Wall clock time and date at job start Mon Mar 30 2020 01:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47311 * 2 1 4 4 C 1.52992 * 109.47244 * 120.00518 * 2 1 3 5 5 H 1.09005 * 109.47166 * 300.00116 * 4 2 1 6 6 C 1.52998 * 109.47390 * 59.99530 * 4 2 1 7 7 O 1.42906 * 109.47410 * 185.00194 * 6 4 2 8 8 C 1.50698 * 109.47332 * 180.02562 * 4 2 1 9 9 O 1.21283 * 120.00136 * 359.97438 * 8 4 2 10 10 N 1.34776 * 119.99890 * 179.97438 * 8 4 2 11 11 C 1.39939 * 119.99781 * 185.07076 * 10 8 4 12 12 C 1.39295 * 119.94668 * 33.31645 * 11 10 8 13 13 C 1.38488 * 120.42565 * 180.25253 * 12 11 10 14 14 C 1.37677 * 120.32469 * 359.45030 * 13 12 11 15 15 C 1.40749 * 119.88655 * 0.27351 * 14 13 12 16 16 C 1.41402 * 120.21277 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99866 * 29.26440 * 16 15 14 18 18 C 1.39925 * 120.00446 * 209.26072 * 16 15 14 19 19 N 1.30833 * 120.00067 * 15.58324 * 18 16 15 20 20 Si 1.86800 * 120.00563 * 195.58678 * 18 16 15 21 21 H 1.48502 * 109.47224 * 59.99655 * 20 18 16 22 22 H 1.48502 * 109.47287 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46890 * 299.99761 * 20 18 16 24 24 C 1.38243 * 119.94799 * 213.02254 * 11 10 8 25 25 H 1.08998 * 109.47215 * 300.00025 * 1 2 3 26 26 H 1.08999 * 109.47235 * 59.99878 * 1 2 3 27 27 H 1.09006 * 109.47292 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46805 * 240.00287 * 2 1 3 29 29 H 1.08994 * 109.47386 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47071 * 300.00222 * 3 2 1 31 31 H 1.09003 * 109.46538 * 59.99726 * 3 2 1 32 32 H 1.08997 * 109.47712 * 305.00269 * 6 4 2 33 33 H 1.09000 * 109.46668 * 65.00477 * 6 4 2 34 34 H 0.96693 * 114.00206 * 180.02562 * 7 6 4 35 35 H 0.97002 * 120.00587 * 5.07635 * 10 8 4 36 36 H 1.07996 * 119.78258 * 359.97438 * 12 11 10 37 37 H 1.08002 * 119.83574 * 179.72125 * 13 12 11 38 38 H 1.08000 * 120.06196 * 180.24689 * 14 13 12 39 39 H 0.96999 * 120.00770 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.16183 * 0.04514 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6766 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 8 1.9080 -2.8028 2.4702 8 6 3.5470 -0.7208 1.2494 9 8 4.1534 -0.1956 0.3399 10 7 4.2208 -1.3039 2.2605 11 6 5.6160 -1.2118 2.3164 12 6 6.2566 -0.0665 1.8492 13 6 7.6371 0.0330 1.8949 14 6 8.3914 -0.9953 2.4136 15 6 7.7577 -2.1563 2.8948 16 6 8.5257 -3.2169 3.4285 17 1 9.4732 -3.0113 3.9045 18 6 8.0583 -4.5328 3.3399 19 7 7.0863 -4.8277 2.5154 20 14 8.8221 -5.8687 4.3990 21 1 8.6500 -5.5226 5.8328 22 1 8.1535 -7.1649 4.1194 23 1 10.2697 -5.9805 4.0870 24 6 6.3561 -2.2551 2.8409 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9562 0.8900 32 1 0.4437 -2.1652 1.1596 33 1 1.9646 -2.7028 0.4073 34 1 1.6174 -3.7224 2.5392 35 1 3.7387 -1.7876 2.9495 36 1 5.6731 0.7471 1.4445 37 1 8.1241 0.9236 1.5259 38 1 9.4675 -0.9115 2.4509 39 1 6.7619 -5.7398 2.4542 40 1 5.8602 -3.1418 3.2071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456726647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:58 Heat of formation + Delta-G solvation = -81.843489 kcal Electronic energy + Delta-G solvation = -21775.976824 eV Core-core repulsion = 18554.809483 eV Total energy + Delta-G solvation = -3221.167342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.06621 -37.68206 -36.70768 -35.45455 -34.00791 -33.14891 -30.02434 -29.44599 -27.97806 -27.20979 -25.16587 -23.80727 -21.72501 -21.10219 -19.92213 -19.30028 -17.52048 -17.20387 -17.06389 -15.59247 -15.28375 -14.89466 -14.69564 -14.63965 -14.26867 -13.84880 -13.51044 -13.00600 -12.78815 -12.65794 -12.38231 -12.17135 -12.03874 -11.65951 -11.63313 -11.23613 -11.07916 -11.00355 -10.79354 -10.69124 -10.60729 -10.41003 -10.12488 -9.89419 -9.77753 -9.26856 -8.97930 -8.76275 -7.28453 -6.84781 -6.63927 -4.31579 2.65389 2.92013 3.09373 3.12994 3.25118 3.42027 3.80716 3.98874 4.07402 4.70775 4.78088 4.88810 4.98422 5.14574 5.25601 5.30925 5.55411 5.60831 5.68491 5.73884 5.75892 5.87730 5.95092 6.10672 6.32466 6.35877 6.57735 6.71019 6.81365 7.05229 7.13033 7.15405 7.31565 7.52399 7.71356 7.81293 7.99192 8.08504 8.26092 8.45016 8.66885 8.91149 8.95493 9.05210 10.29128 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.004896 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.030065 B = 5717.986958 C = 6739.508279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.072 4.072 3 C -0.158 4.158 4 C -0.104 4.104 5 H 0.100 0.900 6 C 0.082 3.918 7 O -0.573 6.573 8 C 0.512 3.488 9 O -0.527 6.527 10 N -0.654 5.654 11 C 0.146 3.854 12 C -0.226 4.226 13 C -0.088 4.088 14 C -0.227 4.227 15 C 0.123 3.877 16 C -0.470 4.470 17 H 0.077 0.923 18 C 0.077 3.923 19 N -0.801 5.801 20 Si 0.906 3.094 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.266 1.266 24 C -0.178 4.178 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.385 0.615 35 H 0.409 0.591 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.278 0.722 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.788 2.920 -1.117 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.091 4.091 3 C -0.215 4.215 4 C -0.126 4.126 5 H 0.119 0.881 6 C 0.004 3.996 7 O -0.379 6.379 8 C 0.299 3.701 9 O -0.404 6.404 10 N -0.299 5.299 11 C 0.053 3.947 12 C -0.247 4.247 13 C -0.107 4.107 14 C -0.247 4.247 15 C 0.120 3.880 16 C -0.501 4.501 17 H 0.095 0.905 18 C -0.139 4.139 19 N -0.427 5.427 20 Si 0.731 3.269 21 H -0.189 1.189 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.199 4.199 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.234 0.766 35 H 0.247 0.753 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.281 3.678 -1.733 13.889 hybrid contribution -0.225 -1.593 0.577 1.709 sum -13.505 2.085 -1.156 13.714 Atomic orbital electron populations 1.21966 0.95165 1.01622 1.02035 1.20806 0.94768 0.97136 0.96377 1.22060 1.04565 0.94234 1.00690 1.21462 0.93376 0.96356 1.01394 0.88148 1.22196 0.98408 0.92019 0.87003 1.86327 1.81783 1.30730 1.39078 1.20331 0.89143 0.78694 0.81959 1.90621 1.69867 1.44591 1.35315 1.43624 1.06323 1.53258 1.26699 1.17679 0.80789 0.94893 1.01307 1.20335 0.94184 0.97883 1.12269 1.20425 0.93368 0.97406 0.99517 1.21056 0.97655 0.97265 1.08701 1.17351 0.91086 0.91421 0.88135 1.19455 1.05622 0.90663 1.34334 0.90486 1.25841 0.94303 0.99938 0.93843 1.69831 1.23345 1.21063 1.28423 0.86409 0.80044 0.79237 0.81202 1.18937 1.20508 1.19118 1.20983 0.93953 0.96772 1.08220 0.92557 0.92323 0.92597 0.90333 0.89339 0.93035 0.93522 0.92292 0.93021 0.76636 0.75329 0.88018 0.89115 0.88910 0.91119 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.85 37.16 0.33 -1.02 16 2 C -0.07 -0.87 2.15 -90.63 -0.19 -1.07 16 3 C -0.16 -2.05 8.87 37.16 0.33 -1.72 16 4 C -0.10 -1.41 2.10 -91.78 -0.19 -1.60 16 5 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 6 C 0.08 0.93 6.20 37.16 0.23 1.16 16 7 O -0.57 -6.76 11.35 -35.23 -0.40 -7.16 16 8 C 0.51 9.64 6.60 -10.99 -0.07 9.56 16 9 O -0.53 -11.50 11.32 5.55 0.06 -11.44 16 10 N -0.65 -13.34 5.15 -9.91 -0.05 -13.39 16 11 C 0.15 3.57 6.27 -83.76 -0.53 3.04 16 12 C -0.23 -5.55 8.67 -39.10 -0.34 -5.89 16 13 C -0.09 -2.13 10.01 -39.69 -0.40 -2.53 16 14 C -0.23 -5.81 9.79 -38.84 -0.38 -6.19 16 15 C 0.12 3.36 5.52 -106.85 -0.59 2.77 16 16 C -0.47 -12.70 9.04 -37.75 -0.34 -13.04 16 17 H 0.08 1.99 7.89 -52.48 -0.41 1.58 16 18 C 0.08 1.97 5.15 -17.35 -0.09 1.88 16 19 N -0.80 -21.07 11.15 55.55 0.62 -20.45 16 20 Si 0.91 18.89 29.59 -169.99 -5.03 13.86 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 24 C -0.18 -4.70 8.57 -38.68 -0.33 -5.03 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.44 6.32 -51.93 -0.33 0.11 16 28 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 29 H 0.09 1.44 5.51 -51.93 -0.29 1.16 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.51 6.17 -51.93 -0.32 0.19 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.39 2.93 9.12 45.56 0.42 3.34 16 35 H 0.41 7.56 6.69 -40.82 -0.27 7.29 16 36 H 0.10 2.45 6.39 -52.49 -0.34 2.11 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.28 6.68 8.30 -40.82 -0.34 6.35 16 40 H 0.12 3.15 6.44 -52.49 -0.34 2.81 16 LS Contribution 323.57 15.07 4.88 4.88 Total: -1.00 -31.19 323.57 -7.30 -38.50 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -4.82 Total: 14.88 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -2.56 Total: -19.67 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.57 Total: -33.84 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.34 Total: -18.60 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.19 -7.30 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456726647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.346 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds