Wall clock time and date at job start Mon Mar 30 2020 02:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47567 * 2 1 4 4 H 1.09007 * 109.46647 * 305.00506 * 3 2 1 5 5 C 1.50694 * 109.47395 * 185.00511 * 3 2 1 6 6 O 1.21282 * 119.99546 * 239.99954 * 5 3 2 7 7 N 1.34780 * 119.99939 * 59.99568 * 5 3 2 8 8 C 1.46504 * 119.99487 * 180.02562 * 7 5 3 9 9 C 1.50700 * 109.46921 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99866 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99964 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99896 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99881 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47079 * 90.00214 * 13 11 9 15 15 H 1.48503 * 109.46677 * 210.00092 * 13 11 9 16 16 H 1.48494 * 109.47236 * 330.00179 * 13 11 9 17 17 C 1.50700 * 109.47143 * 64.99788 * 3 2 1 18 18 C 1.38266 * 119.94622 * 240.00460 * 17 3 2 19 19 C 1.38145 * 120.05239 * 180.02562 * 18 17 3 20 20 C 1.38725 * 119.94620 * 359.97438 * 19 18 17 21 21 O 1.35898 * 120.05592 * 179.97438 * 20 19 18 22 22 C 1.42902 * 117.00254 * 179.97438 * 21 20 19 23 23 C 1.38731 * 119.88981 * 359.97438 * 20 19 18 24 24 C 1.38143 * 119.94414 * 0.02562 * 23 20 19 25 25 H 1.09005 * 109.46412 * 299.99816 * 1 2 3 26 26 H 1.08990 * 109.47247 * 59.99714 * 1 2 3 27 27 H 1.09002 * 109.47333 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46691 * 239.99713 * 2 1 3 29 29 H 1.08999 * 109.47366 * 120.00461 * 2 1 3 30 30 H 0.96989 * 120.00312 * 0.02562 * 7 5 3 31 31 H 1.09002 * 109.47230 * 300.00043 * 8 7 5 32 32 H 1.08998 * 109.47065 * 60.00198 * 8 7 5 33 33 H 0.96993 * 119.99940 * 180.02562 * 12 11 9 34 34 H 1.08002 * 119.97130 * 0.27980 * 18 17 3 35 35 H 1.08000 * 120.02375 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.47182 * 59.99870 * 22 21 20 37 37 H 1.09001 * 109.47459 * 179.97438 * 22 21 20 38 38 H 1.09001 * 109.47097 * 299.99927 * 22 21 20 39 39 H 1.08001 * 120.02847 * 179.97438 * 23 20 19 40 40 H 1.08001 * 119.97044 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1240 6 8 4.2217 1.9434 0.7476 7 7 4.1297 0.8910 -1.2033 8 6 5.5898 0.8922 -1.3234 9 6 5.9884 0.2191 -2.6115 10 1 5.2300 -0.1710 -3.2741 11 6 7.3214 0.1003 -2.9435 12 7 7.6692 -0.4876 -4.0674 13 14 8.6331 0.7745 -1.7971 14 1 9.0358 -0.2795 -0.8316 15 1 9.8150 1.1961 -2.5911 16 1 8.0912 1.9425 -1.0575 17 6 1.6415 2.1163 1.2877 18 6 0.8401 3.2426 1.2579 19 6 0.4738 3.8624 2.4370 20 6 0.9101 3.3534 3.6515 21 8 0.5515 3.9616 4.8127 22 6 1.0370 3.3821 6.0254 23 6 1.7132 2.2225 3.6787 24 6 2.0768 1.6064 2.4969 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.5861 0.4920 -1.9005 31 1 5.9535 1.9198 -1.3232 32 1 6.0241 0.3529 -0.4817 33 1 8.6069 -0.5715 -4.3008 34 1 0.4970 3.6359 0.3124 35 1 -0.1525 4.7419 2.4132 36 1 2.1270 3.3842 6.0182 37 1 0.6786 3.9636 6.8749 38 1 0.6761 2.3569 6.1082 39 1 2.0545 1.8245 4.6229 40 1 2.7023 0.7262 2.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427644663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:23 Heat of formation + Delta-G solvation = -85.784841 kcal Electronic energy + Delta-G solvation = -21170.162844 eV Core-core repulsion = 17948.824592 eV Total energy + Delta-G solvation = -3221.338251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.48702 -40.50314 -38.51124 -36.14055 -35.68545 -34.32782 -32.00405 -31.13526 -30.25700 -28.55759 -27.27237 -24.23043 -23.98194 -22.97014 -22.25664 -20.93326 -19.17421 -19.03222 -17.81888 -17.53166 -16.89491 -16.62043 -16.36718 -16.12959 -15.79497 -15.45557 -15.06772 -14.87532 -14.54328 -14.40709 -14.27820 -14.04413 -13.48962 -13.40525 -13.09894 -12.88993 -12.84167 -12.70945 -12.53801 -12.10242 -11.95193 -11.86065 -11.68483 -11.59969 -11.57671 -10.92405 -10.67941 -9.92749 -9.87094 -9.02605 -8.40574 -6.47117 0.42839 0.47022 1.31075 1.33729 1.46119 1.74160 2.27007 2.38674 2.45212 2.90741 2.94954 3.62871 3.77996 3.93737 4.01782 4.09226 4.29070 4.34343 4.37393 4.44059 4.54047 4.57881 4.65389 4.72676 4.77328 4.82731 4.93734 5.02750 5.11582 5.16254 5.22994 5.26058 5.34491 5.41584 5.46431 5.53553 5.71906 5.83143 6.08962 6.45739 6.54136 6.86114 7.15710 7.42810 8.74189 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.003935 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.752409 B = 7114.025804 C = 7879.167387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.054 4.054 4 H 0.126 0.874 5 C 0.503 3.497 6 O -0.589 6.589 7 N -0.704 5.704 8 C 0.233 3.767 9 C -0.545 4.545 10 H 0.061 0.939 11 C 0.027 3.973 12 N -0.931 5.931 13 Si 0.936 3.064 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.263 1.263 17 C -0.105 4.105 18 C -0.074 4.074 19 C -0.162 4.162 20 C 0.112 3.888 21 O -0.333 6.333 22 C 0.019 3.981 23 C -0.216 4.216 24 C -0.061 4.061 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.408 0.592 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.272 0.728 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.055 0.945 37 H 0.122 0.878 38 H 0.064 0.936 39 H 0.139 0.861 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.145 5.011 15.033 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C -0.075 4.075 4 H 0.144 0.856 5 C 0.290 3.710 6 O -0.470 6.470 7 N -0.354 5.354 8 C 0.109 3.891 9 C -0.583 4.583 10 H 0.079 0.921 11 C -0.173 4.173 12 N -0.570 5.570 13 Si 0.760 3.240 14 H -0.190 1.190 15 H -0.198 1.198 16 H -0.187 1.187 17 C -0.105 4.105 18 C -0.091 4.091 19 C -0.180 4.180 20 C 0.067 3.933 21 O -0.247 6.247 22 C -0.075 4.075 23 C -0.234 4.234 24 C -0.079 4.079 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.244 0.756 31 H 0.028 0.972 32 H 0.027 0.973 33 H 0.082 0.918 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.082 0.918 39 H 0.156 0.844 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.608 5.464 15.554 24.121 hybrid contribution 1.190 -0.344 -0.001 1.239 sum -16.417 5.120 15.553 23.187 Atomic orbital electron populations 1.21704 0.92995 1.02543 1.02590 1.21556 0.98188 0.92292 1.02831 1.20342 0.89472 0.99713 0.97973 0.85573 1.21273 0.91620 0.77073 0.81028 1.90642 1.66960 1.47598 1.41751 1.46030 1.08099 1.58539 1.22692 1.19070 0.78904 0.95631 0.95523 1.21294 0.93603 1.38675 1.04696 0.92101 1.25577 1.00673 0.94609 0.96447 1.69977 1.18543 1.43957 1.24475 0.85884 0.79022 0.79831 0.79305 1.19009 1.19768 1.18733 1.19312 1.00304 0.97474 0.93451 1.21087 0.95997 0.93408 0.98646 1.20603 1.04990 1.02941 0.89505 1.19200 0.95036 0.92212 0.86845 1.86021 1.71343 1.53801 1.13555 1.23302 0.99873 1.00252 0.84092 1.21322 1.03927 0.98498 0.99663 1.20752 0.96151 0.98961 0.92047 0.92772 0.91155 0.91591 0.90562 0.92340 0.75580 0.97230 0.97258 0.91849 0.82956 0.83680 0.92657 0.85998 0.91762 0.84360 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.73 71.98 0.70 -1.67 16 2 C -0.11 -2.44 5.24 30.59 0.16 -2.28 16 3 C -0.05 -1.41 2.38 -12.29 -0.03 -1.44 16 4 H 0.13 2.65 7.87 -2.38 -0.02 2.63 16 5 C 0.50 18.69 7.02 87.65 0.62 19.31 16 6 O -0.59 -26.73 15.11 -3.03 -0.05 -26.77 16 7 N -0.70 -27.98 5.41 -466.78 -2.53 -30.50 16 8 C 0.23 11.47 4.50 85.63 0.38 11.85 16 9 C -0.54 -30.04 9.83 25.60 0.25 -29.79 16 10 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 11 C 0.03 1.54 5.47 84.66 0.46 2.01 16 12 N -0.93 -55.56 13.96 21.45 0.30 -55.26 16 13 Si 0.94 44.36 27.47 68.60 1.88 46.25 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 16 H -0.26 -12.46 6.54 99.48 0.65 -11.81 16 17 C -0.10 -2.80 3.38 -19.85 -0.07 -2.86 16 18 C -0.07 -1.68 9.66 22.25 0.22 -1.47 16 19 C -0.16 -3.73 9.99 22.36 0.22 -3.51 16 20 C 0.11 2.78 6.69 22.50 0.15 2.93 16 21 O -0.33 -7.42 10.50 -92.40 -0.97 -8.39 16 22 C 0.02 0.28 9.81 113.37 1.11 1.39 16 23 C -0.22 -5.48 9.04 22.37 0.20 -5.28 16 24 C -0.06 -1.73 7.86 22.25 0.18 -1.56 16 25 H 0.05 0.96 7.38 -2.38 -0.02 0.94 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.65 7.43 -2.38 -0.02 1.63 16 29 H 0.06 1.40 7.22 -2.39 -0.02 1.38 16 30 H 0.41 14.11 7.68 -92.72 -0.71 13.40 16 31 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 32 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.15 2.60 7.94 -2.91 -0.02 2.57 16 35 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.05 0.80 7.66 -2.38 -0.02 0.78 16 37 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 39 H 0.14 2.93 6.30 -2.91 -0.02 2.91 16 40 H 0.11 3.29 7.48 -2.91 -0.02 3.27 16 Total: -1.00 -70.59 331.82 3.47 -67.12 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.27 Total: 19.93 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 4.56 Total: -12.37 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -2.23 Total: -85.76 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.02 Total: -35.16 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Total: -70.59 3.47 -67.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427644663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.668 kcal (2) G-P(sol) polarization free energy of solvation -70.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds