Wall clock time and date at job start Mon Mar 30 2020 02:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46755 * 2 1 4 4 H 1.08998 * 109.47094 * 305.69841 * 3 2 1 5 5 C 1.50697 * 109.47151 * 65.70176 * 3 2 1 6 6 O 1.21284 * 120.00262 * 34.90425 * 5 3 2 7 7 N 1.34775 * 120.00014 * 214.90499 * 5 3 2 8 8 C 1.46501 * 120.00329 * 174.98255 * 7 5 3 9 9 C 1.50701 * 109.47510 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99561 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00212 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99839 * 359.97438 * 11 9 8 13 13 Si 1.86790 * 119.99904 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47495 * 90.00134 * 13 11 9 15 15 H 1.48501 * 109.46983 * 209.99869 * 13 11 9 16 16 H 1.48503 * 109.47281 * 329.99383 * 13 11 9 17 17 C 1.50702 * 109.46856 * 185.70034 * 3 2 1 18 18 C 1.38272 * 119.94155 * 299.72595 * 17 3 2 19 19 C 1.38149 * 120.05154 * 179.72271 * 18 17 3 20 20 C 1.38734 * 119.94395 * 0.55360 * 19 18 17 21 21 O 1.35895 * 120.05392 * 179.74518 * 20 19 18 22 22 C 1.42901 * 117.00174 * 359.97438 * 21 20 19 23 23 C 1.38730 * 119.88544 * 359.72155 * 20 19 18 24 24 C 1.38138 * 119.94847 * 359.97438 * 23 20 19 25 25 H 1.08996 * 109.46978 * 54.97930 * 1 2 3 26 26 H 1.08999 * 109.47056 * 174.98251 * 1 2 3 27 27 H 1.09000 * 109.47249 * 294.97980 * 1 2 3 28 28 H 1.09000 * 109.46907 * 239.99496 * 2 1 3 29 29 H 1.09005 * 109.46700 * 119.99906 * 2 1 3 30 30 H 0.97001 * 119.99765 * 354.97693 * 7 5 3 31 31 H 1.08998 * 109.46993 * 300.00077 * 8 7 5 32 32 H 1.09007 * 109.46900 * 59.99809 * 8 7 5 33 33 H 0.96995 * 119.99762 * 179.97438 * 12 11 9 34 34 H 1.07997 * 119.97736 * 0.02562 * 18 17 3 35 35 H 1.08000 * 120.02582 * 180.26835 * 19 18 17 36 36 H 1.08998 * 109.47355 * 179.97438 * 22 21 20 37 37 H 1.08999 * 109.47465 * 300.00044 * 22 21 20 38 38 H 1.09003 * 109.47346 * 60.00252 * 22 21 20 39 39 H 1.08007 * 120.02056 * 179.97438 * 23 20 19 40 40 H 1.08005 * 119.96971 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5957 1.9849 -0.8346 5 6 1.6561 2.1110 1.2949 6 8 1.6361 1.4711 2.3251 7 7 1.3352 3.4199 1.3083 8 6 0.8564 4.0441 2.5442 9 6 0.5702 5.5021 2.2925 10 1 0.7294 5.9218 1.3102 11 6 0.1061 6.3004 3.3164 12 7 -0.0872 5.7893 4.5126 13 14 -0.2493 8.1074 3.0041 14 1 -1.6614 8.2669 2.5731 15 1 -0.0227 8.8793 4.2523 16 1 0.6536 8.6126 1.9388 17 6 3.5403 1.4449 -0.1411 18 6 4.3240 0.8177 0.8099 19 6 5.6993 0.8136 0.6798 20 6 6.2946 1.4492 -0.4001 21 8 7.6476 1.4509 -0.5276 22 6 8.3958 0.7792 0.4878 23 6 5.5063 2.0826 -1.3499 24 6 4.1312 2.0785 -1.2186 25 1 -0.3633 0.5897 -0.8416 26 1 -0.3633 -1.0237 -0.0899 27 1 -0.3634 0.4340 0.9315 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.4212 3.9486 0.4997 31 1 -0.0555 3.5460 2.8733 32 1 1.6197 3.9522 3.3170 33 1 -0.4134 6.3510 5.2330 34 1 3.8603 0.3265 1.6526 35 1 6.3107 0.3199 1.4206 36 1 9.4601 0.8557 0.2655 37 1 8.1921 1.2403 1.4543 38 1 8.1059 -0.2711 0.5180 39 1 5.9675 2.5785 -2.1913 40 1 3.5172 2.5711 -1.9580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427644661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:21 Heat of formation + Delta-G solvation = -70.538420 kcal Electronic energy + Delta-G solvation = -21173.089343 eV Core-core repulsion = 17952.412226 eV Total energy + Delta-G solvation = -3220.677117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.34605 -39.19734 -37.36319 -34.50483 -33.93754 -32.28955 -31.06430 -30.52455 -28.04708 -27.31129 -25.82341 -23.06586 -22.80869 -21.77147 -21.05906 -19.30773 -18.19934 -17.21525 -16.34363 -15.84834 -15.82836 -15.42757 -15.13900 -14.58181 -14.27790 -14.07116 -13.82474 -13.55278 -13.23021 -12.97223 -12.77528 -12.40314 -12.25228 -11.98769 -11.92067 -11.71872 -11.26548 -11.09694 -10.96608 -10.91632 -10.82359 -10.72568 -10.56551 -10.28824 -9.38253 -9.05678 -8.95318 -8.71720 -8.03285 -7.83864 -6.15468 -4.22059 1.36539 1.42933 3.17942 3.24953 3.31150 3.33743 3.38832 3.76016 4.15075 4.39479 4.76822 4.83301 4.88903 4.98198 5.00317 5.14039 5.20818 5.24724 5.28788 5.42154 5.43714 5.50249 5.67859 5.73873 5.77375 5.94089 6.07540 6.12644 6.28044 6.35262 6.41897 6.48044 6.70286 6.74917 7.32115 7.34019 7.47410 7.53695 7.68793 7.98825 8.66206 8.79933 9.13093 9.44658 10.94812 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.004356 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.567858 B = 6426.289693 C = 7414.343964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.101 4.101 3 C -0.066 4.066 4 H 0.091 0.909 5 C 0.510 3.490 6 O -0.554 6.554 7 N -0.710 5.710 8 C 0.250 3.750 9 C -0.542 4.542 10 H 0.063 0.937 11 C 0.064 3.936 12 N -0.886 5.886 13 Si 0.903 3.097 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.272 1.272 17 C -0.106 4.106 18 C -0.061 4.061 19 C -0.206 4.206 20 C 0.121 3.879 21 O -0.320 6.320 22 C 0.028 3.972 23 C -0.153 4.153 24 C -0.073 4.073 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.390 0.610 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.129 0.871 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.929 -10.685 -12.171 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.139 4.139 3 C -0.088 4.088 4 H 0.109 0.891 5 C 0.294 3.706 6 O -0.433 6.433 7 N -0.358 5.358 8 C 0.129 3.871 9 C -0.581 4.581 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.524 5.524 13 Si 0.730 3.270 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.197 1.197 17 C -0.107 4.107 18 C -0.079 4.079 19 C -0.225 4.225 20 C 0.076 3.924 21 O -0.234 6.234 22 C -0.068 4.068 23 C -0.171 4.171 24 C -0.091 4.091 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.222 0.778 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.147 0.853 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.942 -10.980 -11.354 19.215 hybrid contribution -0.148 1.220 -0.129 1.235 sum 10.794 -9.761 -11.483 18.538 Atomic orbital electron populations 1.21805 0.95462 1.01479 1.02451 1.21392 0.96093 0.93797 1.02586 1.20361 0.92367 0.98368 0.97679 0.89075 1.20229 0.77631 0.82885 0.89836 1.90626 1.54035 1.64479 1.34190 1.46488 1.64797 1.08832 1.15662 1.19090 0.94821 0.92000 0.81164 1.21234 1.46009 0.93807 0.97005 0.91922 1.24944 0.95088 0.99140 0.94811 1.69975 1.44631 1.36363 1.01392 0.86427 0.78691 0.84074 0.77805 1.20455 1.21013 1.19728 1.19432 0.94055 1.01008 0.96200 1.20983 0.92526 0.96506 0.97897 1.21217 0.96022 1.05781 0.99460 1.19043 0.82357 0.96187 0.94836 1.86038 1.15594 1.72998 1.48774 1.23035 0.95992 0.96628 0.91112 1.20335 0.92801 1.03911 1.00076 1.20868 0.93633 0.97412 0.97184 0.92887 0.92716 0.91955 0.91633 0.90601 0.77766 0.95632 0.95605 0.92485 0.84929 0.85569 0.88428 0.92544 0.92722 0.85281 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.65 37.16 0.36 -1.69 16 2 C -0.10 -1.35 4.90 -26.73 -0.13 -1.48 16 3 C -0.07 -0.97 2.35 -92.93 -0.22 -1.19 16 4 H 0.09 1.14 7.87 -51.93 -0.41 0.73 16 5 C 0.51 10.14 5.62 -10.99 -0.06 10.07 16 6 O -0.55 -12.98 15.45 5.55 0.09 -12.90 16 7 N -0.71 -15.19 5.55 -61.47 -0.34 -15.53 16 8 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 9 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 10 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 13 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 C -0.11 -1.51 4.77 -104.60 -0.50 -2.01 16 18 C -0.06 -0.90 8.85 -39.60 -0.35 -1.25 16 19 C -0.21 -2.72 9.04 -39.43 -0.36 -3.08 16 20 C 0.12 1.59 6.69 -39.22 -0.26 1.32 16 21 O -0.32 -3.87 10.50 -19.41 -0.20 -4.07 16 22 C 0.03 0.23 9.81 101.05 0.99 1.22 16 23 C -0.15 -1.91 9.99 -39.44 -0.39 -2.30 16 24 C -0.07 -0.91 9.66 -39.61 -0.38 -1.29 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.01 7.43 -51.93 -0.39 0.62 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.12 7.12 -51.93 -0.37 0.75 16 30 H 0.39 7.26 8.32 -40.82 -0.34 6.92 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.13 2.07 7.15 -52.49 -0.38 1.70 16 35 H 0.13 1.40 6.30 -52.49 -0.33 1.07 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 38 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 39 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 40 H 0.13 1.30 7.94 -52.48 -0.42 0.88 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -32.60 337.40 -7.32 -39.92 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.91 Total: 5.55 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -1.75 Total: -8.51 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.40 Total: -41.06 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.12 Total: -16.97 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.60 -7.32 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427644661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.616 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds