Wall clock time and date at job start Mon Mar 30 2020 01:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46748 * 2 1 4 4 C 1.52998 * 109.47188 * 239.99635 * 2 1 3 5 5 C 1.50697 * 109.47223 * 60.00053 * 4 2 1 6 6 H 1.08003 * 120.00027 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00037 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00079 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00056 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47147 * 59.99792 * 9 7 5 11 11 H 1.48497 * 109.47198 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47009 * 300.00225 * 9 7 5 13 13 C 1.53003 * 109.46799 * 119.99651 * 2 1 3 14 14 N 1.46497 * 109.47085 * 300.00085 * 13 2 1 15 15 C 1.34779 * 120.00169 * 180.02562 * 14 13 2 16 16 O 1.21595 * 119.99564 * 359.97438 * 15 14 13 17 17 C 1.47527 * 120.00212 * 179.97438 * 15 14 13 18 18 C 1.39712 * 120.19556 * 0.02562 * 17 15 14 19 19 C 1.37785 * 119.91095 * 179.97438 * 18 17 15 20 20 C 1.38543 * 120.29933 * 359.97438 * 19 18 17 21 21 C 1.38054 * 120.39305 * 0.02562 * 20 19 18 22 22 C 1.38702 * 120.08532 * 359.97438 * 21 20 19 23 23 O 1.35654 * 120.15510 * 180.02562 * 22 21 20 24 24 H 1.08996 * 109.47394 * 300.00260 * 1 2 3 25 25 H 1.09002 * 109.46917 * 60.00914 * 1 2 3 26 26 H 1.09004 * 109.47157 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46723 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47120 * 299.98960 * 3 2 1 29 29 H 1.08995 * 109.47843 * 60.00010 * 3 2 1 30 30 H 1.09001 * 109.47067 * 180.02562 * 4 2 1 31 31 H 1.08992 * 109.47059 * 299.99981 * 4 2 1 32 32 H 0.97001 * 120.00388 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.46506 * 180.02562 * 13 2 1 34 34 H 1.08992 * 109.47343 * 60.00083 * 13 2 1 35 35 H 0.97003 * 120.00315 * 359.97438 * 14 13 2 36 36 H 1.08000 * 120.04117 * 0.25125 * 18 17 15 37 37 H 1.07998 * 119.84718 * 179.97438 * 19 18 17 38 38 H 1.08003 * 119.80265 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.96043 * 180.02562 * 21 20 19 40 40 H 0.96694 * 114.00099 * 89.99988 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0110 -2.4797 6 1 0.9165 0.8669 -2.3807 7 6 1.8713 -0.4818 -3.7319 8 7 2.6282 -1.5505 -3.8525 9 14 1.2493 0.3990 -5.2572 10 1 1.7443 1.7991 -5.2567 11 1 1.7442 -0.3011 -6.4696 12 1 -0.2358 0.3991 -5.2577 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8775 -0.4906 3.6696 16 8 2.5766 -1.4792 3.7812 17 6 1.3862 0.2053 4.8741 18 6 0.5823 1.3412 4.7505 19 6 0.1262 1.9863 5.8794 20 6 0.4606 1.5133 7.1379 21 6 1.2542 0.3919 7.2745 22 6 1.7222 -0.2700 6.1490 23 8 2.5016 -1.3723 6.2815 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 3.1301 -0.7217 -1.2489 31 1 1.6768 -1.7489 -1.2491 32 1 2.8626 -1.8820 -4.7334 33 1 3.1299 -0.7208 1.2495 34 1 1.6767 -1.7488 1.2494 35 1 0.9942 0.7584 2.3564 36 1 0.3151 1.7106 3.7715 37 1 -0.4948 2.8645 5.7827 38 1 0.0990 2.0253 8.0174 39 1 1.5103 0.0290 8.2589 40 1 2.0063 -2.2019 6.3199 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436720573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:11 Heat of formation + Delta-G solvation = -91.348323 kcal Electronic energy + Delta-G solvation = -21250.895728 eV Core-core repulsion = 18029.316225 eV Total energy + Delta-G solvation = -3221.579502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49283 -39.87953 -38.47053 -37.63073 -35.26029 -34.03354 -32.16499 -30.74896 -29.09770 -27.97699 -27.71466 -25.34200 -24.26549 -23.29213 -21.53648 -20.18449 -19.28071 -18.46501 -18.34385 -17.21850 -16.68522 -16.52170 -16.28284 -15.99753 -15.86270 -15.23143 -14.97143 -14.86752 -14.56143 -14.16608 -13.94300 -13.82483 -13.26094 -13.11859 -12.83710 -12.75815 -12.62542 -12.59061 -12.33816 -12.22894 -12.01721 -11.73001 -11.55065 -11.13569 -10.90842 -10.72319 -10.50652 -10.22322 -9.94277 -9.64038 -8.13654 -6.21966 -0.19729 0.29340 1.43062 1.45359 1.52558 1.87481 2.15548 2.45397 2.76265 3.20722 3.28367 3.69337 3.84366 3.98169 4.06142 4.13501 4.20411 4.39208 4.45050 4.66642 4.69670 4.70965 4.81157 4.92190 4.94316 5.08455 5.11062 5.26142 5.34623 5.36702 5.44932 5.45797 5.49208 5.51959 5.56346 5.79161 5.82494 5.89462 6.29796 6.54700 6.80061 6.93071 7.21637 7.45969 8.98840 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037113 B = 0.003459 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.271008 B = 8093.587690 C = 8648.954227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.515 4.515 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.265 1.265 13 C 0.142 3.858 14 N -0.705 5.705 15 C 0.546 3.454 16 O -0.574 6.574 17 C -0.190 4.190 18 C -0.073 4.073 19 C -0.133 4.133 20 C -0.069 4.069 21 C -0.161 4.161 22 C 0.142 3.858 23 O -0.501 6.501 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.035 0.965 28 H 0.059 0.941 29 H 0.069 0.931 30 H -0.016 1.016 31 H -0.014 1.014 32 H 0.260 0.740 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.411 0.589 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.151 0.849 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.123 9.802 22.358 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.093 0.907 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.218 1.218 12 H -0.190 1.190 13 C 0.018 3.982 14 N -0.358 5.358 15 C 0.335 3.665 16 O -0.455 6.455 17 C -0.194 4.194 18 C -0.091 4.091 19 C -0.151 4.151 20 C -0.087 4.087 21 C -0.179 4.179 22 C 0.096 3.904 23 O -0.314 6.314 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.003 0.997 31 H 0.004 0.996 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.250 0.750 36 H 0.164 0.836 37 H 0.183 0.817 38 H 0.184 0.816 39 H 0.169 0.831 40 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -8.098 9.384 22.272 25.489 hybrid contribution -0.155 -0.535 -1.415 1.521 sum -8.253 8.849 20.857 24.113 Atomic orbital electron populations 1.21701 0.93353 1.01074 1.01759 1.20720 0.96889 0.96299 0.92614 1.21706 0.99891 0.94626 1.01747 1.18959 0.94201 0.94212 0.92335 1.21568 1.30531 1.12195 0.91002 0.90743 1.25968 0.95624 0.95851 1.02795 1.70118 1.38719 1.25060 1.24184 0.85579 0.79010 0.78741 0.78189 1.19081 1.21792 1.19005 1.21234 0.97689 0.95467 0.83819 1.45882 1.53189 1.32119 1.04627 1.18663 0.79938 0.83903 0.84026 1.90771 1.39393 1.27978 1.87319 1.20440 1.05332 1.01080 0.92510 1.21545 0.93913 0.92414 1.01257 1.21538 1.00860 1.01253 0.91427 1.21698 0.94004 0.93789 0.99180 1.21692 0.99579 0.98348 0.98278 1.18898 0.90316 0.89782 0.91375 1.84701 1.35099 1.16265 1.95303 0.91160 0.92265 0.94393 0.94593 0.92209 0.91222 0.99748 0.99596 0.93166 0.93843 0.93449 0.75006 0.83580 0.81743 0.81600 0.83098 0.73596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 2 C -0.06 -2.47 0.54 -52.18 -0.03 -2.50 16 3 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 4 C 0.04 2.08 4.04 29.85 0.12 2.20 16 5 C -0.51 -27.60 7.65 25.60 0.20 -27.40 16 6 H 0.07 3.69 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 8 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 9 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 C 0.14 5.28 4.56 86.38 0.39 5.68 16 14 N -0.70 -20.80 4.91 -466.28 -2.29 -23.09 16 15 C 0.55 17.69 7.76 86.69 0.67 18.37 16 16 O -0.57 -23.53 15.16 16.90 0.26 -23.27 16 17 C -0.19 -4.69 5.89 -20.01 -0.12 -4.81 16 18 C -0.07 -1.21 9.54 22.52 0.21 -1.00 16 19 C -0.13 -1.49 10.02 22.24 0.22 -1.27 16 20 C -0.07 -0.73 10.03 22.30 0.22 -0.51 16 21 C -0.16 -2.51 9.98 22.34 0.22 -2.29 16 22 C 0.14 3.34 6.72 22.84 0.15 3.50 16 23 O -0.50 -13.29 11.58 -68.77 -0.80 -14.08 16 24 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 25 H 0.06 2.09 6.62 -2.39 -0.02 2.07 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 2.13 6.62 -2.39 -0.02 2.11 16 29 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 30 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 31 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 32 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.41 9.31 4.19 -92.71 -0.39 8.92 16 36 H 0.15 1.83 6.40 -2.91 -0.02 1.81 16 37 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 38 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 39 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.40 7.82 9.06 -74.06 -0.67 7.15 16 Total: -1.00 -75.51 327.70 3.38 -72.12 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.00 Total: 16.99 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 3.90 Total: -16.91 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -2.00 Total: -80.34 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -0.54 Total: -37.35 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -75.51 3.38 -72.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436720573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.224 kcal (2) G-P(sol) polarization free energy of solvation -75.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds