Wall clock time and date at job start Mon Mar 30 2020 02:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46755 * 2 1 4 4 H 1.08998 * 109.47094 * 305.69841 * 3 2 1 5 5 C 1.50697 * 109.47151 * 65.70176 * 3 2 1 6 6 O 1.21284 * 120.00262 * 34.90425 * 5 3 2 7 7 N 1.34775 * 120.00014 * 214.90499 * 5 3 2 8 8 C 1.46501 * 120.00329 * 174.98255 * 7 5 3 9 9 C 1.50701 * 109.47510 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99561 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00212 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99839 * 359.97438 * 11 9 8 13 13 Si 1.86790 * 119.99904 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47495 * 90.00134 * 13 11 9 15 15 H 1.48501 * 109.46983 * 209.99869 * 13 11 9 16 16 H 1.48503 * 109.47281 * 329.99383 * 13 11 9 17 17 C 1.50702 * 109.46856 * 185.70034 * 3 2 1 18 18 C 1.38272 * 119.94155 * 299.72595 * 17 3 2 19 19 C 1.38149 * 120.05154 * 179.72271 * 18 17 3 20 20 C 1.38734 * 119.94395 * 0.55360 * 19 18 17 21 21 O 1.35895 * 120.05392 * 179.74518 * 20 19 18 22 22 C 1.42901 * 117.00174 * 359.97438 * 21 20 19 23 23 C 1.38730 * 119.88544 * 359.72155 * 20 19 18 24 24 C 1.38138 * 119.94847 * 359.97438 * 23 20 19 25 25 H 1.08996 * 109.46978 * 54.97930 * 1 2 3 26 26 H 1.08999 * 109.47056 * 174.98251 * 1 2 3 27 27 H 1.09000 * 109.47249 * 294.97980 * 1 2 3 28 28 H 1.09000 * 109.46907 * 239.99496 * 2 1 3 29 29 H 1.09005 * 109.46700 * 119.99906 * 2 1 3 30 30 H 0.97001 * 119.99765 * 354.97693 * 7 5 3 31 31 H 1.08998 * 109.46993 * 300.00077 * 8 7 5 32 32 H 1.09007 * 109.46900 * 59.99809 * 8 7 5 33 33 H 0.96995 * 119.99762 * 179.97438 * 12 11 9 34 34 H 1.07997 * 119.97736 * 0.02562 * 18 17 3 35 35 H 1.08000 * 120.02582 * 180.26835 * 19 18 17 36 36 H 1.08998 * 109.47355 * 179.97438 * 22 21 20 37 37 H 1.08999 * 109.47465 * 300.00044 * 22 21 20 38 38 H 1.09003 * 109.47346 * 60.00252 * 22 21 20 39 39 H 1.08007 * 120.02056 * 179.97438 * 23 20 19 40 40 H 1.08005 * 119.96971 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5957 1.9849 -0.8346 5 6 1.6561 2.1110 1.2949 6 8 1.6361 1.4711 2.3251 7 7 1.3352 3.4199 1.3083 8 6 0.8564 4.0441 2.5442 9 6 0.5702 5.5021 2.2925 10 1 0.7294 5.9218 1.3102 11 6 0.1061 6.3004 3.3164 12 7 -0.0872 5.7893 4.5126 13 14 -0.2493 8.1074 3.0041 14 1 -1.6614 8.2669 2.5731 15 1 -0.0227 8.8793 4.2523 16 1 0.6536 8.6126 1.9388 17 6 3.5403 1.4449 -0.1411 18 6 4.3240 0.8177 0.8099 19 6 5.6993 0.8136 0.6798 20 6 6.2946 1.4492 -0.4001 21 8 7.6476 1.4509 -0.5276 22 6 8.3958 0.7792 0.4878 23 6 5.5063 2.0826 -1.3499 24 6 4.1312 2.0785 -1.2186 25 1 -0.3633 0.5897 -0.8416 26 1 -0.3633 -1.0237 -0.0899 27 1 -0.3634 0.4340 0.9315 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.4212 3.9486 0.4997 31 1 -0.0555 3.5460 2.8733 32 1 1.6197 3.9522 3.3170 33 1 -0.4134 6.3510 5.2330 34 1 3.8603 0.3265 1.6526 35 1 6.3107 0.3199 1.4206 36 1 9.4601 0.8557 0.2655 37 1 8.1921 1.2403 1.4543 38 1 8.1059 -0.2711 0.5180 39 1 5.9675 2.5785 -2.1913 40 1 3.5172 2.5711 -1.9580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427644661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:20 Heat of formation + Delta-G solvation = -92.111063 kcal Electronic energy + Delta-G solvation = -21174.024803 eV Core-core repulsion = 17952.412226 eV Total energy + Delta-G solvation = -3221.612577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46682 -40.53580 -38.49052 -36.22786 -35.37210 -34.32178 -32.05270 -31.57606 -29.62883 -28.50751 -27.04698 -24.89103 -23.86282 -22.90863 -22.45153 -20.88219 -19.14393 -18.88719 -17.74162 -17.28176 -17.00529 -16.66211 -16.60963 -16.07786 -15.74008 -15.35131 -15.04063 -14.67510 -14.45738 -14.38274 -14.05310 -13.75053 -13.67129 -13.52002 -13.21838 -12.91820 -12.78249 -12.71591 -12.27000 -12.20609 -12.14800 -11.88051 -11.81228 -11.60836 -11.48506 -10.80199 -10.67577 -9.96182 -9.80763 -9.06954 -8.29383 -6.46010 0.36170 0.38948 1.42626 1.45134 1.56350 1.79703 2.32405 2.37291 2.56787 2.82522 3.05478 3.72213 3.78512 3.91320 3.98203 4.05149 4.29416 4.32870 4.36784 4.43115 4.46214 4.56791 4.67889 4.73037 4.74774 4.87899 5.06336 5.08355 5.12642 5.23670 5.27326 5.28283 5.37403 5.39489 5.50144 5.64237 5.72517 5.78150 5.85446 6.42041 6.65174 6.93446 7.23447 7.51094 8.82894 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.004356 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.567858 B = 6426.289693 C = 7414.343964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.098 4.098 3 C -0.051 4.051 4 H 0.124 0.876 5 C 0.507 3.493 6 O -0.596 6.596 7 N -0.708 5.708 8 C 0.268 3.732 9 C -0.556 4.556 10 H 0.083 0.917 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.984 3.016 14 H -0.269 1.269 15 H -0.284 1.284 16 H -0.256 1.256 17 C -0.122 4.122 18 C -0.081 4.081 19 C -0.213 4.213 20 C 0.115 3.885 21 O -0.331 6.331 22 C 0.018 3.982 23 C -0.157 4.157 24 C -0.065 4.065 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.406 0.594 31 H -0.012 1.012 32 H -0.018 1.018 33 H 0.268 0.732 34 H 0.111 0.889 35 H 0.139 0.861 36 H 0.123 0.877 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.151 0.849 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.758 -9.590 -15.326 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.136 4.136 3 C -0.073 4.073 4 H 0.142 0.858 5 C 0.294 3.706 6 O -0.478 6.478 7 N -0.357 5.357 8 C 0.145 3.855 9 C -0.593 4.593 10 H 0.102 0.898 11 C -0.195 4.195 12 N -0.570 5.570 13 Si 0.807 3.193 14 H -0.194 1.194 15 H -0.210 1.210 16 H -0.179 1.179 17 C -0.123 4.123 18 C -0.099 4.099 19 C -0.232 4.232 20 C 0.070 3.930 21 O -0.245 6.245 22 C -0.076 4.076 23 C -0.175 4.175 24 C -0.083 4.083 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.041 0.959 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.242 0.758 31 H 0.006 0.994 32 H 0.000 1.000 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.157 0.843 36 H 0.141 0.859 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.169 0.831 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 11.792 -9.904 -14.556 21.190 hybrid contribution -0.304 0.775 0.894 1.222 sum 11.488 -9.130 -13.662 20.049 Atomic orbital electron populations 1.21801 0.95376 1.02753 1.01066 1.21415 0.96086 0.93014 1.03074 1.20340 0.93256 0.98750 0.94918 0.85830 1.21261 0.75817 0.82004 0.91469 1.90603 1.55318 1.65254 1.36605 1.46258 1.65182 1.09759 1.14496 1.18503 0.91873 0.92602 0.82486 1.21623 1.45846 0.93826 0.98040 0.89849 1.26062 0.94483 1.04694 0.94297 1.70141 1.45607 1.38579 1.02698 0.85167 0.79046 0.77127 0.77964 1.19417 1.20994 1.17936 1.19445 0.93383 1.02258 0.97212 1.20961 0.93482 0.97561 0.97930 1.21346 0.95551 1.06110 1.00194 1.19264 0.83127 0.95849 0.94740 1.86031 1.15051 1.73394 1.49975 1.23318 0.96969 0.96913 0.90408 1.20690 0.92936 1.03469 1.00439 1.21173 0.94002 0.96247 0.96847 0.90943 0.90826 0.95917 0.88360 0.92812 0.75805 0.99430 0.99996 0.92277 0.87114 0.84295 0.85896 0.92652 0.91734 0.83140 0.81964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.65 71.98 0.69 -3.21 16 2 C -0.10 -2.53 4.90 30.59 0.15 -2.38 16 3 C -0.05 -1.45 2.35 -12.29 -0.03 -1.48 16 4 H 0.12 2.68 7.87 -2.39 -0.02 2.66 16 5 C 0.51 20.69 5.62 87.66 0.49 21.19 16 6 O -0.60 -29.72 15.45 -3.04 -0.05 -29.77 16 7 N -0.71 -30.80 5.55 -466.78 -2.59 -33.39 16 8 C 0.27 15.05 5.43 85.63 0.47 15.52 16 9 C -0.56 -30.68 9.28 25.60 0.24 -30.44 16 10 H 0.08 4.16 7.60 -2.91 -0.02 4.13 16 11 C 0.00 0.23 5.46 84.65 0.46 0.69 16 12 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 13 Si 0.98 42.67 29.54 68.60 2.03 44.69 16 14 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 17 C -0.12 -3.32 4.77 -19.85 -0.09 -3.41 16 18 C -0.08 -2.42 8.85 22.26 0.20 -2.22 16 19 C -0.21 -5.55 9.04 22.37 0.20 -5.35 16 20 C 0.12 2.85 6.69 22.51 0.15 3.00 16 21 O -0.33 -7.36 10.50 -92.37 -0.97 -8.33 16 22 C 0.02 0.27 9.81 113.37 1.11 1.38 16 23 C -0.16 -3.49 9.99 22.36 0.22 -3.27 16 24 C -0.06 -1.42 9.66 22.25 0.22 -1.20 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.02 0.74 7.43 -2.39 -0.02 0.72 16 28 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 1.63 7.12 -2.38 -0.02 1.61 16 30 H 0.41 14.72 8.32 -92.71 -0.77 13.95 16 31 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H -0.02 -1.14 8.14 -2.38 -0.02 -1.16 16 33 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 34 H 0.11 3.72 7.15 -2.91 -0.02 3.70 16 35 H 0.14 3.07 6.30 -2.91 -0.02 3.05 16 36 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 0.83 7.66 -2.39 -0.02 0.82 16 38 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 39 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.16 2.44 7.94 -2.91 -0.02 2.42 16 Total: -1.00 -74.44 337.40 3.45 -70.99 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.26 Total: 23.58 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 4.48 Total: -11.19 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -2.30 Total: -89.98 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -1.02 Total: -38.10 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -74.44 3.45 -70.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427644661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.122 kcal (2) G-P(sol) polarization free energy of solvation -74.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds