Wall clock time and date at job start Mon Mar 30 2020 01:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47213 * 2 1 4 4 C 1.53004 * 109.47062 * 119.99450 * 2 1 3 5 5 H 1.09004 * 109.46862 * 304.65494 * 4 2 1 6 6 C 1.52992 * 109.47098 * 184.65349 * 4 2 1 7 7 O 1.42903 * 109.47429 * 67.43431 * 6 4 2 8 8 C 1.50697 * 109.46853 * 64.65341 * 4 2 1 9 9 O 1.21292 * 120.00191 * 0.02562 * 8 4 2 10 10 N 1.34775 * 120.00125 * 179.97438 * 8 4 2 11 11 C 1.39939 * 120.00553 * 185.11844 * 10 8 4 12 12 C 1.39295 * 119.94294 * 324.08171 * 11 10 8 13 13 C 1.38488 * 120.42627 * 179.76059 * 12 11 10 14 14 C 1.37685 * 120.32120 * 0.51283 * 13 12 11 15 15 C 1.40745 * 119.88489 * 359.74415 * 14 13 12 16 16 C 1.41399 * 120.20814 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00292 * 29.13957 * 16 15 14 18 18 C 1.39938 * 120.00139 * 209.13820 * 16 15 14 19 19 N 1.30823 * 119.99774 * 10.33888 * 18 16 15 20 20 Si 1.86794 * 120.00185 * 190.33950 * 18 16 15 21 21 H 1.48498 * 109.47232 * 89.99826 * 20 18 16 22 22 H 1.48495 * 109.47153 * 210.00152 * 20 18 16 23 23 H 1.48505 * 109.47422 * 329.99894 * 20 18 16 24 24 C 1.38236 * 119.94855 * 144.35105 * 11 10 8 25 25 H 1.09000 * 109.46675 * 59.99997 * 1 2 3 26 26 H 1.08998 * 109.47225 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47263 * 300.00640 * 1 2 3 28 28 H 1.08999 * 109.47472 * 239.99869 * 2 1 3 29 29 H 1.09003 * 109.46950 * 189.89349 * 3 2 1 30 30 H 1.09007 * 109.46356 * 309.88745 * 3 2 1 31 31 H 1.08995 * 109.47381 * 69.88785 * 3 2 1 32 32 H 1.09003 * 109.47321 * 187.43277 * 6 4 2 33 33 H 1.08997 * 109.47560 * 307.43360 * 6 4 2 34 34 H 0.96697 * 114.00667 * 179.97438 * 7 6 4 35 35 H 0.97001 * 119.99722 * 5.11887 * 10 8 4 36 36 H 1.07997 * 119.78432 * 0.02562 * 12 11 10 37 37 H 1.08003 * 119.83786 * 180.23232 * 13 12 11 38 38 H 1.07998 * 120.05804 * 179.76560 * 14 13 12 39 39 H 0.96995 * 120.00135 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.16476 * 359.96324 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6101 -0.2576 2.1373 6 6 3.5654 -0.6206 1.3092 7 8 3.9448 0.7383 1.5363 8 6 1.6340 -2.1713 1.1931 9 8 0.9995 -2.5872 0.2467 10 7 1.9766 -3.0063 2.1940 11 6 1.6939 -4.3731 2.0928 12 6 0.5227 -4.7965 1.4688 13 6 0.2354 -6.1468 1.3587 14 6 1.1001 -7.0858 1.8747 15 6 2.2847 -6.6727 2.5126 16 6 3.1779 -7.6312 3.0445 17 1 3.2439 -8.6132 2.5997 18 6 3.9764 -7.3075 4.1472 19 7 3.7579 -6.2014 4.8107 20 14 5.3540 -8.4547 4.6717 21 1 6.6065 -8.0782 3.9683 22 1 5.5579 -8.3452 6.1385 23 1 4.9929 -9.8529 4.3252 24 6 2.5747 -5.3007 2.6171 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1157 1.4476 -0.1766 30 1 1.5397 2.0047 -0.7886 31 1 1.8280 1.9029 0.9649 32 1 3.9390 -1.2428 2.1226 33 1 3.9895 -0.9633 0.3654 34 1 4.9004 0.8769 1.5863 35 1 2.4193 -2.6599 2.9845 36 1 -0.1636 -4.0673 1.0645 37 1 -0.6736 -6.4646 0.8697 38 1 0.8700 -8.1376 1.7898 39 1 4.3111 -5.9771 5.5752 40 1 3.4811 -4.9733 3.1044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456726660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:01 Heat of formation + Delta-G solvation = -99.300509 kcal Electronic energy + Delta-G solvation = -21597.241100 eV Core-core repulsion = 18375.316765 eV Total energy + Delta-G solvation = -3221.924335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.59566 -39.39173 -38.16645 -36.25428 -35.61040 -35.09658 -31.67845 -31.30404 -29.55924 -27.93096 -27.16002 -24.93168 -23.25439 -22.98937 -21.47253 -20.68634 -19.23739 -18.97786 -17.67215 -17.42742 -16.75141 -16.61167 -16.47226 -16.03936 -15.70109 -15.01548 -14.79479 -14.56354 -14.23902 -14.08835 -13.80459 -13.49001 -13.23198 -13.00492 -12.86616 -12.81886 -12.79367 -12.60922 -12.34974 -11.98833 -11.81690 -11.61370 -11.57415 -11.52685 -11.12615 -10.88934 -10.68830 -10.52961 -9.28592 -8.86342 -8.51309 -6.37380 0.81211 1.04016 1.41175 1.49844 1.53229 1.68119 2.19535 2.23811 2.77671 3.26327 3.62698 3.69394 3.78174 4.04515 4.27883 4.37068 4.43613 4.47761 4.55343 4.73968 4.78017 4.80628 4.84056 4.90576 5.07137 5.11259 5.16074 5.17972 5.24470 5.33124 5.37511 5.48725 5.63869 5.79349 5.85671 6.02993 6.09832 6.33927 6.56888 6.73040 6.89364 6.95230 6.97871 7.25869 8.39110 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022168 B = 0.004578 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.788986 B = 6115.272555 C = 7179.125759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.071 4.071 3 C -0.127 4.127 4 C -0.094 4.094 5 H 0.116 0.884 6 C 0.093 3.907 7 O -0.564 6.564 8 C 0.512 3.488 9 O -0.549 6.549 10 N -0.660 5.660 11 C 0.145 3.855 12 C -0.235 4.235 13 C -0.090 4.090 14 C -0.243 4.243 15 C 0.090 3.910 16 C -0.500 4.500 17 H 0.074 0.926 18 C 0.037 3.963 19 N -0.831 5.831 20 Si 0.983 3.017 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.262 1.262 24 C -0.193 4.193 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.397 0.603 35 H 0.414 0.586 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.287 0.713 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.733 13.320 -2.504 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.090 4.090 3 C -0.184 4.184 4 C -0.115 4.115 5 H 0.134 0.866 6 C 0.014 3.986 7 O -0.373 6.373 8 C 0.301 3.699 9 O -0.426 6.426 10 N -0.305 5.305 11 C 0.052 3.948 12 C -0.255 4.255 13 C -0.109 4.109 14 C -0.263 4.263 15 C 0.087 3.913 16 C -0.530 4.530 17 H 0.092 0.908 18 C -0.177 4.177 19 N -0.458 5.458 20 Si 0.804 3.196 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.215 4.215 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.247 0.753 35 H 0.251 0.749 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.737 13.300 -2.985 13.741 hybrid contribution 1.086 -0.797 0.723 1.529 sum 2.824 12.503 -2.262 13.016 Atomic orbital electron populations 1.21944 0.95233 1.01802 1.01940 1.20878 0.96001 0.96994 0.95154 1.21791 1.01975 0.93127 1.01518 1.21421 0.97533 0.89713 1.02873 0.86598 1.21822 0.91878 0.84522 1.00344 1.86542 1.30285 1.24964 1.95517 1.21113 0.78888 0.88595 0.81344 1.90648 1.39519 1.77796 1.34626 1.43539 1.59770 1.05780 1.21414 1.17716 0.94324 0.82712 1.00035 1.20664 0.98600 0.95678 1.10608 1.20766 0.98672 0.92727 0.98687 1.21277 0.96860 0.98134 1.09988 1.17777 0.91226 0.92713 0.89548 1.19778 1.20137 0.99909 1.13217 0.90779 1.26650 0.98889 0.97209 0.94942 1.69817 1.35771 1.24160 1.16007 0.85185 0.77679 0.78799 0.77918 1.18712 1.19232 1.18648 1.21083 0.99837 0.92574 1.07957 0.91899 0.93534 0.92386 0.92430 0.90820 0.92885 0.92495 0.92550 0.93227 0.75281 0.74862 0.87332 0.86356 0.88116 0.90226 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 8.91 71.98 0.64 -3.23 16 2 C -0.07 -1.75 2.15 -10.79 -0.02 -1.78 16 3 C -0.13 -2.49 7.78 71.98 0.56 -1.93 16 4 C -0.09 -2.36 2.12 -11.54 -0.02 -2.38 16 5 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 6 C 0.09 1.92 6.17 71.98 0.44 2.36 16 7 O -0.56 -9.18 10.21 -148.98 -1.52 -10.70 16 8 C 0.51 17.67 6.71 87.66 0.59 18.26 16 9 O -0.55 -22.83 11.41 -3.07 -0.03 -22.86 16 10 N -0.66 -24.36 5.11 -303.65 -1.55 -25.91 16 11 C 0.15 6.80 6.27 38.10 0.24 7.03 16 12 C -0.23 -11.21 8.70 22.58 0.20 -11.01 16 13 C -0.09 -4.23 10.02 22.20 0.22 -4.00 16 14 C -0.24 -12.28 9.79 22.75 0.22 -12.06 16 15 C 0.09 4.89 5.55 -21.31 -0.12 4.77 16 16 C -0.50 -26.80 9.06 23.46 0.21 -26.59 16 17 H 0.07 3.86 7.87 -2.91 -0.02 3.83 16 18 C 0.04 1.81 5.26 85.26 0.45 2.26 16 19 N -0.83 -41.63 10.85 21.82 0.24 -41.39 16 20 Si 0.98 37.42 29.57 68.60 2.03 39.45 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 24 C -0.19 -9.92 8.57 22.85 0.20 -9.72 16 25 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.47 5.92 -2.39 -0.01 1.46 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.61 7.97 -2.39 -0.02 1.59 16 29 H 0.07 1.38 6.19 -2.39 -0.01 1.37 16 30 H 0.05 0.95 8.12 -2.38 -0.02 0.93 16 31 H 0.06 1.10 7.94 -2.39 -0.02 1.09 16 32 H 0.06 1.13 7.48 -2.39 -0.02 1.11 16 33 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 34 H 0.40 3.09 9.12 -74.06 -0.68 2.42 16 35 H 0.41 12.94 8.34 -92.71 -0.77 12.17 16 36 H 0.11 5.12 6.25 -2.91 -0.02 5.10 16 37 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 38 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 39 H 0.29 12.93 8.30 -92.71 -0.77 12.16 16 40 H 0.12 6.03 6.23 -2.91 -0.02 6.01 16 Total: -1.00 -63.97 323.94 2.58 -61.39 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: -0.38 Total: 38.04 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 3.81 Total: -38.02 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -1.32 Total: -67.30 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -1.56 Total: -33.56 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -63.97 2.58 -61.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456726660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.913 kcal (2) G-P(sol) polarization free energy of solvation -63.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds