Wall clock time and date at job start Mon Mar 30 2020 01:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47380 * 2 1 4 4 C 1.52996 * 109.47380 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47210 * 55.00194 * 4 3 2 6 6 O 1.42907 * 109.47306 * 295.00224 * 4 3 2 7 7 C 1.42898 * 113.99915 * 149.99611 * 6 4 3 8 8 C 1.50709 * 109.47383 * 175.00203 * 4 3 2 9 9 O 1.21281 * 119.99656 * 115.00270 * 8 4 3 10 10 N 1.34776 * 119.99468 * 295.27313 * 8 4 3 11 11 C 1.39938 * 119.99533 * 174.61396 * 10 8 4 12 12 C 1.39291 * 119.94888 * 325.55176 * 11 10 8 13 13 C 1.38486 * 120.43017 * 179.76520 * 12 11 10 14 14 C 1.37685 * 120.31987 * 0.51113 * 13 12 11 15 15 C 1.40739 * 119.88422 * 359.74892 * 14 13 12 16 16 C 1.41406 * 120.20741 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00674 * 25.12643 * 16 15 14 18 18 C 1.39932 * 119.99813 * 205.13154 * 16 15 14 19 19 N 1.30828 * 120.00407 * 16.78457 * 18 16 15 20 20 Si 1.86802 * 119.99954 * 196.79044 * 18 16 15 21 21 H 1.48499 * 109.47273 * 89.99847 * 20 18 16 22 22 H 1.48506 * 109.47072 * 209.99724 * 20 18 16 23 23 H 1.48503 * 109.46993 * 329.99555 * 20 18 16 24 24 C 1.38241 * 119.95009 * 145.82850 * 11 10 8 25 25 H 1.09003 * 109.47352 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46854 * 300.00069 * 1 2 3 27 27 H 1.08997 * 109.47326 * 59.99746 * 1 2 3 28 28 H 1.09003 * 109.46854 * 239.99931 * 2 1 3 29 29 H 1.08997 * 109.47326 * 120.00254 * 2 1 3 30 30 H 1.09003 * 109.47183 * 60.00133 * 3 2 1 31 31 H 1.09004 * 109.47392 * 300.00137 * 3 2 1 32 32 H 1.09000 * 109.46746 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47360 * 300.00524 * 7 6 4 34 34 H 1.09002 * 109.47015 * 60.00324 * 7 6 4 35 35 H 0.97000 * 120.00338 * 354.62122 * 10 8 4 36 36 H 1.08001 * 119.78458 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.83935 * 180.26438 * 13 12 11 38 38 H 1.08003 * 120.05417 * 179.76811 * 14 13 12 39 39 H 0.96997 * 120.00726 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.15643 * 359.96155 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9336 0.8529 -0.8409 6 8 4.0458 0.8731 1.2220 7 6 5.3055 0.2092 1.1018 8 6 4.0724 2.8579 -0.1231 9 8 4.6927 3.3630 0.7884 10 7 3.8277 3.5641 -1.2447 11 6 4.1946 4.9126 -1.3163 12 6 4.1253 5.7135 -0.1788 13 6 4.4906 7.0480 -0.2373 14 6 4.9167 7.6006 -1.4242 15 6 4.9867 6.8050 -2.5830 16 6 5.4239 7.3654 -3.8055 17 1 6.0691 8.2315 -3.8025 18 6 5.0205 6.7977 -5.0192 19 7 4.0018 5.9774 -5.0513 20 14 5.9366 7.2111 -6.5938 21 1 7.0425 6.2401 -6.7926 22 1 5.0009 7.1380 -7.7447 23 1 6.4947 8.5838 -6.4960 24 6 4.6199 5.4492 -2.5173 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.5972 -0.1947 2.0712 33 1 5.2207 -0.6030 0.3799 34 1 6.0596 0.9194 0.7627 35 1 3.3971 3.1376 -2.0021 36 1 3.7885 5.2899 0.7558 37 1 4.4372 7.6592 0.6515 38 1 5.1970 8.6428 -1.4658 39 1 3.7224 5.5837 -5.8925 40 1 4.6703 4.8300 -3.4007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456729848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:30 Heat of formation + Delta-G solvation = -95.013519 kcal Electronic energy + Delta-G solvation = -21323.108579 eV Core-core repulsion = 18101.370142 eV Total energy + Delta-G solvation = -3221.738437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50989 -39.49958 -38.29785 -36.12506 -35.66009 -35.02023 -31.64052 -31.31707 -29.73170 -27.31772 -27.19388 -25.69454 -23.18044 -22.70912 -22.10215 -21.19109 -19.28943 -18.72699 -18.05956 -17.31126 -16.89486 -16.50132 -16.34939 -15.90920 -15.67359 -15.58353 -14.83689 -14.72744 -14.35076 -14.21509 -14.14293 -13.51833 -13.29973 -13.13516 -12.98504 -12.84210 -12.60414 -12.42337 -12.31666 -12.04476 -11.99013 -11.82721 -11.60179 -11.49800 -11.46451 -11.15159 -10.89141 -10.24767 -9.35146 -8.87782 -8.55957 -6.36587 0.77750 1.02395 1.40858 1.49419 1.52981 1.70584 2.08181 2.22660 2.74127 2.77085 3.56546 3.69511 3.83319 3.88752 4.20668 4.27152 4.43396 4.45469 4.50754 4.68106 4.69581 4.73237 4.81020 4.83133 4.91537 5.02729 5.09623 5.13821 5.19694 5.25353 5.34728 5.35104 5.49302 5.75905 5.82057 5.97577 6.02868 6.07209 6.32909 6.56266 6.71633 6.92884 6.96437 7.23942 8.34090 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019272 B = 0.004295 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.560071 B = 6517.198560 C = 7045.494424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.110 4.110 4 C 0.086 3.914 5 H 0.117 0.883 6 O -0.375 6.375 7 C 0.023 3.977 8 C 0.478 3.522 9 O -0.557 6.557 10 N -0.656 5.656 11 C 0.150 3.850 12 C -0.243 4.243 13 C -0.085 4.085 14 C -0.249 4.249 15 C 0.093 3.907 16 C -0.499 4.499 17 H 0.075 0.925 18 C 0.040 3.960 19 N -0.820 5.820 20 Si 0.981 3.019 21 H -0.263 1.263 22 H -0.266 1.266 23 H -0.262 1.262 24 C -0.201 4.201 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.417 0.583 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.290 0.710 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.222 -14.108 2.343 14.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.148 4.148 4 C 0.024 3.976 5 H 0.134 0.866 6 O -0.292 6.292 7 C -0.072 4.072 8 C 0.266 3.734 9 O -0.435 6.435 10 N -0.303 5.303 11 C 0.057 3.943 12 C -0.264 4.264 13 C -0.103 4.103 14 C -0.269 4.269 15 C 0.090 3.910 16 C -0.528 4.528 17 H 0.094 0.906 18 C -0.175 4.175 19 N -0.446 5.446 20 Si 0.802 3.198 21 H -0.188 1.188 22 H -0.190 1.190 23 H -0.186 1.186 24 C -0.223 4.223 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.254 0.746 36 H 0.116 0.884 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.068 -13.946 3.054 14.845 hybrid contribution 0.448 0.439 -1.004 1.184 sum -3.620 -13.507 2.050 14.133 Atomic orbital electron populations 1.21772 0.94964 1.02376 1.01900 1.21439 0.96435 0.94107 1.03109 1.21731 0.89306 1.00196 1.03560 1.22200 0.97132 0.88170 0.90073 0.86563 1.87955 1.37627 1.72310 1.31307 1.23034 0.84132 0.95761 1.04321 1.22371 0.79109 0.90311 0.81581 1.90681 1.40531 1.72169 1.40081 1.43522 1.59834 1.09189 1.17739 1.17681 0.98804 0.83121 0.94663 1.20449 1.14236 0.94492 0.97183 1.20719 0.98142 0.94420 0.97048 1.21214 1.12558 0.98868 0.94221 1.17767 0.88876 0.91247 0.93087 1.19801 1.28406 1.13623 0.90988 0.90640 1.26677 0.93874 0.93093 1.03880 1.69835 1.20228 1.24451 1.30106 0.85215 0.78760 0.79797 0.76002 1.18787 1.18991 1.18557 1.21029 1.09306 0.96146 0.95808 0.91454 0.93241 0.92359 0.90331 0.91520 0.92070 0.89006 0.87876 0.91033 0.95718 0.74578 0.88404 0.86441 0.88053 0.89950 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.11 -1.83 5.83 30.59 0.18 -1.65 16 3 C -0.11 -2.36 4.89 30.59 0.15 -2.21 16 4 C 0.09 2.20 2.52 29.85 0.08 2.27 16 5 H 0.12 2.23 7.79 -2.39 -0.02 2.21 16 6 O -0.37 -10.37 9.42 -129.99 -1.22 -11.60 16 7 C 0.02 0.51 10.81 113.37 1.23 1.73 16 8 C 0.48 17.49 6.87 87.66 0.60 18.09 16 9 O -0.56 -25.65 14.25 15.96 0.23 -25.42 16 10 N -0.66 -24.72 5.21 -303.65 -1.58 -26.30 16 11 C 0.15 7.21 6.25 38.10 0.24 7.45 16 12 C -0.24 -11.98 8.66 22.58 0.20 -11.78 16 13 C -0.08 -4.08 10.02 22.20 0.22 -3.86 16 14 C -0.25 -12.77 9.79 22.75 0.22 -12.55 16 15 C 0.09 5.10 5.57 -21.31 -0.12 4.98 16 16 C -0.50 -26.78 9.05 23.46 0.21 -26.57 16 17 H 0.08 3.94 7.90 -2.91 -0.02 3.92 16 18 C 0.04 1.96 5.16 85.25 0.44 2.40 16 19 N -0.82 -40.74 10.94 21.82 0.24 -40.51 16 20 Si 0.98 37.13 29.59 68.60 2.03 39.16 16 21 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 23 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 24 C -0.20 -10.48 8.60 22.85 0.20 -10.28 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.15 7.82 -2.39 -0.02 1.13 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.80 7.91 -2.38 -0.02 1.78 16 32 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 34 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.42 12.78 8.69 -92.71 -0.81 11.97 16 36 H 0.10 4.84 6.47 -2.91 -0.02 4.83 16 37 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 38 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 39 H 0.29 12.83 8.30 -92.71 -0.77 12.06 16 40 H 0.12 6.07 6.17 -2.91 -0.02 6.05 16 Total: -1.00 -67.34 336.89 4.47 -62.87 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: 0.23 Total: 35.31 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 4.55 Total: -33.51 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -1.34 Total: -66.81 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -1.00 Total: -37.02 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Total: -67.34 4.47 -62.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456729848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.147 kcal (2) G-P(sol) polarization free energy of solvation -67.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds