Wall clock time and date at job start Mon Mar 30 2020 01:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47128 * 2 1 4 4 C 1.52998 * 109.47287 * 174.99589 * 3 2 1 5 5 C 1.53001 * 109.47416 * 184.99904 * 4 3 2 6 6 O 1.42902 * 109.47166 * 294.99720 * 3 2 1 7 7 C 1.35708 * 117.00245 * 93.72158 * 6 3 2 8 8 C 1.39013 * 119.90722 * 182.46524 * 7 6 3 9 9 C 1.37689 * 120.09131 * 179.76600 * 8 7 6 10 10 C 1.39792 * 119.90640 * 0.52861 * 9 8 7 11 11 C 1.47500 * 120.09386 * 179.70145 * 10 9 8 12 12 O 1.21621 * 120.00135 * 180.02562 * 11 10 9 13 13 N 1.34776 * 119.99881 * 0.02562 * 11 10 9 14 14 C 1.36899 * 120.00110 * 179.97438 * 13 11 10 15 15 H 1.08007 * 119.99782 * 0.02562 * 14 13 11 16 16 C 1.39024 * 120.00412 * 179.97438 * 14 13 11 17 17 N 1.31385 * 119.99696 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00121 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46829 * 90.00512 * 18 16 14 20 20 H 1.48499 * 109.46901 * 210.00197 * 18 16 14 21 21 H 1.48495 * 109.47343 * 330.00801 * 18 16 14 22 22 C 1.39794 * 119.81490 * 359.72254 * 10 9 8 23 23 C 1.37692 * 119.90250 * 0.02562 * 22 10 9 24 24 H 1.09000 * 109.47032 * 179.97438 * 1 2 3 25 25 H 1.08989 * 109.47306 * 300.00207 * 1 2 3 26 26 H 1.09005 * 109.47043 * 60.00288 * 1 2 3 27 27 H 1.09002 * 109.47730 * 239.99343 * 2 1 3 28 28 H 1.09005 * 109.47043 * 119.99712 * 2 1 3 29 29 H 1.08995 * 109.47330 * 54.99454 * 3 2 1 30 30 H 1.08999 * 109.47368 * 304.99512 * 4 3 2 31 31 H 1.09005 * 109.47048 * 65.00110 * 4 3 2 32 32 H 1.09006 * 109.47675 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.46996 * 300.00198 * 5 4 3 34 34 H 1.08999 * 109.47515 * 59.99928 * 5 4 3 35 35 H 1.07994 * 119.95041 * 359.97438 * 8 7 6 36 36 H 1.08010 * 120.04336 * 180.22667 * 9 8 7 37 37 H 0.97000 * 119.99966 * 0.02562 * 13 11 10 38 38 H 0.96999 * 120.00095 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.04873 * 179.97438 * 22 10 9 40 40 H 1.08000 * 119.95213 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 0.1258 5 6 4.0644 2.8850 0.2512 6 8 1.6620 2.0813 -1.2211 7 6 0.5031 2.7874 -1.2140 8 6 0.0517 3.3904 -2.3824 9 6 -1.1261 4.1036 -2.3806 10 6 -1.8625 4.2302 -1.1992 11 6 -3.1214 4.9988 -1.1911 12 8 -3.7605 5.1083 -0.1621 13 7 -3.5634 5.5799 -2.3240 14 6 -4.7321 6.2929 -2.3166 15 1 -5.2996 6.3900 -1.4028 16 6 -5.1878 6.8927 -3.4850 17 7 -4.4972 6.7749 -4.5965 18 14 -6.7828 7.8649 -3.4751 19 1 -6.4945 9.2856 -3.1528 20 1 -7.4221 7.7807 -4.8128 21 1 -7.6997 7.3015 -2.4519 22 6 -1.4023 3.6266 -0.0252 23 6 -0.2261 2.9108 -0.0370 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6053 1.9815 0.8417 30 1 3.8570 0.8801 1.0115 31 1 4.0030 0.9836 -0.7595 32 1 5.1509 2.8864 0.3404 33 1 3.7722 3.4493 -0.6344 34 1 3.6263 3.3459 1.1365 35 1 0.6239 3.2964 -3.2934 36 1 -1.4780 4.5687 -3.2897 37 1 -3.0539 5.4923 -3.1447 38 1 -4.8153 7.1931 -5.4118 39 1 -1.9680 3.7223 0.8898 40 1 0.1304 2.4445 0.8696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449822336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:10 Heat of formation + Delta-G solvation = -84.103328 kcal Electronic energy + Delta-G solvation = -21182.105025 eV Core-core repulsion = 17960.839689 eV Total energy + Delta-G solvation = -3221.265336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.57426 -40.30173 -38.26200 -36.10981 -35.37731 -33.51839 -33.09884 -31.88334 -31.02947 -27.57515 -26.98036 -24.47415 -23.95256 -22.91334 -21.77925 -20.90456 -20.21133 -19.42989 -18.12477 -16.96569 -16.89937 -16.56937 -15.93711 -15.79579 -15.49237 -15.36770 -14.89314 -14.71375 -14.55600 -14.37055 -14.03301 -13.68865 -13.61162 -13.37512 -13.14629 -13.02294 -12.81454 -12.48134 -12.47989 -12.18685 -12.12386 -12.01475 -11.78523 -11.59577 -11.30749 -11.21120 -10.52155 -10.11891 -10.03937 -9.12926 -8.54930 -6.00247 0.02751 0.36648 1.39733 1.40644 1.54449 2.06246 2.21393 2.26974 2.83405 3.14736 3.30806 3.63302 3.77140 3.84055 3.95872 4.09270 4.21341 4.27415 4.33903 4.38181 4.49918 4.54665 4.57504 4.65479 4.89950 4.93486 5.00935 5.06846 5.10190 5.14559 5.17384 5.26452 5.30015 5.36650 5.38327 5.44645 5.50233 5.68877 5.95065 6.46921 6.51170 7.02915 7.44720 8.01140 8.62601 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035663 B = 0.003459 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.936392 B = 8092.335016 C = 8308.732217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.066 3.934 4 C -0.116 4.116 5 C -0.157 4.157 6 O -0.307 6.307 7 C 0.153 3.847 8 C -0.160 4.160 9 C -0.059 4.059 10 C -0.168 4.168 11 C 0.469 3.531 12 O -0.641 6.641 13 N -0.555 5.555 14 C -0.339 4.339 15 H 0.083 0.917 16 C -0.010 4.010 17 N -0.913 5.913 18 Si 1.000 3.000 19 H -0.268 1.268 20 H -0.267 1.267 21 H -0.271 1.271 22 C -0.040 4.040 23 C -0.205 4.205 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.152 0.848 36 H 0.130 0.870 37 H 0.397 0.603 38 H 0.282 0.718 39 H 0.125 0.875 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.263 -12.476 5.887 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.174 4.174 3 C 0.010 3.990 4 C -0.153 4.153 5 C -0.214 4.214 6 O -0.221 6.221 7 C 0.106 3.894 8 C -0.178 4.178 9 C -0.079 4.079 10 C -0.172 4.172 11 C 0.259 3.741 12 O -0.531 6.531 13 N -0.190 5.190 14 C -0.468 4.468 15 H 0.101 0.899 16 C -0.211 4.211 17 N -0.552 5.552 18 Si 0.822 3.178 19 H -0.193 1.193 20 H -0.191 1.191 21 H -0.196 1.196 22 C -0.059 4.059 23 C -0.223 4.223 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.170 0.830 36 H 0.148 0.852 37 H 0.233 0.767 38 H 0.092 0.908 39 H 0.142 0.858 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 16.945 -12.352 6.165 21.857 hybrid contribution -0.937 0.650 -0.453 1.227 sum 16.009 -11.702 5.712 20.636 Atomic orbital electron populations 1.21984 0.96291 1.02285 1.01535 1.22033 0.95741 0.95385 1.04276 1.23018 0.97008 0.93384 0.85562 1.21690 0.91252 0.98290 1.04066 1.21785 1.01771 0.96389 1.01494 1.86074 1.35591 1.62679 1.37752 1.19124 0.85924 0.90694 0.93643 1.20452 0.97401 1.01887 0.98077 1.21195 0.93629 0.96238 0.96815 1.19945 0.96567 1.04382 0.96281 1.18472 0.87385 0.84313 0.83890 1.90531 1.61431 1.67694 1.33474 1.41880 1.21899 1.45008 1.10232 1.19793 1.00369 1.29216 0.97458 0.89910 1.26186 1.02871 0.98258 0.93806 1.69653 1.40507 1.44261 1.00795 0.84837 0.76689 0.78161 0.78104 1.19329 1.19126 1.19588 1.20994 0.94908 0.93120 0.96907 1.21362 0.96743 1.05337 0.98889 0.91690 0.92201 0.94393 0.90920 0.87997 0.89904 0.87676 0.90723 0.91190 0.93869 0.92747 0.83009 0.85192 0.76707 0.90811 0.85751 0.82247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 8.44 71.98 0.61 -2.39 16 2 C -0.14 -1.94 5.64 30.59 0.17 -1.76 16 3 C 0.07 1.07 2.16 30.59 0.07 1.14 16 4 C -0.12 -1.42 5.64 30.59 0.17 -1.25 16 5 C -0.16 -2.25 9.81 71.98 0.71 -1.54 16 6 O -0.31 -7.07 9.20 -90.29 -0.83 -7.90 16 7 C 0.15 4.18 5.32 22.64 0.12 4.30 16 8 C -0.16 -4.73 9.97 22.33 0.22 -4.51 16 9 C -0.06 -2.13 9.53 22.52 0.21 -1.92 16 10 C -0.17 -7.09 5.88 -20.08 -0.12 -7.20 16 11 C 0.47 24.99 7.71 86.69 0.67 25.66 16 12 O -0.64 -38.50 15.91 -4.10 -0.07 -38.56 16 13 N -0.56 -30.54 5.23 -309.91 -1.62 -32.16 16 14 C -0.34 -19.94 9.68 84.09 0.81 -19.12 16 15 H 0.08 5.15 7.15 -2.91 -0.02 5.13 16 16 C -0.01 -0.56 5.50 84.95 0.47 -0.09 16 17 N -0.91 -49.60 13.05 21.68 0.28 -49.32 16 18 Si 1.00 43.09 29.55 68.60 2.03 45.11 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 C -0.04 -1.43 9.59 22.52 0.22 -1.22 16 23 C -0.21 -5.69 7.11 22.33 0.16 -5.53 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.06 6.79 -2.39 -0.02 1.05 16 26 H 0.04 0.89 6.25 -2.38 -0.01 0.87 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.08 1.32 5.36 -2.39 -0.01 1.31 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.04 0.79 7.82 -2.39 -0.02 0.77 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 36 H 0.13 4.66 6.40 -2.91 -0.02 4.64 16 37 H 0.40 20.59 5.92 -92.71 -0.55 20.04 16 38 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 39 H 0.12 4.63 7.64 -2.91 -0.02 4.61 16 40 H 0.16 3.41 4.53 -2.91 -0.01 3.39 16 Total: -1.00 -69.43 327.45 4.79 -64.65 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.51 Total: 33.63 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 4.49 Total: -15.44 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -1.34 Total: -81.48 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -0.90 Total: -46.46 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -69.43 4.79 -64.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449822336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.457 kcal (2) G-P(sol) polarization free energy of solvation -69.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds