Wall clock time and date at job start Mon Mar 30 2020 01:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47213 * 2 1 4 4 C 1.53004 * 109.47062 * 119.99450 * 2 1 3 5 5 H 1.09004 * 109.46862 * 304.65494 * 4 2 1 6 6 C 1.52992 * 109.47098 * 184.65349 * 4 2 1 7 7 O 1.42903 * 109.47429 * 67.43431 * 6 4 2 8 8 C 1.50697 * 109.46853 * 64.65341 * 4 2 1 9 9 O 1.21292 * 120.00191 * 0.02562 * 8 4 2 10 10 N 1.34775 * 120.00125 * 179.97438 * 8 4 2 11 11 C 1.39939 * 120.00553 * 185.11844 * 10 8 4 12 12 C 1.39295 * 119.94294 * 324.08171 * 11 10 8 13 13 C 1.38488 * 120.42627 * 179.76059 * 12 11 10 14 14 C 1.37685 * 120.32120 * 0.51283 * 13 12 11 15 15 C 1.40745 * 119.88489 * 359.74415 * 14 13 12 16 16 C 1.41399 * 120.20814 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00292 * 29.13957 * 16 15 14 18 18 C 1.39938 * 120.00139 * 209.13820 * 16 15 14 19 19 N 1.30823 * 119.99774 * 10.33888 * 18 16 15 20 20 Si 1.86794 * 120.00185 * 190.33950 * 18 16 15 21 21 H 1.48498 * 109.47232 * 89.99826 * 20 18 16 22 22 H 1.48495 * 109.47153 * 210.00152 * 20 18 16 23 23 H 1.48505 * 109.47422 * 329.99894 * 20 18 16 24 24 C 1.38236 * 119.94855 * 144.35105 * 11 10 8 25 25 H 1.09000 * 109.46675 * 59.99997 * 1 2 3 26 26 H 1.08998 * 109.47225 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47263 * 300.00640 * 1 2 3 28 28 H 1.08999 * 109.47472 * 239.99869 * 2 1 3 29 29 H 1.09003 * 109.46950 * 189.89349 * 3 2 1 30 30 H 1.09007 * 109.46356 * 309.88745 * 3 2 1 31 31 H 1.08995 * 109.47381 * 69.88785 * 3 2 1 32 32 H 1.09003 * 109.47321 * 187.43277 * 6 4 2 33 33 H 1.08997 * 109.47560 * 307.43360 * 6 4 2 34 34 H 0.96697 * 114.00667 * 179.97438 * 7 6 4 35 35 H 0.97001 * 119.99722 * 5.11887 * 10 8 4 36 36 H 1.07997 * 119.78432 * 0.02562 * 12 11 10 37 37 H 1.08003 * 119.83786 * 180.23232 * 13 12 11 38 38 H 1.07998 * 120.05804 * 179.76560 * 14 13 12 39 39 H 0.96995 * 120.00135 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.16476 * 359.96324 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6101 -0.2576 2.1373 6 6 3.5654 -0.6206 1.3092 7 8 3.9448 0.7383 1.5363 8 6 1.6340 -2.1713 1.1931 9 8 0.9995 -2.5872 0.2467 10 7 1.9766 -3.0063 2.1940 11 6 1.6939 -4.3731 2.0928 12 6 0.5227 -4.7965 1.4688 13 6 0.2354 -6.1468 1.3587 14 6 1.1001 -7.0858 1.8747 15 6 2.2847 -6.6727 2.5126 16 6 3.1779 -7.6312 3.0445 17 1 3.2439 -8.6132 2.5997 18 6 3.9764 -7.3075 4.1472 19 7 3.7579 -6.2014 4.8107 20 14 5.3540 -8.4547 4.6717 21 1 6.6065 -8.0782 3.9683 22 1 5.5579 -8.3452 6.1385 23 1 4.9929 -9.8529 4.3252 24 6 2.5747 -5.3007 2.6171 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1157 1.4476 -0.1766 30 1 1.5397 2.0047 -0.7886 31 1 1.8280 1.9029 0.9649 32 1 3.9390 -1.2428 2.1226 33 1 3.9895 -0.9633 0.3654 34 1 4.9004 0.8769 1.5863 35 1 2.4193 -2.6599 2.9845 36 1 -0.1636 -4.0673 1.0645 37 1 -0.6736 -6.4646 0.8697 38 1 0.8700 -8.1376 1.7898 39 1 4.3111 -5.9771 5.5752 40 1 3.4811 -4.9733 3.1044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456726660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:01 Heat of formation + Delta-G solvation = -80.623023 kcal Electronic energy + Delta-G solvation = -21596.431183 eV Core-core repulsion = 18375.316765 eV Total energy + Delta-G solvation = -3221.114418 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.16664 -37.87395 -36.90710 -35.00492 -34.16598 -33.30537 -30.31553 -29.49721 -27.98301 -26.95276 -25.24871 -23.83397 -21.76300 -21.17345 -19.94824 -19.41251 -17.88010 -17.42077 -16.42544 -15.80876 -15.57983 -15.07775 -14.84657 -14.65914 -14.25481 -13.62411 -13.19790 -13.14842 -12.85628 -12.76892 -12.39903 -12.11748 -11.92152 -11.86288 -11.63729 -11.21427 -11.16294 -10.98210 -10.77091 -10.67852 -10.56448 -10.51038 -10.02161 -9.86185 -9.74858 -9.36440 -9.17158 -8.91066 -7.35169 -7.04057 -6.67196 -4.40559 2.54181 2.83351 3.06074 3.09728 3.14436 3.25180 3.62590 3.93281 4.22937 4.63443 4.66765 4.88692 5.03195 5.30014 5.34339 5.38362 5.56861 5.65279 5.74906 5.80792 5.86116 6.02359 6.17085 6.26746 6.30845 6.49512 6.57745 6.64755 6.69732 6.88419 7.04486 7.05474 7.25109 7.45759 7.59864 7.67630 7.91651 8.02168 8.13595 8.30965 8.54640 8.73930 8.88184 8.93946 10.22486 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022168 B = 0.004578 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.788986 B = 6115.272555 C = 7179.125759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.072 4.072 3 C -0.137 4.137 4 C -0.103 4.103 5 H 0.102 0.898 6 C 0.085 3.915 7 O -0.563 6.563 8 C 0.512 3.488 9 O -0.516 6.516 10 N -0.664 5.664 11 C 0.138 3.862 12 C -0.221 4.221 13 C -0.091 4.091 14 C -0.222 4.222 15 C 0.118 3.882 16 C -0.465 4.465 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.809 5.809 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.174 4.174 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.376 0.624 35 H 0.402 0.598 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.277 0.723 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 12.005 -3.001 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.091 4.091 3 C -0.194 4.194 4 C -0.125 4.125 5 H 0.120 0.880 6 C 0.007 3.993 7 O -0.368 6.368 8 C 0.298 3.702 9 O -0.392 6.392 10 N -0.308 5.308 11 C 0.047 3.953 12 C -0.242 4.242 13 C -0.110 4.110 14 C -0.242 4.242 15 C 0.115 3.885 16 C -0.496 4.496 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.436 5.436 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.196 4.196 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.223 0.777 35 H 0.236 0.764 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.680 11.941 -3.488 12.459 hybrid contribution 1.464 -0.470 0.906 1.785 sum 2.145 11.471 -2.582 11.952 Atomic orbital electron populations 1.21982 0.94918 1.03462 1.00755 1.20865 0.96241 0.95832 0.96121 1.21881 1.01654 0.94828 1.01045 1.21453 0.95771 0.93222 1.02023 0.88044 1.22026 0.93588 0.83412 1.00270 1.86604 1.28135 1.26469 1.95627 1.20354 0.80129 0.87219 0.82506 1.90660 1.38226 1.76812 1.33506 1.43551 1.59545 1.07333 1.20326 1.17665 0.95190 0.80799 1.01689 1.20481 0.98207 0.95375 1.10106 1.20463 0.98098 0.92960 0.99495 1.21113 0.96633 0.97378 1.09071 1.17376 0.90410 0.91798 0.88895 1.19531 1.18470 0.99738 1.11825 0.90473 1.25841 0.97116 0.95566 0.95579 1.69776 1.35075 1.22990 1.15754 0.86279 0.81059 0.81196 0.77945 1.19469 1.20378 1.18697 1.21135 0.99405 0.92440 1.06575 0.93078 0.90561 0.93529 0.90781 0.91333 0.93814 0.92732 0.92921 0.92907 0.77694 0.76384 0.87496 0.89007 0.88830 0.91170 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.91 37.16 0.33 -1.71 16 2 C -0.07 -0.93 2.15 -90.61 -0.19 -1.13 16 3 C -0.14 -1.52 7.78 37.16 0.29 -1.23 16 4 C -0.10 -1.37 2.12 -91.77 -0.19 -1.57 16 5 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 6 C 0.09 0.97 6.17 37.15 0.23 1.19 16 7 O -0.56 -5.43 10.21 -35.23 -0.36 -5.79 16 8 C 0.51 8.93 6.71 -10.99 -0.07 8.86 16 9 O -0.52 -10.66 11.41 5.55 0.06 -10.59 16 10 N -0.66 -12.31 5.11 -9.91 -0.05 -12.37 16 11 C 0.14 3.20 6.27 -83.76 -0.53 2.67 16 12 C -0.22 -5.23 8.70 -39.10 -0.34 -5.57 16 13 C -0.09 -2.13 10.02 -39.69 -0.40 -2.53 16 14 C -0.22 -5.51 9.79 -38.84 -0.38 -5.89 16 15 C 0.12 3.12 5.55 -106.85 -0.59 2.53 16 16 C -0.46 -12.20 9.06 -37.74 -0.34 -12.54 16 17 H 0.08 1.96 7.87 -52.48 -0.41 1.54 16 18 C 0.07 1.83 5.26 -17.34 -0.09 1.74 16 19 N -0.81 -20.24 10.85 55.55 0.60 -19.64 16 20 Si 0.91 18.46 29.57 -169.99 -5.03 13.43 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 24 C -0.17 -4.38 8.57 -38.69 -0.33 -4.71 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.21 5.92 -51.93 -0.31 0.90 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.06 7.97 -51.93 -0.41 0.65 16 29 H 0.07 0.74 6.19 -51.93 -0.32 0.42 16 30 H 0.04 0.45 8.12 -51.92 -0.42 0.03 16 31 H 0.05 0.62 7.94 -51.93 -0.41 0.20 16 32 H 0.05 0.58 7.48 -51.93 -0.39 0.19 16 33 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.38 2.08 9.12 45.56 0.42 2.49 16 35 H 0.40 6.39 8.34 -40.82 -0.34 6.05 16 36 H 0.11 2.50 6.25 -52.49 -0.33 2.17 16 37 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 38 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 40 H 0.12 3.14 6.23 -52.49 -0.33 2.81 16 LS Contribution 323.94 15.07 4.88 4.88 Total: -1.00 -29.52 323.94 -7.43 -36.96 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -4.93 Total: 13.01 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -2.61 Total: -19.89 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.55 Total: -32.01 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.30 Total: -16.38 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.52 -7.43 -36.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456726660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.667 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds