Wall clock time and date at job start Mon Mar 30 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46608 * 2 1 4 4 C 1.52993 * 109.47235 * 240.00170 * 2 1 3 5 5 O 1.42901 * 109.47117 * 119.99600 * 2 1 3 6 6 C 1.35714 * 116.99895 * 62.62565 * 5 2 1 7 7 C 1.38990 * 119.91029 * 355.90084 * 6 5 2 8 8 C 1.37701 * 120.08785 * 180.25548 * 7 6 5 9 9 C 1.39740 * 119.90904 * 359.44486 * 8 7 6 10 10 C 1.47605 * 120.08713 * 180.29734 * 9 8 7 11 11 O 1.21587 * 119.99946 * 0.02562 * 10 9 8 12 12 N 1.34770 * 119.99907 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00200 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47515 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99729 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00281 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00169 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00097 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46804 * 60.00340 * 18 16 14 20 20 H 1.48500 * 109.47352 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47418 * 300.00423 * 18 16 14 22 22 C 1.39727 * 119.82223 * 0.28167 * 9 8 7 23 23 C 1.37703 * 119.91567 * 359.97438 * 22 9 8 24 24 H 1.09007 * 109.47069 * 319.38044 * 1 2 3 25 25 H 1.08994 * 109.47216 * 79.38252 * 1 2 3 26 26 H 1.09000 * 109.46931 * 199.38644 * 1 2 3 27 27 H 1.09004 * 109.46910 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.46907 * 299.99881 * 3 2 1 29 29 H 1.08998 * 109.47518 * 60.00177 * 3 2 1 30 30 H 1.08998 * 109.46790 * 289.61181 * 4 2 1 31 31 H 1.09004 * 109.47132 * 49.60873 * 4 2 1 32 32 H 1.09003 * 109.47213 * 169.61441 * 4 2 1 33 33 H 1.08006 * 119.95986 * 0.02562 * 7 6 5 34 34 H 1.08003 * 120.04916 * 179.72142 * 8 7 6 35 35 H 0.96999 * 119.99810 * 359.97438 * 12 10 9 36 36 H 1.09007 * 109.46970 * 300.00130 * 13 12 10 37 37 H 1.08997 * 109.47125 * 59.99405 * 13 12 10 38 38 H 0.96993 * 120.00562 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.04321 * 180.02562 * 22 9 8 40 40 H 1.07998 * 119.95873 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.6875 -1.9866 1.2936 7 6 0.8592 -2.5923 0.3561 8 6 0.5291 -3.9230 0.4840 9 6 1.0374 -4.6675 1.5518 10 6 0.6914 -6.0958 1.6890 11 8 -0.0365 -6.6262 0.8722 12 7 1.1823 -6.8120 2.7198 13 6 0.8393 -8.2298 2.8558 14 6 1.5118 -8.7941 4.0806 15 1 2.1330 -8.1601 4.6960 16 6 1.3341 -10.1197 4.4157 17 7 0.5782 -10.8918 3.6660 18 14 2.1683 -10.8193 5.9336 19 1 1.7075 -10.0804 7.1365 20 1 1.8196 -12.2561 6.0722 21 1 3.6404 -10.6774 5.7993 22 6 1.8744 -4.0562 2.4889 23 6 2.1956 -2.7237 2.3568 24 1 -0.3633 0.7801 0.6691 25 1 -0.3633 0.1893 -1.0100 26 1 -0.3633 -0.9694 0.3411 27 1 3.1299 1.4427 0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.8359 -1.7883 -1.1614 31 1 1.5333 -0.3256 -2.1295 32 1 3.1142 -0.5635 -1.3467 33 1 0.4709 -2.0176 -0.4718 34 1 -0.1183 -4.3919 -0.2423 35 1 1.7633 -6.3889 3.3712 36 1 -0.2413 -8.3345 2.9533 37 1 1.1786 -8.7719 1.9731 38 1 0.4535 -11.8244 3.9015 39 1 2.2697 -4.6283 3.3152 40 1 2.8428 -2.2507 3.0805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427612542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:09 Heat of formation + Delta-G solvation = -64.159222 kcal Electronic energy + Delta-G solvation = -20913.606468 eV Core-core repulsion = 17693.205974 eV Total energy + Delta-G solvation = -3220.400494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.95547 -40.65015 -38.37306 -36.22303 -35.16071 -34.43678 -32.22921 -31.41147 -29.28469 -28.36645 -28.13295 -25.42986 -24.26192 -23.34978 -21.85483 -21.11173 -19.57806 -18.36268 -17.90347 -17.35919 -16.62134 -16.52221 -16.37870 -16.11257 -15.93749 -15.12498 -14.90476 -14.81019 -14.66957 -14.08985 -14.02570 -13.88310 -13.79990 -13.12362 -12.97610 -12.94718 -12.93313 -12.86801 -12.67989 -12.57042 -12.23909 -11.76863 -11.62035 -11.52731 -11.43208 -10.90199 -10.80242 -10.03908 -9.93242 -9.18549 -8.29338 -6.46521 -0.10888 0.30130 1.43378 1.47888 1.55982 1.88523 2.13582 2.30962 2.54942 2.84192 3.05545 3.65900 3.79266 3.81656 3.83056 3.91066 3.96502 4.19007 4.33459 4.48965 4.58363 4.64052 4.75584 4.81892 4.87667 4.92246 4.97477 5.05899 5.15010 5.16509 5.21670 5.21750 5.29381 5.36090 5.37983 5.45084 5.60817 5.69628 5.82827 6.40526 6.62923 6.85295 7.21513 7.41117 8.82888 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042126 B = 0.003079 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.511027 B = 9090.682677 C = 9558.166545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.097 3.903 3 C -0.135 4.135 4 C -0.204 4.204 5 O -0.311 6.311 6 C 0.159 3.841 7 C -0.221 4.221 8 C -0.036 4.036 9 C -0.187 4.187 10 C 0.540 3.460 11 O -0.604 6.604 12 N -0.701 5.701 13 C 0.266 3.734 14 C -0.558 4.558 15 H 0.085 0.915 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.986 3.014 19 H -0.261 1.261 20 H -0.285 1.285 21 H -0.261 1.261 22 C -0.042 4.042 23 C -0.162 4.162 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.177 0.823 34 H 0.128 0.872 35 H 0.407 0.593 36 H -0.011 1.011 37 H -0.011 1.011 38 H 0.269 0.731 39 H 0.149 0.851 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 26.711 -5.796 27.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.060 3.940 3 C -0.192 4.192 4 C -0.261 4.261 5 O -0.225 6.225 6 C 0.112 3.888 7 C -0.239 4.239 8 C -0.055 4.055 9 C -0.191 4.191 10 C 0.329 3.671 11 O -0.488 6.488 12 N -0.351 5.351 13 C 0.144 3.856 14 C -0.596 4.596 15 H 0.103 0.897 16 C -0.196 4.196 17 N -0.569 5.569 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.210 1.210 21 H -0.186 1.186 22 C -0.061 4.061 23 C -0.180 4.180 24 H 0.090 0.910 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.194 0.806 34 H 0.146 0.854 35 H 0.244 0.756 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.078 0.922 39 H 0.166 0.834 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.168 26.277 -6.241 27.328 hybrid contribution 0.087 -0.974 0.557 1.126 sum 4.255 25.303 -5.684 26.280 Atomic orbital electron populations 1.22911 0.94107 1.03992 1.04796 1.22175 0.94621 0.93867 0.83314 1.21848 1.02178 0.91087 1.04076 1.22960 1.02997 1.02372 0.97776 1.86119 1.72489 1.19244 1.44667 1.19262 0.92064 0.83719 0.93751 1.21991 1.03604 0.95394 1.02921 1.21132 0.95655 0.93440 0.95262 1.19829 1.06020 0.92279 1.00939 1.18915 0.79712 0.87482 0.80951 1.90682 1.40214 1.73562 1.44307 1.46120 1.49776 1.12000 1.27182 1.18593 0.94295 0.76754 0.96005 1.21577 1.31434 0.96490 1.10108 0.89720 1.26086 0.95560 0.97077 1.00840 1.70131 1.39020 1.07304 1.40477 0.85185 0.78960 0.76929 0.78014 1.18582 1.21035 1.18566 1.21293 0.93494 0.94450 0.96855 1.20573 1.04754 0.93009 0.99693 0.91015 0.88792 0.91168 0.91578 0.88247 0.91478 0.90854 0.88658 0.91439 0.80648 0.85408 0.75620 0.99262 0.99263 0.92175 0.83360 0.82413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.49 8.10 71.98 0.58 -1.90 16 2 C 0.10 1.34 1.11 -10.79 -0.01 1.32 16 3 C -0.13 -1.29 8.74 71.98 0.63 -0.66 16 4 C -0.20 -2.60 8.07 71.98 0.58 -2.02 16 5 O -0.31 -6.15 9.78 -90.35 -0.88 -7.04 16 6 C 0.16 3.56 6.07 22.63 0.14 3.70 16 7 C -0.22 -5.03 5.70 22.32 0.13 -4.90 16 8 C -0.04 -1.06 9.58 22.51 0.22 -0.84 16 9 C -0.19 -6.32 5.87 -20.08 -0.12 -6.44 16 10 C 0.54 24.10 7.76 86.72 0.67 24.78 16 11 O -0.60 -32.17 16.34 -3.99 -0.07 -32.24 16 12 N -0.70 -31.79 5.50 -469.95 -2.58 -34.37 16 13 C 0.27 15.14 5.43 85.63 0.46 15.60 16 14 C -0.56 -30.97 9.28 25.60 0.24 -30.73 16 15 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 16 C 0.00 0.23 5.46 84.65 0.46 0.69 16 17 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 18 Si 0.99 42.65 29.54 68.60 2.03 44.68 16 19 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 22 C -0.04 -1.12 9.53 22.50 0.21 -0.91 16 23 C -0.16 -3.66 9.97 22.32 0.22 -3.44 16 24 H 0.07 0.83 7.98 -2.38 -0.02 0.81 16 25 H 0.09 0.77 7.83 -2.39 -0.02 0.75 16 26 H 0.07 1.11 4.77 -2.39 -0.01 1.10 16 27 H 0.07 0.65 8.14 -2.38 -0.02 0.64 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.65 8.13 -2.39 -0.02 0.63 16 30 H 0.07 1.17 4.47 -2.39 -0.01 1.16 16 31 H 0.09 0.79 7.91 -2.38 -0.02 0.77 16 32 H 0.07 0.86 8.11 -2.39 -0.02 0.84 16 33 H 0.18 3.08 3.58 -2.91 -0.01 3.07 16 34 H 0.13 3.96 7.64 -2.91 -0.02 3.93 16 35 H 0.41 15.24 6.34 -92.71 -0.59 14.65 16 36 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.15 3.43 6.39 -2.91 -0.02 3.41 16 40 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -73.99 326.12 3.67 -70.33 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.47 Total: 21.00 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 4.42 Total: -5.75 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -2.30 Total: -90.97 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.95 Total: -39.28 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -73.99 3.67 -70.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427612542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.168 kcal (2) G-P(sol) polarization free energy of solvation -73.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds