Wall clock time and date at job start Mon Mar 30 2020 02:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47567 * 2 1 4 4 H 1.09007 * 109.46647 * 305.00506 * 3 2 1 5 5 C 1.50694 * 109.47395 * 185.00511 * 3 2 1 6 6 O 1.21282 * 119.99546 * 239.99954 * 5 3 2 7 7 N 1.34780 * 119.99939 * 59.99568 * 5 3 2 8 8 C 1.46504 * 119.99487 * 180.02562 * 7 5 3 9 9 C 1.50700 * 109.46921 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99866 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99964 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99896 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99881 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47079 * 90.00214 * 13 11 9 15 15 H 1.48503 * 109.46677 * 210.00092 * 13 11 9 16 16 H 1.48494 * 109.47236 * 330.00179 * 13 11 9 17 17 C 1.50700 * 109.47143 * 64.99788 * 3 2 1 18 18 C 1.38266 * 119.94622 * 240.00460 * 17 3 2 19 19 C 1.38145 * 120.05239 * 180.02562 * 18 17 3 20 20 C 1.38725 * 119.94620 * 359.97438 * 19 18 17 21 21 O 1.35898 * 120.05592 * 179.97438 * 20 19 18 22 22 C 1.42902 * 117.00254 * 179.97438 * 21 20 19 23 23 C 1.38731 * 119.88981 * 359.97438 * 20 19 18 24 24 C 1.38143 * 119.94414 * 0.02562 * 23 20 19 25 25 H 1.09005 * 109.46412 * 299.99816 * 1 2 3 26 26 H 1.08990 * 109.47247 * 59.99714 * 1 2 3 27 27 H 1.09002 * 109.47333 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46691 * 239.99713 * 2 1 3 29 29 H 1.08999 * 109.47366 * 120.00461 * 2 1 3 30 30 H 0.96989 * 120.00312 * 0.02562 * 7 5 3 31 31 H 1.09002 * 109.47230 * 300.00043 * 8 7 5 32 32 H 1.08998 * 109.47065 * 60.00198 * 8 7 5 33 33 H 0.96993 * 119.99940 * 180.02562 * 12 11 9 34 34 H 1.08002 * 119.97130 * 0.27980 * 18 17 3 35 35 H 1.08000 * 120.02375 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.47182 * 59.99870 * 22 21 20 37 37 H 1.09001 * 109.47459 * 179.97438 * 22 21 20 38 38 H 1.09001 * 109.47097 * 299.99927 * 22 21 20 39 39 H 1.08001 * 120.02847 * 179.97438 * 23 20 19 40 40 H 1.08001 * 119.97044 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1240 6 8 4.2217 1.9434 0.7476 7 7 4.1297 0.8910 -1.2033 8 6 5.5898 0.8922 -1.3234 9 6 5.9884 0.2191 -2.6115 10 1 5.2300 -0.1710 -3.2741 11 6 7.3214 0.1003 -2.9435 12 7 7.6692 -0.4876 -4.0674 13 14 8.6331 0.7745 -1.7971 14 1 9.0358 -0.2795 -0.8316 15 1 9.8150 1.1961 -2.5911 16 1 8.0912 1.9425 -1.0575 17 6 1.6415 2.1163 1.2877 18 6 0.8401 3.2426 1.2579 19 6 0.4738 3.8624 2.4370 20 6 0.9101 3.3534 3.6515 21 8 0.5515 3.9616 4.8127 22 6 1.0370 3.3821 6.0254 23 6 1.7132 2.2225 3.6787 24 6 2.0768 1.6064 2.4969 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.5861 0.4920 -1.9005 31 1 5.9535 1.9198 -1.3232 32 1 6.0241 0.3529 -0.4817 33 1 8.6069 -0.5715 -4.3008 34 1 0.4970 3.6359 0.3124 35 1 -0.1525 4.7419 2.4132 36 1 2.1270 3.3842 6.0182 37 1 0.6786 3.9636 6.8749 38 1 0.6761 2.3569 6.1082 39 1 2.0545 1.8245 4.6229 40 1 2.7023 0.7262 2.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427644663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:24 Heat of formation + Delta-G solvation = -64.210631 kcal Electronic energy + Delta-G solvation = -21169.227316 eV Core-core repulsion = 17948.824592 eV Total energy + Delta-G solvation = -3220.402724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39598 -39.26266 -37.41307 -34.64065 -34.28303 -32.30693 -31.03780 -30.21524 -28.54506 -27.59851 -26.14052 -23.05044 -22.36668 -22.04872 -20.88737 -19.51528 -18.20177 -17.31368 -16.47982 -16.10448 -15.82330 -15.60039 -14.83110 -14.76581 -14.41777 -14.14817 -13.99466 -13.68315 -13.28850 -13.17123 -12.68884 -12.61723 -12.34608 -12.14543 -12.08247 -11.85238 -11.61996 -11.24291 -11.02709 -10.95289 -10.80041 -10.69211 -10.61218 -9.97493 -9.49899 -9.16173 -8.87941 -8.78169 -8.13678 -8.04260 -6.22217 -4.24314 1.40509 1.48369 3.18662 3.22563 3.26879 3.32790 3.41592 3.71976 4.13686 4.32932 4.68886 4.75685 4.87748 4.93146 4.97455 5.07598 5.10802 5.13350 5.26614 5.31385 5.44034 5.44303 5.51506 5.65260 5.73361 5.79515 5.98638 6.07891 6.09883 6.23376 6.31078 6.42395 6.72258 6.76784 6.82671 7.07169 7.23205 7.35113 7.39569 8.13627 8.52119 8.74913 8.94758 9.38236 10.89780 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.003935 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.752409 B = 7114.025804 C = 7879.167387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.067 4.067 4 H 0.101 0.899 5 C 0.503 3.497 6 O -0.550 6.550 7 N -0.705 5.705 8 C 0.221 3.779 9 C -0.543 4.543 10 H 0.080 0.920 11 C 0.078 3.922 12 N -0.893 5.893 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.261 1.261 17 C -0.089 4.089 18 C -0.075 4.075 19 C -0.155 4.155 20 C 0.119 3.881 21 O -0.322 6.322 22 C 0.028 3.972 23 C -0.208 4.208 24 C -0.043 4.043 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.396 0.604 31 H 0.024 0.976 32 H 0.020 0.980 33 H 0.268 0.732 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.124 0.876 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.803 4.226 14.109 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.089 4.089 4 H 0.119 0.881 5 C 0.288 3.712 6 O -0.429 6.429 7 N -0.353 5.353 8 C 0.098 3.902 9 C -0.581 4.581 10 H 0.098 0.902 11 C -0.126 4.126 12 N -0.530 5.530 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.185 1.185 17 C -0.089 4.089 18 C -0.093 4.093 19 C -0.174 4.174 20 C 0.074 3.926 21 O -0.235 6.235 22 C -0.067 4.067 23 C -0.227 4.227 24 C -0.061 4.061 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.142 0.858 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.232 4.690 14.630 22.350 hybrid contribution 0.835 -0.105 0.232 0.873 sum -15.397 4.585 14.862 21.885 Atomic orbital electron populations 1.21763 0.95088 1.01660 1.02084 1.21550 0.96479 0.93865 1.03210 1.20360 0.93761 0.97920 0.96834 0.88130 1.20382 0.89475 0.78824 0.82529 1.90665 1.65433 1.46162 1.40592 1.46179 1.09791 1.57819 1.21518 1.19481 0.76055 0.97200 0.97423 1.21097 0.93809 1.39101 1.04078 0.90246 1.24797 0.98436 0.94282 0.95100 1.69879 1.17735 1.42545 1.22836 0.86822 0.81378 0.80468 0.81062 1.19874 1.20890 1.18525 1.19219 0.99326 0.96588 0.93808 1.20806 0.96763 0.94279 0.97424 1.20283 1.05029 1.02451 0.89629 1.18996 0.95260 0.92308 0.86005 1.86032 1.71166 1.53372 1.12960 1.23019 0.99691 0.99163 0.84831 1.21160 1.03823 0.98307 0.99391 1.20709 0.95540 0.98796 0.91047 0.92466 0.92541 0.92609 0.90722 0.91348 0.77022 0.95778 0.96245 0.92265 0.85488 0.85491 0.92637 0.88501 0.92761 0.85778 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.73 37.16 0.36 -1.07 16 2 C -0.11 -1.33 5.24 -26.73 -0.14 -1.47 16 3 C -0.07 -0.93 2.38 -92.93 -0.22 -1.15 16 4 H 0.10 1.20 7.87 -51.92 -0.41 0.79 16 5 C 0.50 9.47 7.02 -10.99 -0.08 9.40 16 6 O -0.55 -12.43 15.11 5.56 0.08 -12.35 16 7 N -0.70 -14.09 5.41 -61.47 -0.33 -14.43 16 8 C 0.22 5.42 4.50 -5.19 -0.02 5.39 16 9 C -0.54 -14.83 9.83 -34.44 -0.34 -15.17 16 10 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 11 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 12 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 13 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 17 C -0.09 -1.24 3.38 -104.60 -0.35 -1.59 16 18 C -0.07 -0.93 9.66 -39.61 -0.38 -1.32 16 19 C -0.16 -1.94 9.99 -39.44 -0.39 -2.34 16 20 C 0.12 1.56 6.69 -39.22 -0.26 1.29 16 21 O -0.32 -3.84 10.50 -19.42 -0.20 -4.05 16 22 C 0.03 0.23 9.81 101.05 0.99 1.22 16 23 C -0.21 -2.72 9.04 -39.43 -0.36 -3.08 16 24 C -0.04 -0.62 7.86 -39.61 -0.31 -0.93 16 25 H 0.06 0.57 7.38 -51.93 -0.38 0.19 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.86 7.43 -51.93 -0.39 0.48 16 29 H 0.07 0.83 7.22 -51.93 -0.37 0.46 16 30 H 0.40 6.95 7.68 -40.82 -0.31 6.64 16 31 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 32 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.13 1.29 7.94 -52.49 -0.42 0.88 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 39 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 40 H 0.12 1.79 7.48 -52.49 -0.39 1.40 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -32.87 331.82 -6.79 -39.66 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.84 Total: 3.73 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.60 Total: -8.71 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.44 Total: -40.12 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.12 Total: -16.40 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.87 -6.79 -39.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427644663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.551 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds