 -9.28431 -9.00607 -8.66375 -7.63778 -7.41168 -6.98155 -4.50518 2.53113 2.77726 3.08925 3.20017 3.29099 3.29964 3.55839 3.93726 4.01535 4.51929 4.75865 4.86171 4.99831 5.11207 5.26565 5.36581 5.44051 5.45957 5.56331 5.59611 5.74084 5.76606 5.81505 6.01713 6.13098 6.19291 6.25158 6.32135 6.47196 6.80292 6.93736 7.07892 7.13122 7.36458 7.51734 7.70238 7.75198 7.90468 8.00313 8.20473 8.33432 8.65415 8.75544 8.95307 9.97323 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014249 B = 0.005721 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.621186 B = 4892.982098 C = 5916.287541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.113 4.113 4 C 0.077 3.923 5 H 0.084 0.916 6 O -0.358 6.358 7 C 0.030 3.970 8 C 0.474 3.526 9 O -0.527 6.527 10 N -0.634 5.634 11 C 0.005 3.995 12 C -0.073 4.073 13 C -0.240 4.240 14 C -0.092 4.092 15 C -0.208 4.208 16 C 0.091 3.909 17 C -0.526 4.526 18 H 0.073 0.927 19 C 0.041 3.959 20 N -0.794 5.794 21 Si 1.063 2.937 22 H -0.273 1.273 23 H -0.275 1.275 24 H -0.276 1.276 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.401 0.599 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.926 -11.054 3.845 12.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.151 4.151 4 C 0.015 3.985 5 H 0.102 0.898 6 O -0.275 6.275 7 C -0.066 4.066 8 C 0.259 3.741 9 O -0.403 6.403 10 N -0.279 5.279 11 C -0.088 4.088 12 C -0.093 4.093 13 C -0.260 4.260 14 C -0.111 4.111 15 C -0.228 4.228 16 C 0.087 3.913 17 C -0.554 4.554 18 H 0.091 0.909 19 C -0.181 4.181 20 N -0.417 5.417 21 Si 0.887 3.113 22 H -0.198 1.198 23 H -0.200 1.200 24 H -0.202 1.202 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.236 0.764 36 H 0.128 0.872 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.442 -10.596 3.026 11.544 hybrid contribution -0.085 -0.188 1.103 1.122 sum -3.527 -10.784 4.129 12.074 Atomic orbital electron populations 1.21771 0.95686 1.01518 1.01996 1.21481 0.95870 0.95990 1.02463 1.21704 0.91215 0.98442 1.03762 1.22079 0.95875 0.91655 0.88911 0.89846 1.87938 1.36538 1.72303 1.30717 1.22823 0.85853 0.95681 1.02281 1.21285 0.81085 0.88431 0.83253 1.90649 1.40466 1.70576 1.38636 1.42891 1.49844 1.15946 1.19180 1.17615 1.10017 0.85897 0.95279 1.20711 0.98710 0.92707 0.97152 1.20270 1.12524 0.96978 0.96235 1.20401 0.99516 0.97870 0.93280 1.20748 1.07870 0.96188 0.98008 1.17489 0.89806 0.92798 0.91230 1.20307 1.47205 0.95570 0.92349 0.90867 1.26957 0.92411 0.96325 1.02456 1.70465 1.22804 1.10861 1.37587 0.83657 0.77644 0.75498 0.74523 1.19805 1.20050 1.20170 0.92794 0.92674 0.92602 0.92037 0.91171 0.90398 0.89978 0.93553 0.89529 0.94182 0.76356 0.87169 0.89009 0.89175 0.87357 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.23 5.83 -26.73 -0.16 -1.38 16 3 C -0.11 -1.41 4.89 -26.73 -0.13 -1.54 16 4 C 0.08 1.14 2.52 -27.88 -0.07 1.07 16 5 H 0.08 1.08 7.79 -51.93 -0.40 0.67 16 6 O -0.36 -5.55 9.42 -55.09 -0.52 -6.07 16 7 C 0.03 0.39 10.81 101.05 1.09 1.48 16 8 C 0.47 9.29 6.97 -10.98 -0.08 9.21 16 9 O -0.53 -12.32 13.92 -14.30 -0.20 -12.52 16 10 N -0.63 -12.97 4.82 -9.48 -0.05 -13.02 16 11 C 0.01 0.13 6.34 -83.17 -0.53 -0.39 16 12 C -0.07 -1.77 8.69 -39.44 -0.34 -2.12 16 13 C -0.24 -5.63 10.04 -39.36 -0.39 -6.03 16 14 C -0.09 -2.16 9.96 -39.99 -0.40 -2.56 16 15 C -0.21 -5.26 7.88 -39.28 -0.31 -5.57 16 16 C 0.09 2.32 5.32 -106.65 -0.57 1.76 16 17 C -0.53 -13.00 8.35 -37.87 -0.32 -13.32 16 18 H 0.07 1.72 7.39 -52.48 -0.39 1.33 16 19 C 0.04 0.98 4.95 -17.33 -0.09 0.90 16 20 N -0.79 -20.14 12.32 55.55 0.68 -19.46 16 21 Si 1.06 20.48 30.00 -169.99 -5.10 15.38 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 23 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.28 -4.96 7.11 56.52 0.40 -4.56 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.74 7.82 -51.93 -0.41 0.34 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 0.96 7.65 -51.93 -0.40 0.56 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 35 H 0.40 7.30 7.52 -40.82 -0.31 6.99 16 36 H 0.11 2.69 6.20 -52.49 -0.33 2.37 16 37 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 38 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 39 H 0.11 2.79 6.45 -52.49 -0.34 2.45 16 40 H 0.30 7.86 6.62 -40.82 -0.27 7.59 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -29.57 332.89 -7.93 -37.50 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -5.86 Total: 12.68 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -1.91 Total: -19.51 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.64 Total: -32.48 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.72 Total: -18.59 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.10 Total: 15.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.57 -7.93 -37.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410828422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.202 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds