Wall clock time and date at job start Mon Mar 30 2020 02:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46608 * 2 1 4 4 C 1.52993 * 109.47235 * 240.00170 * 2 1 3 5 5 O 1.42901 * 109.47117 * 119.99600 * 2 1 3 6 6 C 1.35714 * 116.99895 * 62.62565 * 5 2 1 7 7 C 1.38990 * 119.91029 * 355.90084 * 6 5 2 8 8 C 1.37701 * 120.08785 * 180.25548 * 7 6 5 9 9 C 1.39740 * 119.90904 * 359.44486 * 8 7 6 10 10 C 1.47605 * 120.08713 * 180.29734 * 9 8 7 11 11 O 1.21587 * 119.99946 * 0.02562 * 10 9 8 12 12 N 1.34770 * 119.99907 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00200 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47515 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99729 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00281 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00169 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00097 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46804 * 60.00340 * 18 16 14 20 20 H 1.48500 * 109.47352 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47418 * 300.00423 * 18 16 14 22 22 C 1.39727 * 119.82223 * 0.28167 * 9 8 7 23 23 C 1.37703 * 119.91567 * 359.97438 * 22 9 8 24 24 H 1.09007 * 109.47069 * 319.38044 * 1 2 3 25 25 H 1.08994 * 109.47216 * 79.38252 * 1 2 3 26 26 H 1.09000 * 109.46931 * 199.38644 * 1 2 3 27 27 H 1.09004 * 109.46910 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.46907 * 299.99881 * 3 2 1 29 29 H 1.08998 * 109.47518 * 60.00177 * 3 2 1 30 30 H 1.08998 * 109.46790 * 289.61181 * 4 2 1 31 31 H 1.09004 * 109.47132 * 49.60873 * 4 2 1 32 32 H 1.09003 * 109.47213 * 169.61441 * 4 2 1 33 33 H 1.08006 * 119.95986 * 0.02562 * 7 6 5 34 34 H 1.08003 * 120.04916 * 179.72142 * 8 7 6 35 35 H 0.96999 * 119.99810 * 359.97438 * 12 10 9 36 36 H 1.09007 * 109.46970 * 300.00130 * 13 12 10 37 37 H 1.08997 * 109.47125 * 59.99405 * 13 12 10 38 38 H 0.96993 * 120.00562 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.04321 * 180.02562 * 22 9 8 40 40 H 1.07998 * 119.95873 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.6875 -1.9866 1.2936 7 6 0.8592 -2.5923 0.3561 8 6 0.5291 -3.9230 0.4840 9 6 1.0374 -4.6675 1.5518 10 6 0.6914 -6.0958 1.6890 11 8 -0.0365 -6.6262 0.8722 12 7 1.1823 -6.8120 2.7198 13 6 0.8393 -8.2298 2.8558 14 6 1.5118 -8.7941 4.0806 15 1 2.1330 -8.1601 4.6960 16 6 1.3341 -10.1197 4.4157 17 7 0.5782 -10.8918 3.6660 18 14 2.1683 -10.8193 5.9336 19 1 1.7075 -10.0804 7.1365 20 1 1.8196 -12.2561 6.0722 21 1 3.6404 -10.6774 5.7993 22 6 1.8744 -4.0562 2.4889 23 6 2.1956 -2.7237 2.3568 24 1 -0.3633 0.7801 0.6691 25 1 -0.3633 0.1893 -1.0100 26 1 -0.3633 -0.9694 0.3411 27 1 3.1299 1.4427 0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.8359 -1.7883 -1.1614 31 1 1.5333 -0.3256 -2.1295 32 1 3.1142 -0.5635 -1.3467 33 1 0.4709 -2.0176 -0.4718 34 1 -0.1183 -4.3919 -0.2423 35 1 1.7633 -6.3889 3.3712 36 1 -0.2413 -8.3345 2.9533 37 1 1.1786 -8.7719 1.9731 38 1 0.4535 -11.8244 3.9015 39 1 2.2697 -4.6283 3.3152 40 1 2.8428 -2.2507 3.0805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427612542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:10 Heat of formation + Delta-G solvation = -42.632388 kcal Electronic energy + Delta-G solvation = -20912.672995 eV Core-core repulsion = 17693.205974 eV Total energy + Delta-G solvation = -3219.467021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02414 -39.12257 -37.16132 -34.41872 -34.22182 -32.43324 -31.11819 -30.21201 -27.85805 -27.77649 -26.95927 -23.88309 -22.91228 -21.94205 -20.76787 -19.74828 -18.03831 -17.37027 -16.34875 -15.81147 -15.58607 -15.23279 -15.05874 -14.54236 -14.44614 -14.04077 -13.95440 -13.76469 -13.29762 -13.05131 -12.79627 -12.48599 -12.34397 -12.25151 -12.11645 -12.01999 -11.84795 -11.63196 -10.99456 -10.93872 -10.89909 -10.78488 -10.61218 -10.31125 -9.40537 -9.13896 -8.99852 -8.72659 -8.21951 -7.81675 -6.15526 -4.22618 1.08002 1.34873 2.93960 3.26411 3.28620 3.31111 3.32624 4.09369 4.18064 4.33611 4.38550 4.40778 4.54892 4.73810 4.81873 5.12496 5.15508 5.16293 5.20505 5.28171 5.31107 5.36076 5.40133 5.43530 5.55071 5.63249 5.71244 5.84545 5.87466 5.99935 6.23606 6.31616 6.50324 6.66214 7.29769 7.33365 7.43311 7.52944 7.67523 7.97834 8.62628 8.78450 9.09304 9.43824 10.94708 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042126 B = 0.003079 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.511027 B = 9090.682677 C = 9558.166545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.108 3.892 3 C -0.137 4.137 4 C -0.204 4.204 5 O -0.306 6.306 6 C 0.149 3.851 7 C -0.234 4.234 8 C -0.029 4.029 9 C -0.160 4.160 10 C 0.542 3.458 11 O -0.556 6.556 12 N -0.706 5.706 13 C 0.249 3.751 14 C -0.544 4.544 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.049 4.049 23 C -0.162 4.162 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.152 0.848 34 H 0.137 0.863 35 H 0.390 0.610 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.267 0.733 39 H 0.135 0.865 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.056 23.913 -6.747 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.070 3.930 3 C -0.194 4.194 4 C -0.261 4.261 5 O -0.220 6.220 6 C 0.103 3.897 7 C -0.252 4.252 8 C -0.048 4.048 9 C -0.163 4.163 10 C 0.328 3.672 11 O -0.437 6.437 12 N -0.354 5.354 13 C 0.129 3.871 14 C -0.583 4.583 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.067 4.067 23 C -0.181 4.181 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.170 0.830 34 H 0.155 0.845 35 H 0.223 0.777 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.153 0.847 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.576 23.417 -7.202 24.635 hybrid contribution 0.591 -0.303 0.971 1.176 sum 3.167 23.115 -6.231 24.148 Atomic orbital electron populations 1.22905 0.94751 1.04764 1.03356 1.21805 0.94002 0.93020 0.84156 1.21805 1.02177 0.92464 1.02950 1.22957 1.02612 1.03416 0.97126 1.86098 1.72616 1.20115 1.43168 1.19107 0.93238 0.83067 0.94322 1.21802 1.04335 0.96655 1.02381 1.21119 0.95496 0.92363 0.95784 1.20191 1.02735 0.95115 0.98267 1.18166 0.81121 0.85627 0.82313 1.90724 1.38147 1.72057 1.42771 1.46412 1.49085 1.13818 1.26105 1.19134 0.96711 0.74100 0.97170 1.21184 1.31255 0.95757 1.10067 0.91934 1.24948 0.95118 0.96703 0.97205 1.69961 1.37363 1.06811 1.38154 0.86469 0.79776 0.78022 0.82611 1.20045 1.21065 1.20040 1.21204 0.94479 0.93687 0.97376 1.20324 1.04830 0.93713 0.99202 0.91481 0.90890 0.89584 0.91505 0.90441 0.91488 0.89337 0.90890 0.91481 0.83047 0.84494 0.77667 0.95358 0.95368 0.92371 0.84705 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.54 8.10 37.16 0.30 -1.23 16 2 C 0.11 0.90 1.11 -90.62 -0.10 0.80 16 3 C -0.14 -0.88 8.74 37.16 0.32 -0.55 16 4 C -0.20 -1.59 8.07 37.15 0.30 -1.29 16 5 O -0.31 -3.45 9.78 -18.85 -0.18 -3.63 16 6 C 0.15 1.83 6.07 -39.02 -0.24 1.59 16 7 C -0.23 -2.82 5.70 -39.50 -0.23 -3.04 16 8 C -0.03 -0.42 9.58 -39.22 -0.38 -0.80 16 9 C -0.16 -2.66 5.87 -104.96 -0.62 -3.27 16 10 C 0.54 11.53 7.76 -12.44 -0.10 11.43 16 11 O -0.56 -13.88 16.34 5.29 0.09 -13.79 16 12 N -0.71 -15.43 5.50 -62.51 -0.34 -15.77 16 13 C 0.25 6.72 5.43 -5.20 -0.03 6.69 16 14 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 15 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 18 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.05 -0.68 9.53 -39.22 -0.37 -1.05 16 23 C -0.16 -2.02 9.97 -39.50 -0.39 -2.42 16 24 H 0.07 0.48 7.98 -51.92 -0.41 0.07 16 25 H 0.07 0.43 7.83 -51.93 -0.41 0.02 16 26 H 0.09 0.78 4.77 -51.93 -0.25 0.53 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.43 8.13 -51.93 -0.42 0.00 16 30 H 0.09 0.80 4.47 -51.93 -0.23 0.57 16 31 H 0.07 0.43 7.91 -51.93 -0.41 0.02 16 32 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 33 H 0.15 1.47 3.58 -52.48 -0.19 1.29 16 34 H 0.14 2.02 7.64 -52.48 -0.40 1.62 16 35 H 0.39 7.27 6.34 -40.82 -0.26 7.01 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.14 1.67 6.39 -52.49 -0.34 1.33 16 40 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 326.12 15.07 4.91 4.91 Total: -1.00 -32.63 326.12 -7.14 -39.77 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.39 Total: 4.76 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.94 Total: -6.66 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.39 Total: -41.27 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.10 Total: -17.43 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.63 -7.14 -39.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427612542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.863 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds