Wall clock time and date at job start Mon Mar 30 2020 01:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47208 * 2 1 4 4 C 1.53003 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47046 * 54.99624 * 4 3 2 6 6 O 1.42898 * 109.46752 * 294.99686 * 4 3 2 7 7 C 1.42898 * 113.99835 * 150.00359 * 6 4 3 8 8 C 1.50693 * 109.46779 * 175.00202 * 4 3 2 9 9 O 1.21281 * 120.00369 * 114.99974 * 8 4 3 10 10 N 1.34786 * 120.00039 * 294.99287 * 8 4 3 11 11 C 1.39121 * 119.99920 * 184.36804 * 10 8 4 12 12 C 1.38646 * 120.28683 * 325.34619 * 11 10 8 13 13 C 1.38223 * 120.03279 * 180.25797 * 12 11 10 14 14 C 1.38864 * 120.61570 * 359.74360 * 13 12 11 15 15 C 1.36462 * 120.58020 * 359.97438 * 14 13 12 16 16 C 1.40734 * 119.94128 * 0.02562 * 15 14 13 17 17 C 1.41072 * 120.30236 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99895 * 154.82813 * 17 16 15 19 19 C 1.39953 * 120.00132 * 334.83388 * 17 16 15 20 20 N 1.30853 * 119.99822 * 334.81504 * 19 17 16 21 21 Si 1.86797 * 120.00358 * 154.81623 * 19 17 16 22 22 H 1.48495 * 109.47227 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47153 * 300.00209 * 21 19 17 24 24 H 1.48502 * 109.46945 * 59.99790 * 21 19 17 25 25 H 1.09002 * 109.47215 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.47039 * 299.99670 * 1 2 3 27 27 H 1.08999 * 109.47947 * 59.99991 * 1 2 3 28 28 H 1.09000 * 109.46646 * 239.99765 * 2 1 3 29 29 H 1.08998 * 109.47207 * 120.00081 * 2 1 3 30 30 H 1.08998 * 109.47001 * 60.00194 * 3 2 1 31 31 H 1.08998 * 109.47102 * 300.00145 * 3 2 1 32 32 H 1.08999 * 109.47168 * 59.99866 * 7 6 4 33 33 H 1.08999 * 109.47177 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.47128 * 299.99556 * 7 6 4 35 35 H 0.96996 * 119.99391 * 4.36899 * 10 8 4 36 36 H 1.07997 * 119.98351 * 359.97378 * 12 11 10 37 37 H 1.08003 * 119.69008 * 179.75645 * 13 12 11 38 38 H 1.08007 * 119.70922 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.03434 * 180.02562 * 15 14 13 40 40 H 0.96999 * 119.99965 * 354.63987 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8426 6 8 4.0468 0.8729 1.2202 7 6 5.3063 0.2091 1.0989 8 6 4.0722 2.8578 -0.1244 9 8 4.6932 3.3629 0.7867 10 7 3.8314 3.5626 -1.2478 11 6 4.3717 4.8355 -1.3997 12 6 4.5127 5.6708 -0.3021 13 6 5.0453 6.9365 -0.4598 14 6 5.4485 7.3832 -1.7113 15 6 5.3265 6.5799 -2.8077 16 6 4.7874 5.2867 -2.6745 17 6 4.6573 4.4501 -3.8028 18 1 4.6420 3.3770 -3.6806 19 6 4.5480 5.0104 -5.0806 20 7 4.0801 6.2239 -5.2250 21 14 5.0701 4.0262 -6.5800 22 1 4.8558 4.8384 -7.8045 23 1 6.5081 3.6737 -6.4646 24 1 4.2610 2.7837 -6.6627 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3635 0.5138 -0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 6.0602 0.9193 0.7593 33 1 5.5984 -0.1959 2.0678 34 1 5.2210 -0.6031 0.3769 35 1 3.2813 3.1821 -1.9503 36 1 4.2020 5.3340 0.6759 37 1 5.1490 7.5840 0.3983 38 1 5.8632 8.3748 -1.8178 39 1 5.6433 6.9361 -3.7768 40 1 3.7367 6.7059 -4.4565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410828422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:25 Heat of formation + Delta-G solvation = -98.726110 kcal Electronic energy + Delta-G solvation = -21701.568502 eV Core-core repulsion = 18479.669075 eV Total energy + Delta-G solvation = -3221.899427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53096 -39.68508 -38.32708 -35.97624 -35.78995 -35.29159 -31.56022 -31.22286 -29.86582 -27.36209 -27.01540 -25.64392 -23.35947 -22.68663 -22.13739 -21.06681 -19.88714 -18.67645 -18.26285 -17.42232 -16.78248 -16.46462 -16.11442 -15.90510 -15.66653 -15.59389 -15.03192 -14.69273 -14.36935 -14.20243 -14.13710 -13.87428 -13.39821 -13.22588 -13.00952 -12.70357 -12.48162 -12.39564 -12.21252 -12.00691 -11.97678 -11.95361 -11.52301 -11.49881 -11.44342 -11.05090 -10.79824 -10.21615 -9.56911 -9.30846 -8.84007 -6.42582 0.72547 0.89838 1.54007 1.64748 1.67549 1.81695 2.18222 2.34050 2.69245 2.78131 3.52193 3.61189 3.82887 3.90140 4.19240 4.26350 4.38093 4.38472 4.43993 4.48682 4.66027 4.67515 4.71904 4.78518 4.88766 4.93429 5.01902 5.05908 5.23983 5.27645 5.33640 5.47229 5.48011 5.64477 5.76960 5.88149 5.95672 6.04103 6.12406 6.32857 6.60931 6.83616 6.90328 7.30847 8.04991 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014249 B = 0.005721 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.621186 B = 4892.982098 C = 5916.287541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.110 4.110 4 C 0.086 3.914 5 H 0.111 0.889 6 O -0.374 6.374 7 C 0.024 3.976 8 C 0.470 3.530 9 O -0.569 6.569 10 N -0.631 5.631 11 C 0.000 4.000 12 C -0.090 4.090 13 C -0.243 4.243 14 C -0.095 4.095 15 C -0.227 4.227 16 C 0.065 3.935 17 C -0.541 4.541 18 H 0.082 0.918 19 C 0.008 3.992 20 N -0.813 5.813 21 Si 1.113 2.887 22 H -0.276 1.276 23 H -0.270 1.270 24 H -0.250 1.250 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.022 0.978 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.412 0.588 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 -13.159 3.215 14.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.148 4.148 4 C 0.025 3.975 5 H 0.128 0.872 6 O -0.291 6.291 7 C -0.072 4.072 8 C 0.259 3.741 9 O -0.448 6.448 10 N -0.276 5.276 11 C -0.095 4.095 12 C -0.110 4.110 13 C -0.262 4.262 14 C -0.114 4.114 15 C -0.247 4.247 16 C 0.061 3.939 17 C -0.569 4.569 18 H 0.100 0.900 19 C -0.209 4.209 20 N -0.436 5.436 21 Si 0.931 3.069 22 H -0.201 1.201 23 H -0.195 1.195 24 H -0.174 1.174 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.040 0.960 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.249 0.751 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.114 0.886 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.835 -12.723 2.413 13.505 hybrid contribution 0.053 0.494 1.413 1.498 sum -3.782 -12.228 3.826 13.360 Atomic orbital electron populations 1.21768 0.94803 1.02430 1.01917 1.21442 0.96563 0.94083 1.03043 1.21736 0.89347 1.00266 1.03441 1.22161 0.97191 0.88385 0.89813 0.87181 1.87933 1.37559 1.72341 1.31285 1.23018 0.84166 0.95672 1.04296 1.22296 0.79824 0.90081 0.81925 1.90619 1.42299 1.71945 1.39925 1.42906 1.49820 1.14918 1.19968 1.17803 1.09432 0.87387 0.94864 1.20856 0.99619 0.93447 0.97069 1.20583 1.11609 0.96977 0.97060 1.20656 0.99133 0.98843 0.92769 1.20793 1.08942 0.96889 0.98073 1.17812 0.90531 0.93366 0.92173 1.20523 1.47735 0.95960 0.92711 0.89975 1.28338 0.91158 0.96337 1.05105 1.70575 1.24423 1.11805 1.36796 0.83039 0.77842 0.75076 0.70969 1.20061 1.19502 1.17356 0.91391 0.93110 0.92398 0.90559 0.91446 0.91828 0.89280 0.95950 0.87686 0.91201 0.75123 0.87656 0.86691 0.86589 0.88553 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.67 16 2 C -0.11 -2.02 5.83 30.59 0.18 -1.84 16 3 C -0.11 -2.56 4.89 30.60 0.15 -2.41 16 4 C 0.09 2.42 2.52 29.85 0.08 2.50 16 5 H 0.11 2.53 7.79 -2.39 -0.02 2.52 16 6 O -0.37 -11.06 9.42 -129.99 -1.22 -12.29 16 7 C 0.02 0.58 10.81 113.37 1.23 1.81 16 8 C 0.47 18.36 6.97 87.65 0.61 18.97 16 9 O -0.57 -27.00 13.92 15.96 0.22 -26.78 16 10 N -0.63 -25.74 4.82 -302.28 -1.46 -27.20 16 11 C 0.00 -0.02 6.34 38.88 0.25 0.23 16 12 C -0.09 -4.43 8.69 22.36 0.19 -4.23 16 13 C -0.24 -11.35 10.04 22.42 0.22 -11.12 16 14 C -0.10 -4.48 9.96 22.00 0.22 -4.26 16 15 C -0.23 -11.68 7.88 22.46 0.18 -11.50 16 16 C 0.07 3.38 5.32 -21.18 -0.11 3.27 16 17 C -0.54 -26.70 8.35 23.38 0.20 -26.51 16 18 H 0.08 3.79 7.39 -2.91 -0.02 3.77 16 19 C 0.01 0.38 4.95 85.25 0.42 0.80 16 20 N -0.81 -41.68 12.32 21.83 0.27 -41.41 16 21 Si 1.11 39.97 30.00 68.60 2.06 42.03 16 22 H -0.28 -9.96 7.11 99.48 0.71 -9.25 16 23 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 24 H -0.25 -7.88 7.11 99.48 0.71 -7.18 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.25 7.82 -2.39 -0.02 1.24 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.09 1.93 7.65 -2.39 -0.02 1.91 16 32 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 1.23 8.09 -2.38 -0.02 1.21 16 35 H 0.41 14.70 7.52 -92.71 -0.70 14.00 16 36 H 0.11 5.26 6.20 -2.91 -0.02 5.24 16 37 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 38 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 39 H 0.10 5.10 6.45 -2.91 -0.02 5.09 16 40 H 0.29 15.34 6.62 -92.71 -0.61 14.73 16 Total: -1.00 -64.57 332.89 4.88 -59.69 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: 0.49 Total: 41.93 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 4.52 Total: -35.98 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -1.19 Total: -68.60 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.00 Total: -39.07 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.06 Total: 42.03 kcal Total: -64.57 4.88 -59.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410828422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.038 kcal (2) G-P(sol) polarization free energy of solvation -64.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds