Wall clock time and date at job start Mon Mar 30 2020 01:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47019 * 2 1 4 4 C 1.53001 * 109.47288 * 174.99426 * 3 2 1 5 5 H 1.09006 * 109.46635 * 302.65225 * 4 3 2 6 6 O 1.42891 * 109.47330 * 62.65224 * 4 3 2 7 7 C 1.42895 * 114.00261 * 210.60740 * 6 4 3 8 8 C 1.50704 * 109.47143 * 182.65615 * 4 3 2 9 9 O 1.21285 * 119.99636 * 244.99888 * 8 4 3 10 10 N 1.34769 * 120.00211 * 64.99566 * 8 4 3 11 11 C 1.39933 * 119.99945 * 184.51376 * 10 8 4 12 12 C 1.39299 * 119.94891 * 324.88361 * 11 10 8 13 13 C 1.38480 * 120.42864 * 179.76348 * 12 11 10 14 14 C 1.37684 * 120.32245 * 0.51801 * 13 12 11 15 15 C 1.40743 * 119.88594 * 359.74129 * 14 13 12 16 16 C 1.41411 * 120.21185 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00185 * 205.37174 * 16 15 14 18 18 C 1.39932 * 119.99632 * 25.37166 * 16 15 14 19 19 N 1.30829 * 120.00438 * 17.21885 * 18 16 15 20 20 Si 1.86804 * 119.99889 * 197.21884 * 18 16 15 21 21 H 1.48500 * 109.46996 * 89.99921 * 20 18 16 22 22 H 1.48492 * 109.47374 * 210.00391 * 20 18 16 23 23 H 1.48504 * 109.47106 * 330.00287 * 20 18 16 24 24 C 1.38248 * 119.94876 * 145.16467 * 11 10 8 25 25 H 1.08999 * 109.47126 * 299.99705 * 1 2 3 26 26 H 1.09001 * 109.47142 * 59.99891 * 1 2 3 27 27 H 1.09001 * 109.46703 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47126 * 240.00295 * 2 1 3 29 29 H 1.08999 * 109.47529 * 119.99744 * 2 1 3 30 30 H 1.09007 * 109.46911 * 54.99413 * 3 2 1 31 31 H 1.09004 * 109.47506 * 294.99298 * 3 2 1 32 32 H 1.08995 * 109.47703 * 295.51404 * 7 6 4 33 33 H 1.09003 * 109.47281 * 175.50906 * 7 6 4 34 34 H 1.09006 * 109.46855 * 55.51610 * 7 6 4 35 35 H 0.97007 * 120.00190 * 4.51606 * 10 8 4 36 36 H 1.08000 * 119.77991 * 0.02562 * 12 11 10 37 37 H 1.08003 * 119.84068 * 180.25800 * 13 12 11 38 38 H 1.08005 * 120.06149 * 179.77027 * 14 13 12 39 39 H 0.96993 * 120.00389 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.15704 * 359.95218 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1259 5 1 3.8550 0.9158 1.0339 6 8 4.1373 0.7916 -1.0090 7 6 5.3729 0.1278 -0.7358 8 6 4.0617 2.8657 0.1915 9 8 4.7574 3.3065 -0.6988 10 7 3.7329 3.6468 1.2394 11 6 4.1144 4.9930 1.2554 12 6 5.3318 5.3775 0.6983 13 6 5.7170 6.7077 0.7043 14 6 4.9046 7.6640 1.2712 15 6 3.6741 7.2897 1.8427 16 6 2.8342 8.2663 2.4262 17 1 2.1317 7.9838 3.1963 18 6 2.9133 9.5986 2.0058 19 7 3.4953 9.8933 0.8717 20 14 2.1879 10.9565 3.0638 21 1 3.2206 11.4532 4.0083 22 1 1.7342 12.0720 2.1950 23 1 1.0323 10.4237 3.8292 24 6 3.2850 5.9386 1.8293 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6052 1.9816 0.8418 31 1 1.7518 1.9299 -0.9314 32 1 6.1266 0.8637 -0.4559 33 1 5.7017 -0.4087 -1.6258 34 1 5.2327 -0.5782 0.0829 35 1 3.2319 3.2758 1.9826 36 1 5.9776 4.6340 0.2550 37 1 6.6611 6.9958 0.2660 38 1 5.2109 8.6997 1.2768 39 1 3.5499 10.8167 0.5801 40 1 2.3426 5.6409 2.2649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456729847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:27 Heat of formation + Delta-G solvation = -94.492486 kcal Electronic energy + Delta-G solvation = -21154.762037 eV Core-core repulsion = 17933.046194 eV Total energy + Delta-G solvation = -3221.715843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.51765 -39.49415 -38.30791 -36.22013 -35.67902 -34.81181 -31.78936 -31.40306 -29.59890 -27.30199 -27.18507 -25.68868 -23.12430 -22.73551 -22.07868 -21.27203 -19.49181 -18.57256 -17.96408 -17.33015 -16.85586 -16.59521 -16.33378 -15.88631 -15.65134 -15.56689 -14.87896 -14.77271 -14.35650 -14.19339 -14.05278 -13.54743 -13.33355 -13.01228 -12.96767 -12.92208 -12.71029 -12.43897 -12.28449 -12.02061 -11.96522 -11.89063 -11.52940 -11.46771 -11.43666 -11.10176 -10.83431 -10.23478 -9.43032 -8.79966 -8.61221 -6.36408 0.84252 0.96058 1.40403 1.50085 1.54243 1.67774 2.09213 2.23001 2.74737 2.78488 3.57669 3.71938 3.83375 3.88558 4.21751 4.28672 4.41062 4.45597 4.52541 4.67253 4.68119 4.76364 4.82860 4.92117 5.00388 5.01352 5.03983 5.11192 5.20806 5.26783 5.32954 5.36736 5.50754 5.72335 5.82142 5.99779 6.07282 6.11063 6.29863 6.61025 6.69516 6.92131 6.97933 7.26197 8.34712 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.003895 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.350016 B = 7186.682452 C = 8091.113319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.112 4.112 4 C 0.087 3.913 5 H 0.124 0.876 6 O -0.378 6.378 7 C 0.023 3.977 8 C 0.476 3.524 9 O -0.559 6.559 10 N -0.653 5.653 11 C 0.159 3.841 12 C -0.242 4.242 13 C -0.101 4.101 14 C -0.194 4.194 15 C 0.095 3.905 16 C -0.496 4.496 17 H 0.083 0.917 18 C 0.034 3.966 19 N -0.828 5.828 20 Si 0.986 3.014 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.254 1.254 24 C -0.252 4.252 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.421 0.579 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.288 0.712 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 -17.195 3.058 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.150 4.150 4 C 0.025 3.975 5 H 0.141 0.859 6 O -0.295 6.295 7 C -0.073 4.073 8 C 0.264 3.736 9 O -0.436 6.436 10 N -0.301 5.301 11 C 0.066 3.934 12 C -0.263 4.263 13 C -0.120 4.120 14 C -0.214 4.214 15 C 0.092 3.908 16 C -0.526 4.526 17 H 0.101 0.899 18 C -0.181 4.181 19 N -0.454 5.454 20 Si 0.806 3.194 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.178 1.178 24 C -0.273 4.273 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.259 0.741 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.189 -16.780 2.036 17.201 hybrid contribution 0.052 0.951 0.440 1.049 sum -3.137 -15.828 2.476 16.325 Atomic orbital electron populations 1.21786 0.95055 1.02346 1.01916 1.21420 0.96271 0.94118 1.03127 1.21762 0.89509 1.00193 1.03541 1.22241 0.95904 0.87059 0.92257 0.85870 1.87967 1.38424 1.69192 1.33905 1.23048 0.84771 0.95877 1.03592 1.22440 0.80020 0.90154 0.80944 1.90691 1.38135 1.75365 1.39384 1.43428 1.56202 1.08190 1.22254 1.17506 0.93143 0.83235 0.99494 1.20568 0.98007 0.95893 1.11797 1.20817 0.98866 0.93140 0.99150 1.21303 0.95609 0.98416 1.06067 1.17761 0.91449 0.92037 0.89570 1.19830 1.19589 0.93003 1.20150 0.89871 1.26821 0.94030 1.02191 0.95045 1.69904 1.35028 1.21929 1.18554 0.85149 0.79327 0.76418 0.78470 1.18702 1.19586 1.17763 1.20894 1.00168 0.92826 1.13426 0.92055 0.93547 0.91512 0.91871 0.90028 0.88467 0.92707 0.95601 0.88029 0.90842 0.74125 0.87887 0.87595 0.87933 0.90166 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.11 -1.68 5.75 30.60 0.18 -1.51 16 3 C -0.11 -2.27 4.90 30.60 0.15 -2.12 16 4 C 0.09 2.06 2.54 29.85 0.08 2.13 16 5 H 0.12 1.96 7.71 -2.38 -0.02 1.94 16 6 O -0.38 -10.08 9.41 -129.99 -1.22 -11.30 16 7 C 0.02 0.46 10.87 113.37 1.23 1.70 16 8 C 0.48 16.58 6.98 87.66 0.61 17.19 16 9 O -0.56 -25.42 13.93 15.94 0.22 -25.20 16 10 N -0.65 -22.38 5.26 -303.65 -1.60 -23.97 16 11 C 0.16 7.27 6.29 38.11 0.24 7.51 16 12 C -0.24 -11.97 8.70 22.58 0.20 -11.78 16 13 C -0.10 -5.16 10.02 22.20 0.22 -4.94 16 14 C -0.19 -10.69 8.69 22.75 0.20 -10.49 16 15 C 0.09 5.18 5.56 -21.31 -0.12 5.06 16 16 C -0.50 -26.53 9.05 23.46 0.21 -26.32 16 17 H 0.08 4.18 7.90 -2.91 -0.02 4.16 16 18 C 0.03 1.71 5.14 85.25 0.44 2.15 16 19 N -0.83 -44.27 10.98 21.82 0.24 -44.03 16 20 Si 0.99 37.94 29.59 68.60 2.03 39.97 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 22 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 23 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 24 C -0.25 -12.20 9.70 22.85 0.22 -11.98 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 1.06 7.90 -2.39 -0.02 1.05 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 1.66 7.99 -2.38 -0.02 1.64 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 34 H 0.07 0.99 7.98 -2.38 -0.02 0.97 16 35 H 0.42 10.49 8.71 -92.70 -0.81 9.69 16 36 H 0.10 5.11 6.21 -2.91 -0.02 5.10 16 37 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 38 H 0.10 5.85 6.20 -2.91 -0.02 5.83 16 39 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 40 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -70.74 336.62 4.47 -66.27 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.23 Total: 33.05 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 4.57 Total: -34.79 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -1.36 Total: -68.00 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -1.00 Total: -36.50 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -70.74 4.47 -66.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456729847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.219 kcal (2) G-P(sol) polarization free energy of solvation -70.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds