Wall clock time and date at job start Mon Mar 30 2020 01:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47311 * 2 1 4 4 C 1.52992 * 109.47244 * 120.00518 * 2 1 3 5 5 H 1.09005 * 109.47166 * 300.00116 * 4 2 1 6 6 C 1.52998 * 109.47390 * 59.99530 * 4 2 1 7 7 O 1.42906 * 109.47410 * 185.00194 * 6 4 2 8 8 C 1.50698 * 109.47332 * 180.02562 * 4 2 1 9 9 O 1.21283 * 120.00136 * 359.97438 * 8 4 2 10 10 N 1.34776 * 119.99890 * 179.97438 * 8 4 2 11 11 C 1.39939 * 119.99781 * 185.07076 * 10 8 4 12 12 C 1.39295 * 119.94668 * 33.31645 * 11 10 8 13 13 C 1.38488 * 120.42565 * 180.25253 * 12 11 10 14 14 C 1.37677 * 120.32469 * 359.45030 * 13 12 11 15 15 C 1.40749 * 119.88655 * 0.27351 * 14 13 12 16 16 C 1.41402 * 120.21277 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99866 * 29.26440 * 16 15 14 18 18 C 1.39925 * 120.00446 * 209.26072 * 16 15 14 19 19 N 1.30833 * 120.00067 * 15.58324 * 18 16 15 20 20 Si 1.86800 * 120.00563 * 195.58678 * 18 16 15 21 21 H 1.48502 * 109.47224 * 59.99655 * 20 18 16 22 22 H 1.48502 * 109.47287 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46890 * 299.99761 * 20 18 16 24 24 C 1.38243 * 119.94799 * 213.02254 * 11 10 8 25 25 H 1.08998 * 109.47215 * 300.00025 * 1 2 3 26 26 H 1.08999 * 109.47235 * 59.99878 * 1 2 3 27 27 H 1.09006 * 109.47292 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46805 * 240.00287 * 2 1 3 29 29 H 1.08994 * 109.47386 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47071 * 300.00222 * 3 2 1 31 31 H 1.09003 * 109.46538 * 59.99726 * 3 2 1 32 32 H 1.08997 * 109.47712 * 305.00269 * 6 4 2 33 33 H 1.09000 * 109.46668 * 65.00477 * 6 4 2 34 34 H 0.96693 * 114.00206 * 180.02562 * 7 6 4 35 35 H 0.97002 * 120.00587 * 5.07635 * 10 8 4 36 36 H 1.07996 * 119.78258 * 359.97438 * 12 11 10 37 37 H 1.08002 * 119.83574 * 179.72125 * 13 12 11 38 38 H 1.08000 * 120.06196 * 180.24689 * 14 13 12 39 39 H 0.96999 * 120.00770 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.16183 * 0.04514 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6766 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 8 1.9080 -2.8028 2.4702 8 6 3.5470 -0.7208 1.2494 9 8 4.1534 -0.1956 0.3399 10 7 4.2208 -1.3039 2.2605 11 6 5.6160 -1.2118 2.3164 12 6 6.2566 -0.0665 1.8492 13 6 7.6371 0.0330 1.8949 14 6 8.3914 -0.9953 2.4136 15 6 7.7577 -2.1563 2.8948 16 6 8.5257 -3.2169 3.4285 17 1 9.4732 -3.0113 3.9045 18 6 8.0583 -4.5328 3.3399 19 7 7.0863 -4.8277 2.5154 20 14 8.8221 -5.8687 4.3990 21 1 8.6500 -5.5226 5.8328 22 1 8.1535 -7.1649 4.1194 23 1 10.2697 -5.9805 4.0870 24 6 6.3561 -2.2551 2.8409 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9562 0.8900 32 1 0.4437 -2.1652 1.1596 33 1 1.9646 -2.7028 0.4073 34 1 1.6174 -3.7224 2.5392 35 1 3.7387 -1.7876 2.9495 36 1 5.6731 0.7471 1.4445 37 1 8.1241 0.9236 1.5259 38 1 9.4675 -0.9115 2.4509 39 1 6.7619 -5.7398 2.4542 40 1 5.8602 -3.1418 3.2071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456726647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:58 Heat of formation + Delta-G solvation = -102.631591 kcal Electronic energy + Delta-G solvation = -21776.878264 eV Core-core repulsion = 18554.809483 eV Total energy + Delta-G solvation = -3222.068781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54297 -39.34483 -37.95268 -36.60615 -35.70633 -34.99285 -31.55148 -31.17819 -29.57877 -28.10256 -27.15604 -24.92865 -23.25016 -22.97015 -21.42951 -20.68125 -19.19620 -18.55878 -18.25848 -17.38450 -16.72205 -16.61009 -16.34186 -15.86626 -15.54647 -15.15216 -14.75098 -14.65464 -14.49928 -14.17671 -13.65717 -13.52762 -13.23935 -13.01001 -12.93464 -12.77891 -12.59967 -12.55178 -12.22752 -12.11581 -11.86338 -11.71460 -11.63700 -11.56603 -11.14176 -11.02279 -10.72448 -10.38189 -9.29944 -8.75284 -8.55931 -6.36420 0.82794 1.04163 1.40051 1.50519 1.53417 1.80463 2.23457 2.33114 2.78536 3.14186 3.66339 3.75217 3.82711 4.05672 4.23317 4.29224 4.43876 4.46066 4.57783 4.71130 4.73398 4.79076 4.84983 4.86105 5.04182 5.08974 5.13455 5.17270 5.24379 5.27820 5.36748 5.46052 5.56373 5.84857 5.88503 6.02320 6.07948 6.35262 6.60274 6.78899 6.87658 6.94752 6.98976 7.39670 8.38468 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.004896 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.030065 B = 5717.986958 C = 6739.508279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C -0.158 4.158 4 C -0.096 4.096 5 H 0.116 0.884 6 C 0.085 3.915 7 O -0.591 6.591 8 C 0.505 3.495 9 O -0.560 6.560 10 N -0.654 5.654 11 C 0.148 3.852 12 C -0.239 4.239 13 C -0.086 4.086 14 C -0.247 4.247 15 C 0.095 3.905 16 C -0.505 4.505 17 H 0.078 0.922 18 C 0.037 3.963 19 N -0.830 5.830 20 Si 0.984 3.016 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.261 1.261 24 C -0.199 4.199 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.039 0.961 34 H 0.403 0.597 35 H 0.417 0.583 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.287 0.713 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.603 2.317 -0.715 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.215 4.215 4 C -0.117 4.117 5 H 0.134 0.866 6 C 0.007 3.993 7 O -0.401 6.401 8 C 0.294 3.706 9 O -0.439 6.439 10 N -0.300 5.300 11 C 0.054 3.946 12 C -0.260 4.260 13 C -0.105 4.105 14 C -0.267 4.267 15 C 0.092 3.908 16 C -0.535 4.535 17 H 0.096 0.904 18 C -0.177 4.177 19 N -0.456 5.456 20 Si 0.804 3.196 21 H -0.183 1.183 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.221 4.221 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.057 0.943 34 H 0.255 0.745 35 H 0.257 0.743 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.132 3.074 -1.334 15.499 hybrid contribution 0.312 -1.342 0.383 1.430 sum -14.820 1.732 -0.951 14.951 Atomic orbital electron populations 1.21915 0.91916 1.03053 1.03121 1.20821 0.97277 0.95945 0.94866 1.22015 1.02020 0.95450 1.02014 1.21548 0.88745 0.98566 1.02832 0.86564 1.22220 1.00452 0.90164 0.86434 1.86270 1.82352 1.32339 1.39138 1.21421 0.91502 0.77034 0.80636 1.90611 1.71270 1.45590 1.36392 1.43715 1.04804 1.53857 1.27673 1.17809 0.82882 0.94132 0.99730 1.20517 0.94638 0.98114 1.12705 1.20750 0.93345 0.98000 0.98363 1.21242 0.98351 0.97486 1.09578 1.17763 0.91889 0.92407 0.88692 1.19752 1.06215 0.91832 1.35651 0.90389 1.26731 0.94589 1.01874 0.94525 1.69893 1.24319 1.22182 1.29239 0.85239 0.79143 0.76101 0.79086 1.18319 1.19205 1.18584 1.20916 0.93999 0.97129 1.10048 0.91438 0.91333 0.90988 0.91989 0.93186 0.91606 0.92340 0.88287 0.94293 0.74536 0.74338 0.87740 0.86187 0.87961 0.90285 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.85 71.98 0.64 -1.40 16 2 C -0.07 -1.58 2.15 -10.80 -0.02 -1.60 16 3 C -0.16 -3.94 8.87 71.98 0.64 -3.30 16 4 C -0.10 -2.43 2.10 -11.54 -0.02 -2.45 16 5 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 6 C 0.08 1.74 6.20 71.98 0.45 2.19 16 7 O -0.59 -12.91 11.35 -148.98 -1.69 -14.61 16 8 C 0.50 19.08 6.60 87.66 0.58 19.66 16 9 O -0.56 -25.02 11.32 -3.04 -0.03 -25.05 16 10 N -0.65 -27.05 5.15 -303.65 -1.57 -28.61 16 11 C 0.15 7.44 6.27 38.10 0.24 7.68 16 12 C -0.24 -11.97 8.67 22.58 0.20 -11.77 16 13 C -0.09 -4.19 10.01 22.20 0.22 -3.97 16 14 C -0.25 -12.93 9.79 22.75 0.22 -12.71 16 15 C 0.10 5.38 5.52 -21.31 -0.12 5.26 16 16 C -0.50 -27.90 9.04 23.46 0.21 -27.69 16 17 H 0.08 4.13 7.89 -2.91 -0.02 4.11 16 18 C 0.04 1.90 5.15 85.25 0.44 2.34 16 19 N -0.83 -44.27 11.15 21.82 0.24 -44.03 16 20 Si 0.98 38.52 29.59 68.60 2.03 40.55 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 24 C -0.20 -10.89 8.57 22.85 0.20 -10.69 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.81 6.32 -2.38 -0.02 0.79 16 28 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 29 H 0.05 1.66 5.51 -2.39 -0.01 1.64 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.10 1.28 6.17 -2.39 -0.01 1.27 16 33 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.40 5.35 9.12 -74.06 -0.68 4.68 16 35 H 0.42 15.52 6.69 -92.71 -0.62 14.90 16 36 H 0.10 5.13 6.39 -2.91 -0.02 5.11 16 37 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 38 H 0.10 5.00 8.06 -2.91 -0.02 4.98 16 39 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 40 H 0.11 5.91 6.44 -2.91 -0.02 5.89 16 Total: -1.00 -69.57 323.57 2.61 -66.95 By element: Atomic # 1 Polarization: 43.48 SS G_CDS: -0.23 Total: 43.25 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 3.86 Total: -38.45 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.32 Total: -72.64 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -1.73 Total: -39.66 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -69.57 2.61 -66.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456726647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.677 kcal (2) G-P(sol) polarization free energy of solvation -69.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds