Wall clock time and date at job start Mon Mar 30 2020 01:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47380 * 2 1 4 4 C 1.52996 * 109.47380 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47210 * 55.00194 * 4 3 2 6 6 O 1.42907 * 109.47306 * 295.00224 * 4 3 2 7 7 C 1.42898 * 113.99915 * 149.99611 * 6 4 3 8 8 C 1.50709 * 109.47383 * 175.00203 * 4 3 2 9 9 O 1.21281 * 119.99656 * 115.00270 * 8 4 3 10 10 N 1.34776 * 119.99468 * 295.27313 * 8 4 3 11 11 C 1.39938 * 119.99533 * 174.61396 * 10 8 4 12 12 C 1.39291 * 119.94888 * 325.55176 * 11 10 8 13 13 C 1.38486 * 120.43017 * 179.76520 * 12 11 10 14 14 C 1.37685 * 120.31987 * 0.51113 * 13 12 11 15 15 C 1.40739 * 119.88422 * 359.74892 * 14 13 12 16 16 C 1.41406 * 120.20741 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00674 * 25.12643 * 16 15 14 18 18 C 1.39932 * 119.99813 * 205.13154 * 16 15 14 19 19 N 1.30828 * 120.00407 * 16.78457 * 18 16 15 20 20 Si 1.86802 * 119.99954 * 196.79044 * 18 16 15 21 21 H 1.48499 * 109.47273 * 89.99847 * 20 18 16 22 22 H 1.48506 * 109.47072 * 209.99724 * 20 18 16 23 23 H 1.48503 * 109.46993 * 329.99555 * 20 18 16 24 24 C 1.38241 * 119.95009 * 145.82850 * 11 10 8 25 25 H 1.09003 * 109.47352 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46854 * 300.00069 * 1 2 3 27 27 H 1.08997 * 109.47326 * 59.99746 * 1 2 3 28 28 H 1.09003 * 109.46854 * 239.99931 * 2 1 3 29 29 H 1.08997 * 109.47326 * 120.00254 * 2 1 3 30 30 H 1.09003 * 109.47183 * 60.00133 * 3 2 1 31 31 H 1.09004 * 109.47392 * 300.00137 * 3 2 1 32 32 H 1.09000 * 109.46746 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47360 * 300.00524 * 7 6 4 34 34 H 1.09002 * 109.47015 * 60.00324 * 7 6 4 35 35 H 0.97000 * 120.00338 * 354.62122 * 10 8 4 36 36 H 1.08001 * 119.78458 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.83935 * 180.26438 * 13 12 11 38 38 H 1.08003 * 120.05417 * 179.76811 * 14 13 12 39 39 H 0.96997 * 120.00726 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.15643 * 359.96155 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9336 0.8529 -0.8409 6 8 4.0458 0.8731 1.2220 7 6 5.3055 0.2092 1.1018 8 6 4.0724 2.8579 -0.1231 9 8 4.6927 3.3630 0.7884 10 7 3.8277 3.5641 -1.2447 11 6 4.1946 4.9126 -1.3163 12 6 4.1253 5.7135 -0.1788 13 6 4.4906 7.0480 -0.2373 14 6 4.9167 7.6006 -1.4242 15 6 4.9867 6.8050 -2.5830 16 6 5.4239 7.3654 -3.8055 17 1 6.0691 8.2315 -3.8025 18 6 5.0205 6.7977 -5.0192 19 7 4.0018 5.9774 -5.0513 20 14 5.9366 7.2111 -6.5938 21 1 7.0425 6.2401 -6.7926 22 1 5.0009 7.1380 -7.7447 23 1 6.4947 8.5838 -6.4960 24 6 4.6199 5.4492 -2.5173 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.5972 -0.1947 2.0712 33 1 5.2207 -0.6030 0.3799 34 1 6.0596 0.9194 0.7627 35 1 3.3971 3.1376 -2.0021 36 1 3.7885 5.2899 0.7558 37 1 4.4372 7.6592 0.6515 38 1 5.1970 8.6428 -1.4658 39 1 3.7224 5.5837 -5.8925 40 1 4.6703 4.8300 -3.4007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456729848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:31 Heat of formation + Delta-G solvation = -77.609816 kcal Electronic energy + Delta-G solvation = -21322.353898 eV Core-core repulsion = 18101.370142 eV Total energy + Delta-G solvation = -3220.983756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03141 -37.99462 -36.75380 -34.95238 -34.16042 -33.26794 -30.33109 -29.51976 -28.15361 -26.37484 -25.27879 -24.55816 -21.45822 -21.27546 -20.93335 -19.55113 -17.50862 -17.29364 -16.81459 -15.68412 -15.55443 -14.88382 -14.78640 -14.70304 -14.48087 -14.11443 -13.46568 -13.37426 -13.01398 -12.77980 -12.46554 -12.34546 -12.11605 -11.65088 -11.49833 -11.32548 -11.21659 -11.15484 -11.06047 -10.73771 -10.71153 -10.65319 -10.33776 -9.93235 -9.73651 -9.35678 -9.12436 -8.75508 -7.38813 -7.02257 -6.70374 -4.38301 2.53666 2.83796 3.05855 3.09574 3.18362 3.33527 3.43577 3.87835 3.92215 4.62320 4.68131 4.78960 4.93395 5.01933 5.15716 5.29221 5.38338 5.50715 5.53364 5.66622 5.68376 5.71008 5.76853 5.97933 6.08532 6.20763 6.27527 6.63903 6.68978 6.85679 6.99650 7.04760 7.08865 7.24993 7.61413 7.68901 7.92917 8.02249 8.15749 8.31928 8.55473 8.75198 8.87980 8.95265 10.17899 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019272 B = 0.004295 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.560071 B = 6517.198560 C = 7045.494424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.113 4.113 4 C 0.076 3.924 5 H 0.083 0.917 6 O -0.357 6.357 7 C 0.029 3.971 8 C 0.481 3.519 9 O -0.511 6.511 10 N -0.663 5.663 11 C 0.145 3.855 12 C -0.226 4.226 13 C -0.086 4.086 14 C -0.228 4.228 15 C 0.120 3.880 16 C -0.464 4.464 17 H 0.078 0.922 18 C 0.077 3.923 19 N -0.800 5.800 20 Si 0.907 3.093 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.182 4.182 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.046 0.954 35 H 0.401 0.599 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.279 0.721 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.868 -12.442 3.554 13.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.151 4.151 4 C 0.014 3.986 5 H 0.101 0.899 6 O -0.274 6.274 7 C -0.067 4.067 8 C 0.266 3.734 9 O -0.385 6.385 10 N -0.309 5.309 11 C 0.053 3.947 12 C -0.247 4.247 13 C -0.105 4.105 14 C -0.248 4.248 15 C 0.117 3.883 16 C -0.494 4.494 17 H 0.096 0.904 18 C -0.140 4.140 19 N -0.426 5.426 20 Si 0.732 3.268 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.203 4.203 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.235 0.765 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.686 -12.245 4.263 13.480 hybrid contribution 0.359 -0.047 -1.441 1.485 sum -3.326 -12.293 2.822 13.044 Atomic orbital electron populations 1.21770 0.95630 1.01542 1.02063 1.21479 0.95933 0.95926 1.02440 1.21693 0.90946 0.98464 1.03973 1.22099 0.96054 0.91442 0.89013 0.89891 1.87962 1.36577 1.72266 1.30578 1.22840 0.85778 0.95672 1.02424 1.21321 0.80501 0.88616 0.82947 1.90709 1.38483 1.70695 1.38656 1.43547 1.59995 1.10727 1.16596 1.17615 1.00387 0.81129 0.95552 1.20304 1.13388 0.93992 0.97028 1.20424 0.99394 0.94197 0.96467 1.21045 1.11403 0.98357 0.93953 1.17360 0.88369 0.90333 0.92214 1.19549 1.27253 1.12705 0.89883 0.90352 1.25865 0.93500 0.93546 1.01052 1.69811 1.19810 1.24487 1.28527 0.86325 0.80048 0.80133 0.80275 1.19375 1.20369 1.18621 1.21070 1.07601 0.96320 0.95348 0.92779 0.92605 0.92599 0.92089 0.91147 0.90293 0.89855 0.89425 0.94144 0.93543 0.76454 0.88151 0.89026 0.88848 0.91064 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.13 5.83 -26.74 -0.16 -1.29 16 3 C -0.11 -1.31 4.89 -26.74 -0.13 -1.44 16 4 C 0.08 1.03 2.52 -27.88 -0.07 0.96 16 5 H 0.08 0.93 7.79 -51.93 -0.40 0.53 16 6 O -0.36 -5.20 9.42 -55.09 -0.52 -5.72 16 7 C 0.03 0.34 10.81 101.05 1.09 1.44 16 8 C 0.48 8.87 6.87 -10.98 -0.08 8.80 16 9 O -0.51 -11.59 14.25 -14.30 -0.20 -11.80 16 10 N -0.66 -12.58 5.21 -9.91 -0.05 -12.63 16 11 C 0.14 3.42 6.25 -83.76 -0.52 2.90 16 12 C -0.23 -5.50 8.66 -39.10 -0.34 -5.84 16 13 C -0.09 -2.05 10.02 -39.69 -0.40 -2.45 16 14 C -0.23 -5.72 9.79 -38.84 -0.38 -6.10 16 15 C 0.12 3.21 5.57 -106.85 -0.59 2.62 16 16 C -0.46 -12.23 9.05 -37.74 -0.34 -12.58 16 17 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 18 C 0.08 1.90 5.16 -17.35 -0.09 1.81 16 19 N -0.80 -19.98 10.94 55.55 0.61 -19.37 16 20 Si 0.91 18.41 29.59 -169.99 -5.03 13.38 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 24 C -0.18 -4.64 8.60 -38.69 -0.33 -4.98 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 0.90 7.91 -51.93 -0.41 0.49 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.40 6.34 8.69 -40.82 -0.35 5.98 16 36 H 0.10 2.44 6.47 -52.49 -0.34 2.10 16 37 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 38 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 39 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 40 H 0.12 3.13 6.17 -52.48 -0.32 2.81 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -30.65 336.89 -8.10 -38.75 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.01 Total: 9.36 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -1.97 Total: -17.06 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.56 Total: -32.00 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.72 Total: -17.51 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.65 -8.10 -38.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456729848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.858 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds